Wall clock time and date at job start Sat Apr 11 2020 06:37:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86797 * 120.00058 * 2 1
4 4 H 1.48499 * 109.47233 * 272.95904 * 3 2 1
5 5 H 1.48496 * 109.47182 * 32.95584 * 3 2 1
6 6 H 1.48502 * 109.47262 * 152.95560 * 3 2 1
7 7 C 1.38816 * 119.99874 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00326 * 339.36511 * 7 2 1
9 9 N 1.36939 * 119.99638 * 159.37066 * 7 2 1
10 10 C 1.46923 * 120.63924 * 152.63167 * 9 7 2
11 11 C 1.53189 * 108.77534 * 126.30557 * 10 9 7
12 12 C 1.52992 * 109.34857 * 54.57274 * 11 10 9
13 13 C 1.52981 * 109.63728 * 298.78800 * 12 11 10
14 14 C 1.46934 * 120.64270 * 332.60294 * 9 7 2
15 15 C 1.52805 * 109.44203 * 178.98602 * 12 11 10
16 16 N 1.47152 * 108.65263 * 188.07815 * 15 12 11
17 17 C 1.34779 * 120.98803 * 230.41180 * 16 15 12
18 18 O 1.21286 * 119.99662 * 359.72134 * 17 16 15
19 19 C 1.50694 * 120.00024 * 179.44881 * 17 16 15
20 20 F 1.39900 * 110.43694 * 309.18253 * 19 17 16
21 21 C 1.54807 * 110.48808 * 186.49849 * 19 17 16
22 22 C 1.54999 * 102.09553 * 220.44218 * 21 19 17
23 23 O 1.44386 * 103.48770 * 37.01955 * 22 21 19
24 24 C 1.43744 * 106.97489 * 319.94378 * 23 22 21
25 25 C 1.47153 * 118.02442 * 50.14341 * 16 15 12
26 26 C 1.53297 * 108.37561 * 309.67673 * 25 16 15
27 27 O 1.42901 * 109.54328 * 59.04219 * 12 11 10
28 28 H 0.96996 * 119.99836 * 359.97438 * 1 2 3
29 29 H 1.09002 * 109.59181 * 6.51570 * 10 9 7
30 30 H 1.08999 * 109.58663 * 246.09294 * 10 9 7
31 31 H 1.09005 * 109.49157 * 294.61148 * 11 10 9
32 32 H 1.09007 * 109.51736 * 174.55439 * 11 10 9
33 33 H 1.08996 * 109.49537 * 181.17352 * 13 12 11
34 34 H 1.09000 * 109.49238 * 301.25158 * 13 12 11
35 35 H 1.08998 * 109.58273 * 353.48093 * 14 9 7
36 36 H 1.09002 * 109.58381 * 113.90603 * 14 9 7
37 37 H 1.09006 * 109.60547 * 68.24405 * 15 12 11
38 38 H 1.09001 * 109.50812 * 307.85471 * 15 12 11
39 39 H 1.09006 * 110.90851 * 338.64115 * 21 19 17
40 40 H 1.09000 * 110.91095 * 102.24213 * 21 19 17
41 41 H 1.08996 * 110.61789 * 278.52422 * 22 21 19
42 42 H 1.08997 * 110.62393 * 155.51875 * 22 21 19
43 43 H 1.08995 * 109.87819 * 267.08801 * 24 23 22
44 44 H 1.09003 * 109.88120 * 145.93556 * 24 23 22
45 45 H 1.08999 * 109.68639 * 69.40031 * 25 16 15
46 46 H 1.09003 * 109.68242 * 189.91675 * 25 16 15
47 47 H 1.08999 * 109.51263 * 172.27452 * 26 25 16
48 48 H 1.08996 * 109.51142 * 292.42769 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4351 2.0825 -1.3982
5 1 1.4803 2.6338 0.7616
6 1 3.5776 1.4229 0.6366
7 6 2.0102 -1.2022 0.0005
8 1 1.5222 -2.1074 0.3305
9 7 3.3138 -1.2403 -0.4173
10 6 4.2351 -2.2631 0.0963
11 6 4.8736 -2.9920 -1.0902
12 6 5.5257 -1.9689 -2.0222
13 6 4.4611 -1.0103 -2.5587
14 6 3.8180 -0.2596 -1.3883
15 6 6.1852 -2.6957 -3.1934
16 7 6.9687 -1.7221 -3.9704
17 6 6.8286 -1.6277 -5.3075
18 8 6.0514 -2.3551 -5.8887
19 6 7.6332 -0.6141 -6.0797
20 9 7.5079 0.6531 -5.5003
21 6 7.1858 -0.5821 -7.5613
22 6 8.5385 -0.4479 -8.3062
23 8 9.4364 -1.2638 -7.5235
24 6 9.1144 -1.0349 -6.1414
25 6 7.9053 -0.8506 -3.2433
26 6 7.1560 -0.2078 -2.0706
27 8 6.5159 -1.2305 -1.3035
28 1 -0.4850 0.8400 0.0004
29 1 3.6843 -2.9762 0.7098
30 1 5.0124 -1.7875 0.6943
31 1 4.1063 -3.5426 -1.6345
32 1 5.6305 -3.6869 -0.7261
33 1 4.9247 -0.2955 -3.2385
34 1 3.6971 -1.5765 -3.0914
35 1 2.9918 0.3496 -1.7548
36 1 4.5615 0.3785 -0.9107
37 1 5.4175 -3.1389 -3.8278
38 1 6.8435 -3.4767 -2.8130
39 1 6.6811 -1.5086 -7.8354
40 1 6.5472 0.2794 -7.7564
41 1 8.8711 0.5901 -8.3138
42 1 8.4570 -0.8334 -9.3225
43 1 9.7427 -0.2392 -5.7413
44 1 9.2636 -1.9507 -5.5694
45 1 8.7396 -1.4420 -2.8660
46 1 8.2782 -0.0742 -3.9113
47 1 7.8619 0.3324 -1.4397
48 1 6.4055 0.4838 -2.4533
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000949166973.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:49
Heat of formation + Delta-G solvation = -144.560542 kcal
Electronic energy + Delta-G solvation = -32986.167292 eV
Core-core repulsion = 28570.331540 eV
Total energy + Delta-G solvation = -4415.835752 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 342.179 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-49.39834 -42.01548 -40.71788 -39.49862 -38.08445 -35.99238 -34.82784 -33.31347
-32.83252 -32.10560 -30.68666 -30.29384 -28.48017 -26.07123 -25.10391 -24.55150
-24.27111 -23.58905 -22.27784 -20.83446 -20.44975 -19.01667 -18.83023 -18.22152
-18.02275 -17.45033 -17.06285 -16.73865 -16.56907 -16.37215 -16.14125 -16.04511
-15.82783 -15.73065 -15.51187 -15.21671 -15.06271 -14.76895 -14.49043 -14.22282
-14.19600 -13.74860 -13.56936 -13.40734 -13.25570 -13.12520 -12.85800 -12.80265
-12.67458 -12.56458 -12.30695 -12.22518 -12.04759 -11.89100 -11.70774 -11.54057
-11.50752 -11.06552 -10.96910 -10.80802 -10.73022 -9.72837 -8.95299 -8.19901
-5.50707 1.04206 1.23980 1.35567 1.45476 1.48464 2.37927 2.58643
2.62222 2.68652 3.01679 3.02132 3.08831 3.29395 3.57475 3.61341
3.66954 3.76290 3.84256 3.85707 4.05945 4.10734 4.18518 4.23186
4.31618 4.37117 4.42775 4.49657 4.57138 4.57580 4.60345 4.63613
4.70122 4.72670 4.74800 4.81838 4.86650 4.88141 4.99474 5.05768
5.08198 5.16178 5.42029 5.55943 5.84051 5.98723 6.10275 6.19221
6.65663 6.88841 7.59615 8.01697 9.00093
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.018537 B = 0.003478 C = 0.003315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1510.115943 B = 8048.227676 C = 8445.639203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.035 4.035
3 Si 0.943 3.057
4 H -0.282 1.282
5 H -0.308 1.308
6 H -0.260 1.260
7 C -0.246 4.246
8 H 0.057 0.943
9 N -0.619 5.619
10 C 0.150 3.850
11 C -0.111 4.111
12 C 0.123 3.877
13 C -0.145 4.145
14 C 0.136 3.864
15 C 0.095 3.905
16 N -0.599 5.599
17 C 0.504 3.496
18 O -0.552 6.552
19 C 0.070 3.930
20 F -0.179 7.179
21 C -0.169 4.169
22 C 0.050 3.950
23 O -0.381 6.381
24 C 0.041 3.959
25 C 0.059 3.941
26 C 0.036 3.964
27 O -0.370 6.370
28 H 0.261 0.739
29 H 0.060 0.940
30 H 0.038 0.962
31 H 0.072 0.928
32 H 0.101 0.899
33 H 0.063 0.937
34 H 0.056 0.944
35 H 0.041 0.959
36 H 0.033 0.967
37 H 0.085 0.915
38 H 0.103 0.897
39 H 0.098 0.902
40 H 0.108 0.892
41 H 0.088 0.912
42 H 0.122 0.878
43 H 0.111 0.889
44 H 0.106 0.894
45 H 0.109 0.891
46 H 0.119 0.881
47 H 0.134 0.866
48 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.427 -0.718 -13.658 28.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.603 5.603
2 C -0.230 4.230
3 Si 0.773 3.227
4 H -0.209 1.209
5 H -0.237 1.237
6 H -0.185 1.185
7 C -0.376 4.376
8 H 0.074 0.926
9 N -0.343 5.343
10 C 0.025 3.975
11 C -0.150 4.150
12 C 0.083 3.917
13 C -0.185 4.185
14 C 0.011 3.989
15 C -0.027 4.027
16 N -0.331 5.331
17 C 0.290 3.710
18 O -0.430 6.430
19 C 0.048 3.952
20 F -0.160 7.160
21 C -0.207 4.207
22 C -0.026 4.026
23 O -0.300 6.300
24 C -0.036 4.036
25 C -0.062 4.062
26 C -0.041 4.041
27 O -0.289 6.289
28 H 0.070 0.930
29 H 0.078 0.922
30 H 0.056 0.944
31 H 0.091 0.909
32 H 0.120 0.880
33 H 0.081 0.919
34 H 0.075 0.925
35 H 0.059 0.941
36 H 0.050 0.950
37 H 0.104 0.896
38 H 0.121 0.879
39 H 0.117 0.883
40 H 0.127 0.873
41 H 0.106 0.894
42 H 0.140 0.860
43 H 0.129 0.871
44 H 0.124 0.876
45 H 0.127 0.873
46 H 0.137 0.863
47 H 0.152 0.848
48 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 25.106 -1.181 -13.799 28.672
hybrid contribution -1.015 1.286 0.097 1.641
sum 24.091 0.105 -13.702 27.715
Atomic orbital electron populations
1.69961 1.07295 1.27131 1.55896 1.25880 0.95821 1.00797 1.00505
0.85948 0.78969 0.80660 0.77141 1.20929 1.23664 1.18485 1.18921
0.86749 0.93647 1.38274 0.92565 1.44488 1.07848 1.34719 1.47289
1.20988 0.91697 0.90361 0.94418 1.21906 0.99815 0.96443 0.96881
1.21479 0.87032 0.91668 0.91518 1.22401 0.98526 0.99596 0.97959
1.21133 0.95961 0.91908 0.89901 1.22270 0.96446 0.91467 0.92515
1.48204 1.41601 1.37574 1.05733 1.20820 0.82768 0.84791 0.82609
1.90723 1.37676 1.45673 1.68921 1.22535 0.99166 0.78570 0.94913
1.92880 1.96974 1.40717 1.85406 1.23741 1.00806 1.06467 0.89729
1.23830 0.85268 0.96818 0.96694 1.88932 1.58095 1.67076 1.15910
1.23868 0.89643 1.04447 0.85678 1.23037 0.92375 0.95440 0.95379
1.23158 0.96724 0.90195 0.94029 1.88007 1.53158 1.49202 1.38519
0.92985 0.92183 0.94409 0.90920 0.88040 0.91863 0.92545 0.94118
0.94955 0.89648 0.87888 0.88320 0.87325 0.89390 0.86031 0.87069
0.87620 0.87277 0.86300 0.84827 0.93936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -61.40 13.97 21.65 0.30 -61.10 16
2 C -0.04 -2.12 5.23 84.86 0.44 -1.68 16
3 Si 0.94 48.07 24.35 68.60 1.67 49.74 16
4 H -0.28 -13.81 6.62 99.48 0.66 -13.15 16
5 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16
6 H -0.26 -12.73 6.64 99.48 0.66 -12.07 16
7 C -0.25 -14.26 10.04 84.03 0.84 -13.42 16
8 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16
9 N -0.62 -29.78 2.77 -699.08 -1.94 -31.71 16
10 C 0.15 5.77 6.28 86.36 0.54 6.31 16
11 C -0.11 -3.35 5.10 30.65 0.16 -3.20 16
12 C 0.12 3.60 0.68 -10.87 -0.01 3.59 16
13 C -0.15 -5.28 4.31 30.65 0.13 -5.15 16
14 C 0.14 6.03 3.97 86.36 0.34 6.37 16
15 C 0.10 2.34 5.26 86.19 0.45 2.79 16
16 N -0.60 -13.15 2.53 -818.27 -2.07 -15.22 16
17 C 0.50 12.28 6.62 87.65 0.58 12.86 16
18 O -0.55 -17.44 14.89 -3.05 -0.05 -17.48 16
19 C 0.07 1.26 1.11 -10.55 -0.01 1.25 16
20 F -0.18 -3.28 14.48 44.97 0.65 -2.63 16
21 C -0.17 -2.80 6.37 31.89 0.20 -2.60 16
22 C 0.05 0.59 7.72 72.67 0.56 1.15 16
23 O -0.38 -6.23 11.52 -148.98 -1.72 -7.94 16
24 C 0.04 0.56 6.11 72.35 0.44 1.00 16
25 C 0.06 0.93 5.93 86.35 0.51 1.44 16
26 C 0.04 0.75 6.60 72.08 0.48 1.22 16
27 O -0.37 -10.15 9.00 -148.98 -1.34 -11.49 16
28 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16
29 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16
30 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16
31 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16
32 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16
33 H 0.06 2.16 6.15 -2.39 -0.01 2.14 16
34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
35 H 0.04 2.03 4.49 -2.39 -0.01 2.02 16
36 H 0.03 1.41 6.77 -2.39 -0.02 1.40 16
37 H 0.09 2.42 7.07 -2.38 -0.02 2.41 16
38 H 0.10 2.04 8.13 -2.39 -0.02 2.02 16
39 H 0.10 2.01 6.81 -2.38 -0.02 1.99 16
40 H 0.11 1.60 8.12 -2.39 -0.02 1.58 16
41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16
43 H 0.11 0.97 8.00 -2.39 -0.02 0.95 16
44 H 0.11 1.34 7.69 -2.39 -0.02 1.32 16
45 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16
46 H 0.12 1.51 4.40 -2.39 -0.01 1.50 16
47 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16
48 H 0.04 1.06 6.29 -2.39 -0.02 1.04 16
Total: -1.00 -75.71 358.25 2.07 -73.64
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: 0.88 Total: 12.23 kcal
Atomic # 6 Polarization: 6.30 SS G_CDS: 5.67 Total: 11.97 kcal
Atomic # 7 Polarization: -104.33 SS G_CDS: -3.70 Total: -108.03 kcal
Atomic # 8 Polarization: -33.81 SS G_CDS: -3.10 Total: -36.92 kcal
Atomic # 9 Polarization: -3.28 SS G_CDS: 0.65 Total: -2.63 kcal
Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal
Total: -75.71 2.07 -73.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000949166973.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -70.919 kcal
(2) G-P(sol) polarization free energy of solvation -75.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.561 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds