Wall clock time and date at job start Sat Apr 11 2020 06:37:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86797 * 120.00058 * 2 1
4 4 H 1.48499 * 109.47233 * 272.95904 * 3 2 1
5 5 H 1.48496 * 109.47182 * 32.95584 * 3 2 1
6 6 H 1.48502 * 109.47262 * 152.95560 * 3 2 1
7 7 C 1.38816 * 119.99874 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00326 * 339.36511 * 7 2 1
9 9 N 1.36939 * 119.99638 * 159.37066 * 7 2 1
10 10 C 1.46923 * 120.63924 * 152.63167 * 9 7 2
11 11 C 1.53189 * 108.77534 * 126.30557 * 10 9 7
12 12 C 1.52992 * 109.34857 * 54.57274 * 11 10 9
13 13 C 1.52981 * 109.63728 * 298.78800 * 12 11 10
14 14 C 1.46934 * 120.64270 * 332.60294 * 9 7 2
15 15 C 1.52805 * 109.44203 * 178.98602 * 12 11 10
16 16 N 1.47152 * 108.65263 * 188.07815 * 15 12 11
17 17 C 1.34779 * 120.98803 * 230.41180 * 16 15 12
18 18 O 1.21286 * 119.99662 * 359.72134 * 17 16 15
19 19 C 1.50694 * 120.00024 * 179.44881 * 17 16 15
20 20 F 1.39900 * 110.43694 * 309.18253 * 19 17 16
21 21 C 1.54807 * 110.48808 * 186.49849 * 19 17 16
22 22 C 1.54999 * 102.09553 * 220.44218 * 21 19 17
23 23 O 1.44386 * 103.48770 * 37.01955 * 22 21 19
24 24 C 1.43744 * 106.97489 * 319.94378 * 23 22 21
25 25 C 1.47153 * 118.02442 * 50.14341 * 16 15 12
26 26 C 1.53297 * 108.37561 * 309.67673 * 25 16 15
27 27 O 1.42901 * 109.54328 * 59.04219 * 12 11 10
28 28 H 0.96996 * 119.99836 * 359.97438 * 1 2 3
29 29 H 1.09002 * 109.59181 * 6.51570 * 10 9 7
30 30 H 1.08999 * 109.58663 * 246.09294 * 10 9 7
31 31 H 1.09005 * 109.49157 * 294.61148 * 11 10 9
32 32 H 1.09007 * 109.51736 * 174.55439 * 11 10 9
33 33 H 1.08996 * 109.49537 * 181.17352 * 13 12 11
34 34 H 1.09000 * 109.49238 * 301.25158 * 13 12 11
35 35 H 1.08998 * 109.58273 * 353.48093 * 14 9 7
36 36 H 1.09002 * 109.58381 * 113.90603 * 14 9 7
37 37 H 1.09006 * 109.60547 * 68.24405 * 15 12 11
38 38 H 1.09001 * 109.50812 * 307.85471 * 15 12 11
39 39 H 1.09006 * 110.90851 * 338.64115 * 21 19 17
40 40 H 1.09000 * 110.91095 * 102.24213 * 21 19 17
41 41 H 1.08996 * 110.61789 * 278.52422 * 22 21 19
42 42 H 1.08997 * 110.62393 * 155.51875 * 22 21 19
43 43 H 1.08995 * 109.87819 * 267.08801 * 24 23 22
44 44 H 1.09003 * 109.88120 * 145.93556 * 24 23 22
45 45 H 1.08999 * 109.68639 * 69.40031 * 25 16 15
46 46 H 1.09003 * 109.68242 * 189.91675 * 25 16 15
47 47 H 1.08999 * 109.51263 * 172.27452 * 26 25 16
48 48 H 1.08996 * 109.51142 * 292.42769 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4351 2.0825 -1.3982
5 1 1.4803 2.6338 0.7616
6 1 3.5776 1.4229 0.6366
7 6 2.0102 -1.2022 0.0005
8 1 1.5222 -2.1074 0.3305
9 7 3.3138 -1.2403 -0.4173
10 6 4.2351 -2.2631 0.0963
11 6 4.8736 -2.9920 -1.0902
12 6 5.5257 -1.9689 -2.0222
13 6 4.4611 -1.0103 -2.5587
14 6 3.8180 -0.2596 -1.3883
15 6 6.1852 -2.6957 -3.1934
16 7 6.9687 -1.7221 -3.9704
17 6 6.8286 -1.6277 -5.3075
18 8 6.0514 -2.3551 -5.8887
19 6 7.6332 -0.6141 -6.0797
20 9 7.5079 0.6531 -5.5003
21 6 7.1858 -0.5821 -7.5613
22 6 8.5385 -0.4479 -8.3062
23 8 9.4364 -1.2638 -7.5235
24 6 9.1144 -1.0349 -6.1414
25 6 7.9053 -0.8506 -3.2433
26 6 7.1560 -0.2078 -2.0706
27 8 6.5159 -1.2305 -1.3035
28 1 -0.4850 0.8400 0.0004
29 1 3.6843 -2.9762 0.7098
30 1 5.0124 -1.7875 0.6943
31 1 4.1063 -3.5426 -1.6345
32 1 5.6305 -3.6869 -0.7261
33 1 4.9247 -0.2955 -3.2385
34 1 3.6971 -1.5765 -3.0914
35 1 2.9918 0.3496 -1.7548
36 1 4.5615 0.3785 -0.9107
37 1 5.4175 -3.1389 -3.8278
38 1 6.8435 -3.4767 -2.8130
39 1 6.6811 -1.5086 -7.8354
40 1 6.5472 0.2794 -7.7564
41 1 8.8711 0.5901 -8.3138
42 1 8.4570 -0.8334 -9.3225
43 1 9.7427 -0.2392 -5.7413
44 1 9.2636 -1.9507 -5.5694
45 1 8.7396 -1.4420 -2.8660
46 1 8.2782 -0.0742 -3.9113
47 1 7.8619 0.3324 -1.4397
48 1 6.4055 0.4838 -2.4533
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000949166973.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:50
Heat of formation + Delta-G solvation = -120.194464 kcal
Electronic energy + Delta-G solvation = -32985.110700 eV
Core-core repulsion = 28570.331540 eV
Total energy + Delta-G solvation = -4414.779160 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.179 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-48.60561 -40.95560 -39.77560 -38.58509 -36.58148 -34.88008 -33.23049 -32.22080
-31.32615 -30.53920 -29.95404 -29.10064 -27.22615 -24.52231 -24.18778 -23.38560
-22.86981 -22.57173 -20.95704 -19.71358 -19.23506 -18.01688 -17.47220 -17.19805
-16.98101 -16.21691 -15.91827 -15.66918 -15.62172 -15.20011 -15.11772 -14.82623
-14.69619 -14.49282 -14.32624 -14.00275 -13.66966 -13.60037 -13.31458 -13.10985
-12.66684 -12.34497 -12.29719 -12.17157 -12.05011 -11.94326 -11.91010 -11.72544
-11.51830 -11.35713 -10.98416 -10.80703 -10.59335 -10.40630 -10.24274 -10.19767
-10.00854 -9.77712 -9.67810 -9.39472 -8.75727 -8.54358 -6.94627 -5.93467
-3.28487 1.99925 2.39826 3.22269 3.32273 3.39743 3.48866 3.53259
3.72886 3.78004 3.83230 4.26556 4.49065 4.54552 4.58137 4.62793
4.72062 4.88423 4.91996 4.95862 5.00376 5.05634 5.07770 5.16705
5.18408 5.28826 5.39154 5.46215 5.50832 5.55788 5.63428 5.70500
5.79924 6.00933 6.04602 6.09395 6.14453 6.17604 6.27108 6.34168
6.59749 6.63569 6.71315 6.90319 6.97324 7.32984 7.61817 7.98297
8.34741 8.96317 9.74202 10.13275 11.22666
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.018537 B = 0.003478 C = 0.003315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1510.115943 B = 8048.227676 C = 8445.639203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.023 3.977
3 Si 0.881 3.119
4 H -0.291 1.291
5 H -0.303 1.303
6 H -0.269 1.269
7 C -0.258 4.258
8 H 0.086 0.914
9 N -0.605 5.605
10 C 0.154 3.846
11 C -0.118 4.118
12 C 0.116 3.884
13 C -0.155 4.155
14 C 0.135 3.865
15 C 0.089 3.911
16 N -0.598 5.598
17 C 0.511 3.489
18 O -0.514 6.514
19 C 0.069 3.931
20 F -0.178 7.178
21 C -0.166 4.166
22 C 0.046 3.954
23 O -0.363 6.363
24 C 0.037 3.963
25 C 0.056 3.944
26 C 0.045 3.955
27 O -0.359 6.359
28 H 0.262 0.738
29 H 0.064 0.936
30 H 0.032 0.968
31 H 0.079 0.921
32 H 0.065 0.935
33 H 0.054 0.946
34 H 0.075 0.925
35 H 0.070 0.930
36 H 0.028 0.972
37 H 0.102 0.898
38 H 0.077 0.923
39 H 0.116 0.884
40 H 0.102 0.898
41 H 0.070 0.930
42 H 0.106 0.894
43 H 0.087 0.913
44 H 0.102 0.898
45 H 0.080 0.920
46 H 0.102 0.898
47 H 0.105 0.895
48 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.415 -1.229 -12.961 25.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.176 4.176
3 Si 0.712 3.288
4 H -0.219 1.219
5 H -0.232 1.232
6 H -0.194 1.194
7 C -0.386 4.386
8 H 0.104 0.896
9 N -0.329 5.329
10 C 0.028 3.972
11 C -0.158 4.158
12 C 0.076 3.924
13 C -0.195 4.195
14 C 0.009 3.991
15 C -0.033 4.033
16 N -0.331 5.331
17 C 0.295 3.705
18 O -0.389 6.389
19 C 0.047 3.953
20 F -0.159 7.159
21 C -0.204 4.204
22 C -0.030 4.030
23 O -0.282 6.282
24 C -0.040 4.040
25 C -0.067 4.067
26 C -0.033 4.033
27 O -0.277 6.277
28 H 0.072 0.928
29 H 0.082 0.918
30 H 0.050 0.950
31 H 0.097 0.903
32 H 0.084 0.916
33 H 0.072 0.928
34 H 0.093 0.907
35 H 0.088 0.912
36 H 0.046 0.954
37 H 0.120 0.880
38 H 0.096 0.904
39 H 0.135 0.865
40 H 0.121 0.879
41 H 0.088 0.912
42 H 0.124 0.876
43 H 0.105 0.895
44 H 0.120 0.880
45 H 0.099 0.901
46 H 0.120 0.880
47 H 0.123 0.877
48 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 21.024 -1.694 -13.102 24.830
hybrid contribution 0.237 1.499 -0.134 1.523
sum 21.261 -0.195 -13.236 25.045
Atomic orbital electron populations
1.69836 1.05705 1.26489 1.53193 1.25272 0.95213 0.97532 0.99597
0.86969 0.80202 0.84793 0.76879 1.21873 1.23167 1.19398 1.18941
0.84956 0.94763 1.39962 0.89616 1.44345 1.08569 1.33432 1.46524
1.20819 0.92374 0.91235 0.92748 1.22005 0.99185 0.96167 0.98437
1.21673 0.87483 0.92370 0.90888 1.22559 0.98100 0.99248 0.99577
1.21203 0.96866 0.91992 0.88995 1.22463 0.96189 0.91012 0.93675
1.48082 1.41616 1.37636 1.05758 1.20279 0.83095 0.84706 0.82389
1.90739 1.36022 1.44049 1.68091 1.22523 0.98189 0.79478 0.95113
1.92884 1.96871 1.40761 1.85338 1.23720 0.99603 1.07088 0.89981
1.23687 0.86906 0.95912 0.96490 1.88952 1.57674 1.66297 1.15266
1.23786 0.91003 1.03419 0.85841 1.22872 0.92651 0.95014 0.96186
1.22890 0.96649 0.90949 0.92818 1.88029 1.53496 1.48515 1.37691
0.92820 0.91790 0.94979 0.90284 0.91643 0.92786 0.90651 0.91195
0.95410 0.87957 0.90444 0.86537 0.87934 0.91211 0.87560 0.89538
0.87999 0.90142 0.87963 0.87713 0.91954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.18 13.97 55.49 0.78 -27.40 16
2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16
3 Si 0.88 22.78 24.35 -169.99 -4.14 18.64 16
4 H -0.29 -7.30 6.62 56.52 0.37 -6.93 16
5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16
6 H -0.27 -6.86 6.64 56.52 0.38 -6.48 16
7 C -0.26 -7.26 10.04 -15.06 -0.15 -7.41 16
8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16
9 N -0.61 -14.50 2.77 -172.31 -0.48 -14.98 16
10 C 0.15 3.04 6.28 -3.71 -0.02 3.02 16
11 C -0.12 -1.90 5.10 -26.64 -0.14 -2.03 16
12 C 0.12 1.81 0.68 -90.73 -0.06 1.75 16
13 C -0.16 -2.86 4.31 -26.64 -0.11 -2.98 16
14 C 0.14 3.02 3.97 -3.70 -0.01 3.00 16
15 C 0.09 1.19 5.26 -3.79 -0.02 1.17 16
16 N -0.60 -7.35 2.53 -172.57 -0.44 -7.78 16
17 C 0.51 6.63 6.62 -10.99 -0.07 6.56 16
18 O -0.51 -8.18 14.89 5.55 0.08 -8.09 16
19 C 0.07 0.70 1.11 -90.25 -0.10 0.60 16
20 F -0.18 -1.88 14.48 2.25 0.03 -1.85 16
21 C -0.17 -1.49 6.37 -24.72 -0.16 -1.65 16
22 C 0.05 0.34 7.72 38.21 0.29 0.63 16
23 O -0.36 -3.47 11.52 -35.23 -0.41 -3.87 16
24 C 0.04 0.31 6.11 37.73 0.23 0.54 16
25 C 0.06 0.55 5.93 -3.53 -0.02 0.53 16
26 C 0.04 0.54 6.60 37.31 0.25 0.79 16
27 O -0.36 -5.51 9.00 -35.23 -0.32 -5.83 16
28 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
29 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16
30 H 0.03 0.64 7.82 -51.93 -0.41 0.23 16
31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16
33 H 0.05 0.94 6.15 -51.93 -0.32 0.62 16
34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16
35 H 0.07 1.73 4.49 -51.93 -0.23 1.50 16
36 H 0.03 0.63 6.77 -51.93 -0.35 0.28 16
37 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16
38 H 0.08 0.92 8.13 -51.93 -0.42 0.49 16
39 H 0.12 1.20 6.81 -51.93 -0.35 0.85 16
40 H 0.10 0.82 8.12 -51.93 -0.42 0.40 16
41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16
43 H 0.09 0.57 8.00 -51.93 -0.42 0.15 16
44 H 0.10 0.82 7.69 -51.93 -0.40 0.42 16
45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
46 H 0.10 0.87 4.40 -51.93 -0.23 0.64 16
47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
48 H 0.06 0.86 6.29 -51.93 -0.33 0.53 16
LS Contribution 358.25 15.07 5.40 5.40
Total: -1.00 -33.78 358.25 -6.91 -40.69
By element:
Atomic # 1 Polarization: 7.22 SS G_CDS: -7.23 Total: -0.01 kcal
Atomic # 6 Polarization: 5.28 SS G_CDS: -0.19 Total: 5.09 kcal
Atomic # 7 Polarization: -50.03 SS G_CDS: -0.14 Total: -50.17 kcal
Atomic # 8 Polarization: -17.15 SS G_CDS: -0.64 Total: -17.79 kcal
Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal
Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -33.78 -6.91 -40.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000949166973.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.507 kcal
(2) G-P(sol) polarization free energy of solvation -33.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds