Wall clock time and date at job start Sat Apr 11 2020 06:38:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.34447 * 124.92179 * 2 1
4 4 C 1.34808 * 110.88855 * 179.97438 * 3 2 1
5 5 C 1.38942 * 133.49049 * 180.02562 * 4 3 2
6 6 C 1.37855 * 119.81516 * 180.02562 * 5 4 3
7 7 C 1.38748 * 120.67968 * 359.95467 * 6 5 4
8 8 C 1.36728 * 120.42331 * 0.02771 * 7 6 5
9 9 C 1.39408 * 119.71771 * 359.97438 * 8 7 6
10 10 C 1.33994 * 124.92336 * 179.97438 * 2 1 3
11 11 C 1.50698 * 126.90576 * 0.02562 * 10 2 1
12 12 C 1.50699 * 109.47314 * 269.97180 * 11 10 2
13 13 O 1.21284 * 119.99890 * 359.97438 * 12 11 10
14 14 N 1.34774 * 120.00242 * 179.97438 * 12 11 10
15 15 C 1.47421 * 125.64894 * 0.02780 * 14 12 11
16 16 C 1.54909 * 104.83155 * 204.08763 * 15 14 12
17 17 C 1.55160 * 101.58335 * 322.99090 * 16 15 14
18 18 H 1.08997 * 110.71910 * 154.04084 * 17 16 15
19 19 N 1.46498 * 110.72010 * 277.13701 * 17 16 15
20 20 C 1.36933 * 120.00180 * 209.44742 * 19 17 16
21 21 H 1.08004 * 119.99845 * 359.97438 * 20 19 17
22 22 C 1.38813 * 120.00144 * 179.97438 * 20 19 17
23 23 N 1.31615 * 119.99880 * 179.97438 * 22 20 19
24 24 Si 1.86795 * 120.00078 * 0.02562 * 22 20 19
25 25 H 1.48490 * 109.47697 * 89.99514 * 24 22 20
26 26 H 1.48499 * 109.47303 * 210.00038 * 24 22 20
27 27 H 1.48503 * 109.46928 * 329.99323 * 24 22 20
28 28 C 1.47026 * 125.64671 * 179.71573 * 14 12 11
29 29 H 1.08998 * 109.88413 * 59.56400 * 28 14 12
30 30 C 1.52998 * 109.88243 * 298.39487 * 28 14 12
31 31 H 1.09002 * 109.47584 * 0.02652 * 1 2 3
32 32 H 1.09003 * 109.47473 * 120.02474 * 1 2 3
33 33 H 1.08999 * 109.47384 * 240.02341 * 1 2 3
34 34 H 1.07994 * 120.09390 * 359.94879 * 5 4 3
35 35 H 1.07992 * 119.65719 * 179.97438 * 6 5 4
36 36 H 1.08007 * 119.78253 * 180.02562 * 7 6 5
37 37 H 1.08000 * 120.14533 * 180.02562 * 8 7 6
38 38 H 1.09001 * 109.47585 * 29.97513 * 11 10 2
39 39 H 1.09006 * 109.47052 * 149.97186 * 11 10 2
40 40 H 1.08998 * 110.36898 * 322.92803 * 15 14 12
41 41 H 1.09006 * 110.36622 * 85.13956 * 15 14 12
42 42 H 1.09003 * 111.00270 * 81.06960 * 16 15 14
43 43 H 1.08996 * 111.00658 * 204.87670 * 16 15 14
44 44 H 0.96998 * 119.99950 * 29.44054 * 19 17 16
45 45 H 0.97003 * 120.00310 * 180.02562 * 23 22 20
46 46 H 1.09008 * 109.47182 * 65.52881 * 30 28 14
47 47 H 1.09001 * 109.46977 * 185.51834 * 30 28 14
48 48 H 1.08995 * 109.47699 * 305.52613 * 30 28 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.2766 1.1024 0.0000
4 6 3.5845 0.7755 0.0006
5 6 4.7566 1.5215 0.0013
6 6 5.9771 0.8805 0.0012
7 6 6.0490 -0.5051 0.0014
8 6 4.9075 -1.2576 0.0011
9 6 3.6641 -0.6271 0.0011
10 6 2.2741 -1.0986 0.0005
11 6 1.8041 -2.5305 0.0006
12 6 1.6476 -3.0077 1.4214
13 8 1.8939 -2.2590 2.3432
14 7 1.2339 -4.2665 1.6678
15 6 0.9021 -5.2772 0.6471
16 6 -0.0635 -6.2574 1.3588
17 6 0.5374 -6.3035 2.7886
18 1 -0.2287 -6.5587 3.5208
19 7 1.6502 -7.2540 2.8528
20 6 1.9293 -7.9034 4.0256
21 1 1.3292 -7.7145 4.9035
22 6 2.9834 -8.8045 4.0863
23 7 3.2519 -9.4283 5.2137
24 14 4.0218 -9.1308 2.5682
25 1 5.1621 -8.1803 2.5346
26 1 4.5384 -10.5223 2.6115
27 1 3.1901 -8.9493 1.3513
28 6 1.0450 -4.8613 2.9990
29 1 0.3063 -4.2884 3.5596
30 6 2.3756 -4.8802 3.7541
31 1 -0.3634 1.0277 -0.0005
32 1 -0.3634 -0.5142 -0.8898
33 1 -0.3634 -0.5135 0.8902
34 1 4.7117 2.6005 0.0006
35 1 6.8865 1.4629 0.0013
36 1 7.0130 -0.9922 0.0017
37 1 4.9687 -2.3359 0.0016
38 1 0.8452 -2.5983 -0.5132
39 1 2.5364 -3.1533 -0.5133
40 1 0.4079 -4.8087 -0.2040
41 1 1.8028 -5.7981 0.3222
42 1 -1.0794 -5.8627 1.3744
43 1 -0.0362 -7.2414 0.8910
44 1 2.1893 -7.4235 2.0644
45 1 3.9887 -10.0577 5.2562
46 1 2.6962 -3.8571 3.9510
47 1 2.2498 -5.4095 4.6986
48 1 3.1286 -5.3871 3.1508
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987630219.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:09
Heat of formation + Delta-G solvation = 13.506541 kcal
Electronic energy + Delta-G solvation = -30189.913115 eV
Core-core repulsion = 26211.700891 eV
Total energy + Delta-G solvation = -3978.212224 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.60996 -39.94556 -38.00705 -37.61434 -34.36747 -34.12096 -31.73786 -31.37381
-30.91174 -30.65684 -29.86830 -28.52998 -26.47346 -25.39624 -23.10602 -23.03949
-22.61708 -21.80220 -20.67853 -19.66349 -18.49530 -17.81866 -17.25492 -16.99450
-16.82333 -16.23994 -15.95246 -15.54485 -14.98272 -14.55260 -14.24061 -14.02187
-13.87219 -13.82612 -13.68948 -13.40237 -13.30480 -13.05597 -12.81301 -12.62209
-12.54639 -12.35549 -12.27573 -12.17372 -11.80140 -11.70060 -11.52057 -11.01104
-10.99022 -10.95548 -10.76984 -10.51452 -10.28645 -10.13007 -10.07077 -9.64647
-9.45737 -9.01955 -8.71652 -8.32429 -8.13472 -7.37493 -5.83761 -3.20329
0.79897 1.25748 2.13449 2.57324 2.85951 3.28859 3.30457 3.33865
3.40338 3.63201 4.24240 4.43833 4.52006 4.67004 4.71635 4.81932
4.83031 4.87980 4.97393 5.11352 5.14950 5.19695 5.19779 5.27093
5.32186 5.36389 5.43578 5.47278 5.53550 5.56566 5.64227 5.72508
5.81432 5.96145 6.09525 6.11499 6.14502 6.15036 6.30427 6.34023
6.35432 6.42532 6.52703 6.55184 6.76933 6.97892 7.07686 7.23449
7.83493 7.90465 8.34438 8.44607 9.11375 9.83717 10.02161 11.34167
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.014136 B = 0.003084 C = 0.002733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1980.305586 B = 9077.884848 C =10242.568789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.045 3.955
3 O -0.192 6.192
4 C 0.050 3.950
5 C -0.108 4.108
6 C -0.098 4.098
7 C -0.136 4.136
8 C -0.068 4.068
9 C -0.108 4.108
10 C -0.155 4.155
11 C -0.064 4.064
12 C 0.525 3.475
13 O -0.532 6.532
14 N -0.609 5.609
15 C 0.099 3.901
16 C -0.147 4.147
17 C 0.176 3.824
18 H 0.083 0.917
19 N -0.734 5.734
20 C -0.244 4.244
21 H 0.092 0.908
22 C 0.009 3.991
23 N -0.930 5.930
24 Si 0.881 3.119
25 H -0.285 1.285
26 H -0.291 1.291
27 H -0.278 1.278
28 C 0.110 3.890
29 H 0.063 0.937
30 C -0.133 4.133
31 H 0.079 0.921
32 H 0.088 0.912
33 H 0.090 0.910
34 H 0.130 0.870
35 H 0.133 0.867
36 H 0.128 0.872
37 H 0.124 0.876
38 H 0.100 0.900
39 H 0.100 0.900
40 H 0.069 0.931
41 H 0.065 0.935
42 H 0.076 0.924
43 H 0.086 0.914
44 H 0.361 0.639
45 H 0.260 0.740
46 H 0.041 0.959
47 H 0.074 0.926
48 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.516 18.588 -16.271 24.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.002 4.002
3 O -0.094 6.094
4 C 0.003 3.997
5 C -0.126 4.126
6 C -0.116 4.116
7 C -0.154 4.154
8 C -0.087 4.087
9 C -0.109 4.109
10 C -0.157 4.157
11 C -0.104 4.104
12 C 0.312 3.688
13 O -0.409 6.409
14 N -0.344 5.344
15 C -0.024 4.024
16 C -0.186 4.186
17 C 0.064 3.936
18 H 0.101 0.899
19 N -0.375 5.375
20 C -0.373 4.373
21 H 0.110 0.890
22 C -0.187 4.187
23 N -0.577 5.577
24 Si 0.711 3.289
25 H -0.211 1.211
26 H -0.217 1.217
27 H -0.204 1.204
28 C 0.005 3.995
29 H 0.081 0.919
30 C -0.191 4.191
31 H 0.098 0.902
32 H 0.107 0.893
33 H 0.109 0.891
34 H 0.148 0.852
35 H 0.151 0.849
36 H 0.146 0.854
37 H 0.142 0.858
38 H 0.118 0.882
39 H 0.118 0.882
40 H 0.087 0.913
41 H 0.083 0.917
42 H 0.094 0.906
43 H 0.104 0.896
44 H 0.195 0.805
45 H 0.070 0.930
46 H 0.060 0.940
47 H 0.092 0.908
48 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.447 19.208 -15.523 24.936
hybrid contribution 1.055 -0.524 -1.024 1.561
sum -2.392 18.684 -16.547 25.072
Atomic orbital electron populations
1.20442 0.84846 1.04361 1.03956 1.21997 0.93719 0.83216 1.01315
1.83928 1.15038 1.33784 1.76677 1.19529 0.83205 0.93440 1.03539
1.19896 0.88114 0.99568 1.05061 1.20890 0.96409 0.94633 0.99711
1.20768 0.98357 0.93880 1.02359 1.20301 0.90271 1.00115 0.97967
1.19704 0.93595 0.92914 1.04723 1.20096 0.90915 0.94398 1.10267
1.19959 1.03120 0.91924 0.95422 1.20076 0.77277 0.80568 0.90859
1.90705 1.49798 1.54185 1.46212 1.48689 1.66072 1.10835 1.08778
1.22304 0.98746 0.90037 0.91285 1.23172 0.98181 0.99378 0.97905
1.21221 0.90541 0.87218 0.94580 0.89891 1.42690 1.34808 1.48663
1.11325 1.19021 1.12195 1.17165 0.88954 0.88997 1.24642 0.98663
0.99043 0.96369 1.69687 1.32018 1.31316 1.24694 0.86622 0.81036
0.77590 0.83658 1.21122 1.21729 1.20382 1.22656 0.98463 0.95843
0.82542 0.91891 1.21771 0.96225 0.99874 1.01245 0.90215 0.89315
0.89112 0.85240 0.84911 0.85394 0.85761 0.88186 0.88215 0.91272
0.91690 0.90570 0.89588 0.80545 0.92975 0.94014 0.90750 0.92511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.67 9.86 36.01 0.35 -0.32 16
2 C 0.05 0.56 7.23 -35.80 -0.26 0.31 16
3 O -0.19 -2.65 10.58 3.91 0.04 -2.61 16
4 C 0.05 0.69 7.42 -38.47 -0.29 0.40 16
5 C -0.11 -1.20 10.07 -39.46 -0.40 -1.60 16
6 C -0.10 -0.97 10.01 -39.53 -0.40 -1.37 16
7 C -0.14 -1.47 9.98 -39.94 -0.40 -1.87 16
8 C -0.07 -0.88 10.05 -39.69 -0.40 -1.28 16
9 C -0.11 -1.55 6.38 -105.16 -0.67 -2.22 16
10 C -0.16 -2.08 4.84 -102.66 -0.50 -2.58 16
11 C -0.06 -0.75 5.01 -29.04 -0.15 -0.90 16
12 C 0.52 8.17 7.63 -10.99 -0.08 8.09 16
13 O -0.53 -10.47 15.15 5.55 0.08 -10.39 16
14 N -0.61 -9.17 3.06 -163.01 -0.50 -9.67 16
15 C 0.10 1.21 6.62 -2.53 -0.02 1.19 16
16 C -0.15 -1.90 6.69 -24.58 -0.16 -2.06 16
17 C 0.18 3.03 3.54 -66.09 -0.23 2.80 16
18 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16
19 N -0.73 -15.69 3.64 -51.65 -0.19 -15.88 16
20 C -0.24 -6.36 8.97 -15.06 -0.14 -6.50 16
21 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16
22 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16
23 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16
24 Si 0.88 21.25 27.74 -169.99 -4.71 16.54 16
25 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16
26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
27 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16
28 C 0.11 1.92 3.43 -66.95 -0.23 1.69 16
29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
30 C -0.13 -2.71 8.05 37.16 0.30 -2.41 16
31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16
35 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
36 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16
37 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16
38 H 0.10 0.86 7.56 -51.93 -0.39 0.46 16
39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
40 H 0.07 0.61 7.48 -51.93 -0.39 0.23 16
41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
44 H 0.36 7.70 5.70 -40.82 -0.23 7.47 16
45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
46 H 0.04 0.87 7.02 -51.92 -0.36 0.50 16
47 H 0.07 1.64 7.25 -51.93 -0.38 1.26 16
48 H 0.06 1.24 7.55 -51.93 -0.39 0.85 16
LS Contribution 390.50 15.07 5.88 5.88
Total: -1.00 -34.08 390.50 -9.60 -43.68
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: -7.23 Total: 8.40 kcal
Atomic # 6 Polarization: -4.71 SS G_CDS: -3.75 Total: -8.47 kcal
Atomic # 7 Polarization: -53.12 SS G_CDS: 0.09 Total: -53.04 kcal
Atomic # 8 Polarization: -13.12 SS G_CDS: 0.13 Total: -13.00 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -34.08 -9.60 -43.68 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987630219.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.184 kcal
(2) G-P(sol) polarization free energy of solvation -34.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds