Wall clock time and date at job start Sat Apr 11 2020 06:37:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86803 * 120.00040 * 2 1
4 4 H 1.48492 * 109.47253 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47068 * 300.00292 * 3 2 1
6 6 H 1.48501 * 109.46760 * 60.00283 * 3 2 1
7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1
9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1
10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2
11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7
12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7
13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9
14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10
15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12
16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13
17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13
18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14
19 19 O 1.21573 * 119.99867 * 0.02562 * 18 17 15
20 20 C 1.47706 * 119.99902 * 180.02562 * 18 17 15
21 21 C 1.41507 * 126.51552 * 179.71085 * 20 18 17
22 22 C 1.35370 * 105.49963 * 179.90098 * 21 20 18
23 23 N 1.35032 * 107.22959 * 0.36017 * 22 21 20
24 24 C 1.46500 * 124.88386 * 179.76054 * 23 22 21
25 25 C 1.52995 * 109.46886 * 125.02222 * 24 23 22
26 26 F 1.39906 * 109.46887 * 174.99802 * 25 24 23
27 27 F 1.39900 * 109.47473 * 295.00347 * 25 24 23
28 28 N 1.28465 * 110.23137 * 359.75980 * 23 22 21
29 29 C 1.53002 * 109.46799 * 205.00357 * 10 9 7
30 30 H 0.97001 * 120.00026 * 359.97438 * 1 2 3
31 31 H 0.97002 * 119.99599 * 0.02562 * 9 7 2
32 32 H 1.09001 * 109.47194 * 299.99493 * 12 10 9
33 33 H 1.08992 * 109.47399 * 59.99666 * 12 10 9
34 34 H 1.09000 * 109.47437 * 180.02562 * 13 12 10
35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 10
36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 12
37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 12
38 38 H 0.97001 * 119.99986 * 265.00712 * 17 15 14
39 39 H 1.07994 * 127.24995 * 0.02562 * 21 20 18
40 40 H 1.07996 * 126.37971 * 180.15547 * 22 21 20
41 41 H 1.08994 * 109.47160 * 245.02596 * 24 23 22
42 42 H 1.09000 * 109.46880 * 5.02930 * 24 23 22
43 43 H 1.09000 * 109.47352 * 55.00350 * 25 24 23
44 44 H 1.09002 * 109.47075 * 299.99543 * 29 10 9
45 45 H 1.08996 * 109.47407 * 60.00500 * 29 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7101 1.3464 -0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8914 2.3964 1.2126
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9688 -3.5505 -0.5899
12 6 2.4218 -4.0356 1.4365
13 6 3.1874 -5.3603 1.4365
14 6 2.3107 -6.4559 0.8266
15 6 1.9469 -6.0771 -0.6104
16 1 1.3220 -6.8575 -1.0448
17 7 3.1710 -5.9337 -1.4025
18 6 3.7381 -7.0174 -1.9687
19 8 3.2335 -8.1138 -1.8226
20 6 4.9725 -6.8728 -2.7669
21 6 5.6832 -7.9113 -3.4141
22 6 6.7350 -7.3089 -4.0167
23 7 6.6561 -5.9906 -3.7351
24 6 7.6093 -4.9773 -4.1941
25 6 6.8584 -3.8696 -4.9356
26 9 7.7512 -2.8470 -5.2743
27 9 6.2855 -4.3930 -6.0997
28 7 5.6248 -5.7529 -3.0069
29 6 1.1808 -4.7521 -0.6103
30 1 -0.4850 0.8401 0.0004
31 1 0.3555 -2.3881 -0.0005
32 1 3.0467 -3.2553 1.8709
33 1 1.5111 -4.1418 2.0259
34 1 3.4462 -5.6305 2.4602
35 1 4.0981 -5.2536 0.8472
36 1 1.4000 -6.5626 1.4159
37 1 2.8559 -7.3998 0.8270
38 1 3.5734 -5.0589 -1.5193
39 1 5.4369 -8.9628 -3.4265
40 1 7.4973 -7.7930 -4.6091
41 1 8.1291 -4.5521 -3.3356
42 1 8.3337 -5.4378 -4.8659
43 1 6.0742 -3.4692 -4.2931
44 1 0.2701 -4.8584 -0.0208
45 1 0.9217 -4.4823 -1.6340
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981157984.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:33
Heat of formation + Delta-G solvation = -77.793067 kcal
Electronic energy + Delta-G solvation = -30288.263138 eV
Core-core repulsion = 25784.155087 eV
Total energy + Delta-G solvation = -4504.108051 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-50.13742 -48.15600 -43.69732 -41.09054 -39.13760 -36.14829 -35.20983 -34.42196
-32.92675 -31.87989 -31.06544 -30.03308 -29.42143 -25.90507 -25.60301 -23.80650
-23.19810 -22.56677 -22.47599 -21.33564 -20.04993 -19.39313 -19.04310 -18.67774
-18.37796 -18.09906 -17.26023 -16.84190 -16.67181 -16.43559 -16.14843 -15.64717
-15.47766 -15.08864 -15.01388 -14.96929 -14.83870 -14.75783 -14.51177 -14.21383
-13.90281 -13.87211 -13.56004 -13.44366 -13.09242 -13.03141 -12.89541 -12.81851
-12.37275 -12.20603 -12.02320 -11.95576 -11.90067 -11.60886 -11.46852 -11.22127
-11.00116 -10.84757 -10.38732 -10.15365 -9.96920 -8.97939 -7.92262 -5.20009
0.44967 1.13453 1.24977 1.47721 1.47812 1.57475 2.18449 2.35602
2.46443 2.56974 3.16238 3.31277 3.41366 3.43466 3.64857 3.67255
3.88036 3.92977 3.95307 3.98892 4.27227 4.29522 4.30651 4.35621
4.36629 4.56464 4.66763 4.70553 4.72632 4.75442 4.82612 4.96287
5.09855 5.18626 5.23607 5.30108 5.37421 5.48585 5.51651 5.55812
5.66236 5.73723 6.30170 6.43098 6.80890 7.15970 7.36453 8.12837
8.35746 9.31549
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.008018 B = 0.003761 C = 0.002735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3491.349439 B = 7443.478384 C =10234.929424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.970 5.970
2 C -0.075 4.075
3 Si 0.966 3.034
4 H -0.265 1.265
5 H -0.296 1.296
6 H -0.296 1.296
7 C -0.232 4.232
8 H 0.075 0.925
9 N -0.737 5.737
10 C 0.177 3.823
11 H 0.040 0.960
12 C -0.126 4.126
13 C -0.104 4.104
14 C -0.121 4.121
15 C 0.157 3.843
16 H 0.087 0.913
17 N -0.701 5.701
18 C 0.601 3.399
19 O -0.567 6.567
20 C -0.032 4.032
21 C -0.197 4.197
22 C 0.014 3.986
23 N -0.285 5.285
24 C 0.078 3.922
25 C 0.250 3.750
26 F -0.197 7.197
27 F -0.212 7.212
28 N -0.282 5.282
29 C -0.121 4.121
30 H 0.249 0.751
31 H 0.372 0.628
32 H 0.040 0.960
33 H 0.051 0.949
34 H 0.070 0.930
35 H 0.055 0.945
36 H 0.083 0.917
37 H 0.064 0.936
38 H 0.408 0.592
39 H 0.170 0.830
40 H 0.232 0.768
41 H 0.148 0.852
42 H 0.167 0.833
43 H 0.120 0.880
44 H 0.082 0.918
45 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.749 -16.481 -8.254 26.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.621 5.621
2 C -0.267 4.267
3 Si 0.796 3.204
4 H -0.189 1.189
5 H -0.223 1.223
6 H -0.223 1.223
7 C -0.364 4.364
8 H 0.093 0.907
9 N -0.376 5.376
10 C 0.069 3.931
11 H 0.058 0.942
12 C -0.166 4.166
13 C -0.143 4.143
14 C -0.159 4.159
15 C 0.052 3.948
16 H 0.105 0.895
17 N -0.352 5.352
18 C 0.387 3.613
19 O -0.445 6.445
20 C -0.192 4.192
21 C -0.225 4.225
22 C -0.128 4.128
23 N -0.074 5.074
24 C -0.043 4.043
25 C 0.196 3.804
26 F -0.179 7.179
27 F -0.194 7.194
28 N -0.119 5.119
29 C -0.160 4.160
30 H 0.058 0.942
31 H 0.204 0.796
32 H 0.059 0.941
33 H 0.070 0.930
34 H 0.089 0.911
35 H 0.074 0.926
36 H 0.102 0.898
37 H 0.083 0.917
38 H 0.245 0.755
39 H 0.188 0.812
40 H 0.248 0.752
41 H 0.166 0.834
42 H 0.184 0.816
43 H 0.137 0.863
44 H 0.101 0.899
45 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 18.602 -15.872 -8.015 25.733
hybrid contribution -0.207 0.970 -0.251 1.023
sum 18.395 -14.902 -8.266 25.076
Atomic orbital electron populations
1.69814 1.06559 1.25771 1.59957 1.25477 0.96265 1.00820 1.04156
0.85174 0.78400 0.80339 0.76501 1.18943 1.22322 1.22314 1.19622
0.91346 0.85184 1.40290 0.90695 1.42634 1.05454 1.00925 1.88612
1.20352 0.93863 0.84732 0.94146 0.94160 1.22091 0.99553 0.96339
0.98650 1.21404 0.98067 0.93904 1.00894 1.21856 1.01056 0.98262
0.94733 1.20940 0.85014 0.97204 0.91642 0.89476 1.46061 1.27474
1.10399 1.51277 1.17154 0.82151 0.84058 0.77952 1.90746 1.64110
1.26742 1.62871 1.21953 0.99107 0.91781 1.06369 1.22046 0.96574
1.01005 1.02859 1.23550 1.02542 0.82845 1.03853 1.45407 1.18567
1.08050 1.35347 1.23276 0.89510 0.88123 1.03380 1.22221 0.89761
0.85122 0.83340 1.93027 1.70386 1.60944 1.93501 1.93009 1.85838
1.87273 1.53276 1.73454 0.99700 1.26488 1.12216 1.21986 0.99146
0.93443 1.01439 0.94192 0.79584 0.94081 0.93002 0.91150 0.92622
0.89805 0.91717 0.75500 0.81231 0.75154 0.83401 0.81550 0.86268
0.89927 0.92194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16
2 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16
3 Si 0.97 45.75 29.55 68.60 2.03 47.78 16
4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16
5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16
6 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
7 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16
8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16
9 N -0.74 -36.17 5.12 -322.94 -1.65 -37.82 16
10 C 0.18 6.67 2.60 44.99 0.12 6.78 16
11 H 0.04 1.54 6.44 -2.39 -0.02 1.52 16
12 C -0.13 -4.31 5.50 30.59 0.17 -4.14 16
13 C -0.10 -2.83 5.77 30.60 0.18 -2.65 16
14 C -0.12 -3.10 5.60 30.59 0.17 -2.93 16
15 C 0.16 4.38 2.78 45.01 0.13 4.51 16
16 H 0.09 2.48 7.58 -2.39 -0.02 2.46 16
17 N -0.70 -19.77 4.23 -445.44 -1.88 -21.66 16
18 C 0.60 17.76 7.79 86.75 0.68 18.44 16
19 O -0.57 -19.36 16.59 -3.95 -0.07 -19.43 16
20 C -0.03 -0.81 7.13 42.46 0.30 -0.51 16
21 C -0.20 -3.76 10.81 22.41 0.24 -3.52 16
22 C 0.01 0.17 11.40 83.54 0.95 1.12 16
23 N -0.29 -4.17 3.39 -347.97 -1.18 -5.35 16
24 C 0.08 0.57 6.59 86.38 0.57 1.14 16
25 C 0.25 3.48 5.37 71.98 0.39 3.86 16
26 F -0.20 -3.09 17.34 44.97 0.78 -2.31 16
27 F -0.21 -4.06 17.32 44.97 0.78 -3.28 16
28 N -0.28 -6.31 11.27 -48.18 -0.54 -6.86 16
29 C -0.12 -3.87 5.08 30.61 0.16 -3.72 16
30 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16
31 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16
32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
35 H 0.06 1.52 7.60 -2.39 -0.02 1.50 16
36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
38 H 0.41 11.65 6.59 -92.71 -0.61 11.04 16
39 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16
40 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16
41 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16
42 H 0.17 -0.05 8.04 -2.39 -0.02 -0.07 16
43 H 0.12 1.89 7.96 -2.39 -0.02 1.87 16
44 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16
45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
Total: -1.00 -74.03 380.44 3.59 -70.45
By element:
Atomic # 1 Polarization: 34.74 SS G_CDS: -0.30 Total: 34.44 kcal
Atomic # 6 Polarization: -2.54 SS G_CDS: 5.34 Total: 2.80 kcal
Atomic # 7 Polarization: -125.47 SS G_CDS: -4.98 Total: -130.44 kcal
Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.43 kcal
Atomic # 9 Polarization: -7.15 SS G_CDS: 1.56 Total: -5.59 kcal
Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal
Total: -74.03 3.59 -70.45 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981157984.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.347 kcal
(2) G-P(sol) polarization free energy of solvation -74.034 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds