Wall clock time and date at job start Sat Apr 11 2020 06:36:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47204 * 179.97438 * 2 1
4 4 O 1.42903 * 113.00973 * 345.59865 * 3 2 1
5 5 C 1.53928 * 113.73150 * 117.23453 * 3 2 1
6 6 N 1.47963 * 86.17871 * 138.07934 * 5 3 2
7 7 C 1.46906 * 110.99648 * 222.41748 * 6 5 3
8 8 H 1.08997 * 109.47168 * 55.00002 * 7 6 5
9 9 C 1.53003 * 109.47160 * 294.99474 * 7 6 5
10 10 C 1.50706 * 109.46627 * 175.00224 * 7 6 5
11 11 O 1.21281 * 120.00266 * 9.86337 * 10 7 6
12 12 N 1.34777 * 119.99610 * 189.86928 * 10 7 6
13 13 C 1.46499 * 119.99976 * 4.11119 * 12 10 7
14 14 C 1.50700 * 109.47127 * 82.19082 * 13 12 10
15 15 H 1.07997 * 119.99769 * 359.97438 * 14 13 12
16 16 C 1.37875 * 119.99719 * 179.97438 * 14 13 12
17 17 N 1.31506 * 120.00511 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 119.99887 * 179.97438 * 16 14 13
19 19 H 1.48502 * 109.47033 * 90.00004 * 18 16 14
20 20 H 1.48493 * 109.47354 * 210.00327 * 18 16 14
21 21 H 1.48506 * 109.46850 * 330.00423 * 18 16 14
22 22 C 1.39929 * 119.99749 * 184.11263 * 12 10 7
23 23 C 1.38869 * 120.07185 * 2.30393 * 22 12 10
24 24 C 1.38108 * 119.92800 * 179.71994 * 23 22 12
25 25 C 1.38285 * 120.07399 * 0.57141 * 24 23 22
26 26 C 1.50695 * 119.93294 * 179.70008 * 25 24 23
27 27 C 1.38282 * 120.13283 * 359.68360 * 25 24 23
28 28 C 1.38105 * 120.07557 * 0.03797 * 27 25 24
29 29 C 1.47964 * 90.76186 * 335.30839 * 6 5 3
30 30 H 4.45331 * 5.13544 * 179.97438 * 4 1 2
31 31 H 0.96704 * 113.99871 * 311.63730 * 4 3 2
32 32 H 1.08998 * 113.76305 * 252.39676 * 5 3 2
33 33 H 1.09006 * 113.76128 * 23.76159 * 5 3 2
34 34 H 1.09003 * 109.46484 * 66.49193 * 9 7 6
35 35 H 1.09001 * 109.46977 * 186.48806 * 9 7 6
36 36 H 1.08996 * 109.47419 * 306.49315 * 9 7 6
37 37 H 1.09003 * 109.46901 * 202.18669 * 13 12 10
38 38 H 1.08997 * 109.47361 * 322.18334 * 13 12 10
39 39 H 0.97000 * 120.00894 * 179.97438 * 17 16 14
40 40 H 1.07999 * 120.03179 * 359.97235 * 23 22 12
41 41 H 1.08002 * 119.96248 * 180.25360 * 24 23 22
42 42 H 1.09004 * 109.46789 * 269.98037 * 26 25 24
43 43 H 1.09001 * 109.46929 * 29.97878 * 26 25 24
44 44 H 1.08994 * 109.47462 * 149.98046 * 26 25 24
45 45 H 1.08008 * 119.96105 * 180.02562 * 27 25 24
46 46 H 1.08000 * 120.03667 * 179.97438 * 28 27 25
47 47 H 1.08999 * 113.75982 * 270.37301 * 29 6 5
48 48 H 1.08996 * 113.75623 * 139.00548 * 29 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 8 3.2052 -1.2731 0.3271
5 6 3.2653 0.6458 -1.2529
6 7 4.2309 1.2796 -0.3282
7 6 4.4606 2.6850 -0.6891
8 1 3.5068 3.2112 -0.7259
9 6 5.1356 2.7556 -2.0604
10 6 5.3505 3.3294 0.3425
11 8 5.8979 2.6471 1.1825
12 7 5.5378 4.6640 0.3315
13 6 4.8069 5.4985 -0.6254
14 6 3.4259 5.7815 -0.0927
15 1 3.1229 5.3797 0.8628
16 6 2.5493 6.5535 -0.8253
17 7 2.9181 7.0424 -1.9890
18 14 0.8372 6.9038 -0.1654
19 1 0.8644 8.1470 0.6464
20 1 -0.1054 7.0740 -1.3001
21 1 0.3917 5.7688 0.6823
22 6 6.4305 5.2526 1.2341
23 6 7.1598 4.4586 2.1094
24 6 8.0444 5.0422 2.9950
25 6 8.1956 6.4166 3.0189
26 6 9.1567 7.0505 3.9913
27 6 7.4669 7.2103 2.1522
28 6 6.5850 6.6325 1.2603
29 6 3.2650 1.1697 0.7873
30 1 -1.0498 -0.0003 0.0003
31 1 2.8189 -1.6819 1.1138
32 1 3.7185 -0.0710 -1.9376
33 1 2.6058 1.3551 -1.7532
34 1 4.4460 2.3949 -2.8236
35 1 5.4101 3.7879 -2.2774
36 1 6.0311 2.1344 -2.0570
37 1 5.3403 6.4381 -0.7697
38 1 4.7287 4.9751 -1.5783
39 1 2.3014 7.5853 -2.5046
40 1 7.0384 3.3856 2.0947
41 1 8.6148 4.4249 3.6732
42 1 8.6364 7.2742 4.9226
43 1 9.9786 6.3628 4.1903
44 1 9.5500 7.9729 3.5642
45 1 7.5875 8.2834 2.1730
46 1 6.0159 7.2530 0.5839
47 1 2.6055 2.0322 0.8838
48 1 3.7181 0.8714 1.7327
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000934447601.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:53
Heat of formation + Delta-G solvation = 45.131477 kcal
Electronic energy + Delta-G solvation = -30505.693860 eV
Core-core repulsion = 26528.852996 eV
Total energy + Delta-G solvation = -3976.840864 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.24817 -41.15850 -39.40725 -37.10311 -36.97375 -34.78357 -34.20651 -33.42431
-32.15500 -31.79221 -29.43147 -28.17985 -27.60955 -26.97562 -25.54211 -24.51764
-23.29740 -22.52487 -21.48701 -20.71224 -19.81274 -18.81962 -18.47923 -17.88994
-17.46176 -16.99318 -16.77860 -16.50838 -16.24718 -16.10107 -15.85500 -15.37325
-14.95417 -14.75480 -14.49948 -14.41748 -14.32298 -14.17991 -14.00732 -13.65870
-13.46647 -13.20682 -13.12343 -12.99807 -12.96843 -12.91252 -12.68022 -12.46482
-12.38586 -12.27844 -12.16549 -11.91350 -11.79932 -11.75776 -11.60901 -10.89172
-10.74621 -10.66317 -10.19743 -9.84280 -9.79362 -8.66757 -8.25233 -6.42910
0.38342 0.56111 1.34501 1.37607 1.45402 1.58792 1.63860 1.66459
1.96101 2.33785 2.63991 2.95475 2.98545 3.01528 3.26366 3.44071
3.55798 3.85468 3.95349 4.04494 4.11111 4.17836 4.25289 4.28694
4.47185 4.48411 4.55661 4.60461 4.61999 4.62781 4.73577 4.82238
4.87682 4.89413 4.92482 4.95967 5.00397 5.12057 5.19471 5.26980
5.30851 5.43840 5.55254 5.61129 5.73379 5.78835 5.83900 5.93104
6.33031 6.40754 6.49811 6.64133 6.69259 7.16690 7.28659 8.77028
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.008390 B = 0.004454 C = 0.003299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3336.460671 B = 6284.903630 C = 8485.925885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.261 4.261
3 C 0.227 3.773
4 O -0.528 6.528
5 C 0.027 3.973
6 N -0.454 5.454
7 C 0.040 3.960
8 H 0.078 0.922
9 C -0.138 4.138
10 C 0.521 3.479
11 O -0.540 6.540
12 N -0.540 5.540
13 C 0.231 3.769
14 C -0.547 4.547
15 H 0.043 0.957
16 C 0.034 3.966
17 N -0.910 5.910
18 Si 0.948 3.052
19 H -0.277 1.277
20 H -0.273 1.273
21 H -0.273 1.273
22 C 0.135 3.865
23 C -0.193 4.193
24 C -0.105 4.105
25 C -0.124 4.124
26 C -0.101 4.101
27 C -0.102 4.102
28 C -0.165 4.165
29 C -0.009 4.009
30 H 0.256 0.744
31 H 0.397 0.603
32 H 0.116 0.884
33 H 0.092 0.908
34 H 0.087 0.913
35 H 0.067 0.933
36 H 0.069 0.931
37 H 0.033 0.967
38 H 0.057 0.943
39 H 0.271 0.729
40 H 0.165 0.835
41 H 0.141 0.859
42 H 0.075 0.925
43 H 0.075 0.925
44 H 0.075 0.925
45 H 0.143 0.857
46 H 0.117 0.883
47 H 0.067 0.933
48 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.113 -7.780 4.154 8.889
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.262 4.262
3 C 0.185 3.815
4 O -0.335 6.335
5 C -0.101 4.101
6 N -0.177 5.177
7 C -0.072 4.072
8 H 0.096 0.904
9 C -0.195 4.195
10 C 0.312 3.688
11 O -0.420 6.420
12 N -0.260 5.260
13 C 0.111 3.889
14 C -0.585 4.585
15 H 0.061 0.939
16 C -0.168 4.168
17 N -0.548 5.548
18 Si 0.774 3.226
19 H -0.202 1.202
20 H -0.198 1.198
21 H -0.198 1.198
22 C 0.040 3.960
23 C -0.213 4.213
24 C -0.124 4.124
25 C -0.125 4.125
26 C -0.158 4.158
27 C -0.120 4.120
28 C -0.185 4.185
29 C -0.138 4.138
30 H 0.273 0.727
31 H 0.248 0.752
32 H 0.134 0.866
33 H 0.110 0.890
34 H 0.106 0.894
35 H 0.086 0.914
36 H 0.088 0.912
37 H 0.051 0.949
38 H 0.074 0.926
39 H 0.080 0.920
40 H 0.181 0.819
41 H 0.159 0.841
42 H 0.093 0.907
43 H 0.094 0.906
44 H 0.094 0.906
45 H 0.161 0.839
46 H 0.135 0.865
47 H 0.085 0.915
48 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 2.328 -8.178 3.883 9.348
hybrid contribution -2.364 1.035 0.472 2.623
sum -0.036 -7.144 4.355 8.367
Atomic orbital electron populations
1.25918 0.96645 0.96136 0.96996 1.23594 0.94864 1.04061 1.03690
1.18932 0.81677 0.84530 0.96389 1.86569 1.64212 1.31307 1.51433
1.24203 0.93188 0.97595 0.95073 1.68563 1.33044 1.11759 1.04360
1.22121 0.98991 0.90814 0.95255 0.90430 1.21846 1.01642 1.02995
0.93063 1.20808 0.81527 0.81177 0.85328 1.90230 1.49531 1.63402
1.38855 1.45938 1.39059 1.07194 1.33803 1.19667 0.90426 0.90708
0.88056 1.21415 0.98622 1.33485 1.05004 0.93890 1.25485 1.01734
0.94781 0.94817 1.69967 1.37598 1.34325 1.12901 0.85696 0.79972
0.78649 0.78305 1.20239 1.19825 1.19789 1.18394 0.92120 0.93053
0.92468 1.22711 0.98070 1.03583 0.96931 1.21247 0.97934 0.94835
0.98352 1.20246 0.99778 0.93526 0.98980 1.20731 0.97007 1.00931
0.97090 1.21061 0.95575 1.00490 0.94887 1.21072 1.02133 0.92780
1.02518 1.24595 0.93682 0.97780 0.97755 0.72748 0.75192 0.86588
0.88952 0.89419 0.91421 0.91229 0.94909 0.92579 0.91964 0.81856
0.84089 0.90684 0.90588 0.90610 0.83886 0.86487 0.91510 0.88873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.82 19.25 74.32 1.43 -1.39 16
2 C -0.26 -6.57 12.69 31.13 0.39 -6.17 16
3 C 0.23 6.23 1.80 -11.96 -0.02 6.21 16
4 O -0.53 -13.45 13.49 -148.98 -2.01 -15.46 16
5 C 0.03 0.78 6.32 86.40 0.55 1.32 16
6 N -0.45 -15.57 5.56 -890.30 -4.95 -20.52 16
7 C 0.04 1.51 1.27 44.17 0.06 1.57 16
8 H 0.08 3.22 6.50 -2.39 -0.02 3.20 16
9 C -0.14 -4.58 8.70 71.98 0.63 -3.96 16
10 C 0.52 22.68 6.58 87.66 0.58 23.26 16
11 O -0.54 -24.71 12.55 -3.03 -0.04 -24.75 16
12 N -0.54 -24.44 2.71 -635.31 -1.72 -26.16 16
13 C 0.23 11.05 4.34 85.63 0.37 11.42 16
14 C -0.55 -28.21 8.44 25.60 0.22 -28.00 16
15 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16
16 C 0.03 1.72 5.46 84.66 0.46 2.18 16
17 N -0.91 -48.00 13.28 21.45 0.28 -47.72 16
18 Si 0.95 40.87 29.54 68.60 2.03 42.90 16
19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16
20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16
22 C 0.13 5.89 6.51 38.15 0.25 6.13 16
23 C -0.19 -7.84 9.04 22.39 0.20 -7.63 16
24 C -0.11 -3.47 9.69 22.25 0.22 -3.25 16
25 C -0.12 -3.71 5.88 -19.84 -0.12 -3.83 16
26 C -0.10 -2.06 10.01 71.23 0.71 -1.35 16
27 C -0.10 -3.36 9.69 22.25 0.22 -3.14 16
28 C -0.16 -6.69 9.21 22.39 0.21 -6.48 16
29 C -0.01 -0.29 6.71 86.40 0.58 0.29 16
30 H 0.26 2.81 7.80 -4.43 -0.03 2.78 16
31 H 0.40 6.76 9.02 -74.05 -0.67 6.09 16
32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16
33 H 0.09 2.51 7.79 -2.38 -0.02 2.49 16
34 H 0.09 2.46 7.55 -2.39 -0.02 2.44 16
35 H 0.07 2.44 5.47 -2.39 -0.01 2.42 16
36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
37 H 0.03 1.67 5.90 -2.39 -0.01 1.65 16
38 H 0.06 2.67 4.46 -2.39 -0.01 2.66 16
39 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16
40 H 0.17 7.14 4.52 -62.72 -0.28 6.86 16
41 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16
42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
43 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16
44 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16
45 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16
46 H 0.12 5.10 6.05 -2.91 -0.02 5.08 16
47 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16
48 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16
Total: -1.00 -64.90 393.71 0.57 -64.33
By element:
Atomic # 1 Polarization: 40.13 SS G_CDS: 0.05 Total: 40.18 kcal
Atomic # 6 Polarization: -19.73 SS G_CDS: 6.92 Total: -12.81 kcal
Atomic # 7 Polarization: -88.01 SS G_CDS: -6.38 Total: -94.39 kcal
Atomic # 8 Polarization: -38.16 SS G_CDS: -2.05 Total: -40.21 kcal
Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal
Total: -64.90 0.57 -64.33 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000934447601.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.464 kcal
(2) G-P(sol) polarization free energy of solvation -64.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.131 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds