Wall clock time and date at job start Sat Apr 11 2020 06:36:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86795 * 120.00105 * 2 1
4 4 H 1.48502 * 109.47048 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.47316 * 299.99969 * 3 2 1
6 6 H 1.48505 * 109.47123 * 59.99693 * 3 2 1
7 7 C 1.38805 * 119.99273 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99650 * 180.02562 * 7 2 1
9 9 N 1.36940 * 120.00592 * 0.02562 * 7 2 1
10 10 C 1.47417 * 125.64429 * 359.97438 * 9 7 2
11 11 C 1.54914 * 104.83125 * 155.90358 * 10 9 7
12 12 C 1.55159 * 101.57811 * 37.00742 * 11 10 9
13 13 H 1.09006 * 110.72105 * 83.04212 * 12 11 10
14 14 C 1.53006 * 110.72077 * 206.13160 * 12 11 10
15 15 C 1.52993 * 109.47292 * 182.55920 * 14 12 11
16 16 N 1.46502 * 109.47223 * 179.97438 * 15 14 12
17 17 C 1.34774 * 120.00227 * 179.97438 * 16 15 14
18 18 O 1.21633 * 120.00013 * 354.89557 * 17 16 15
19 19 C 1.47161 * 119.99946 * 174.89244 * 17 16 15
20 20 C 1.38397 * 126.88533 * 5.12447 * 19 17 16
21 21 C 1.39678 * 105.35853 * 180.02562 * 20 19 17
22 22 N 1.30855 * 107.86337 * 359.97438 * 21 20 19
23 23 N 1.28450 * 110.92676 * 359.71489 * 22 21 20
24 24 C 1.46496 * 125.19087 * 180.27165 * 23 22 21
25 25 C 1.52999 * 109.47899 * 274.92916 * 24 23 22
26 26 F 1.39898 * 109.47572 * 175.00069 * 25 24 23
27 27 F 1.39897 * 109.46788 * 295.00311 * 25 24 23
28 28 C 1.47318 * 125.61584 * 180.19339 * 9 7 2
29 29 H 0.97004 * 119.99690 * 0.02562 * 1 2 3
30 30 H 1.09001 * 110.37055 * 37.06591 * 10 9 7
31 31 H 1.08998 * 110.45828 * 274.78582 * 10 9 7
32 32 H 1.08996 * 111.00576 * 278.93678 * 11 10 9
33 33 H 1.09006 * 111.03822 * 155.09148 * 11 10 9
34 34 H 1.09005 * 109.46589 * 62.55651 * 14 12 11
35 35 H 1.08996 * 109.47027 * 302.56636 * 14 12 11
36 36 H 1.09005 * 109.47066 * 60.00027 * 15 14 12
37 37 H 1.08996 * 109.47211 * 300.00596 * 15 14 12
38 38 H 0.97000 * 120.00001 * 0.02562 * 16 15 14
39 39 H 1.08007 * 127.32322 * 359.97438 * 20 19 17
40 40 H 1.08003 * 126.06771 * 179.97438 * 21 20 19
41 41 H 1.09000 * 109.47064 * 34.93201 * 24 23 22
42 42 H 1.09004 * 109.46933 * 154.92681 * 24 23 22
43 43 H 1.08998 * 109.46523 * 54.99699 * 25 24 23
44 44 H 1.08997 * 110.06154 * 61.68164 * 28 9 7
45 45 H 1.08999 * 109.85296 * 300.42749 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0101 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3254 -2.3881 0.0005
10 6 -0.1416 -2.5330 0.0005
11 6 -0.4018 -3.9325 -0.6109
12 6 0.7782 -4.7524 -0.0254
13 1 0.5444 -5.1003 0.9808
14 6 1.1229 -5.9317 -0.9372
15 6 2.2450 -6.7559 -0.3028
16 7 2.5746 -7.8854 -1.1756
17 6 3.5417 -8.7534 -0.8181
18 8 4.2038 -8.5485 0.1814
19 6 3.7965 -9.9493 -1.6371
20 6 3.2025 -10.2708 -2.8451
21 6 3.7687 -11.4906 -3.2226
22 7 4.6247 -11.8396 -2.2965
23 7 4.6712 -10.9613 -1.3603
24 6 5.5278 -11.0362 -0.1743
25 6 4.8329 -11.8683 0.9053
26 9 5.6963 -12.0355 1.9933
27 9 3.6732 -11.2094 1.3274
28 6 1.9336 -3.7299 0.0051
29 1 -0.4850 0.8401 -0.0004
30 1 -0.5994 -1.7589 -0.6154
31 1 -0.5291 -2.4857 1.0182
32 1 -0.3521 -3.8987 -1.6992
33 1 -1.3592 -4.3332 -0.2777
34 1 1.4507 -5.5574 -1.9071
35 1 0.2413 -6.5589 -1.0690
36 1 1.9172 -7.1302 0.6670
37 1 3.1266 -6.1286 -0.1710
38 1 2.0974 -8.0082 -2.0111
39 1 2.4587 -9.7002 -3.3815
40 1 3.5404 -12.0470 -4.1197
41 1 6.4758 -11.5042 -0.4397
42 1 5.7125 -10.0309 0.2045
43 1 4.5685 -12.8440 0.4978
44 1 2.5273 -3.8682 0.9087
45 1 2.5622 -3.8544 -0.8766
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317790813.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:43
Heat of formation + Delta-G solvation = -36.493525 kcal
Electronic energy + Delta-G solvation = -29455.065481 eV
Core-core repulsion = 24952.748312 eV
Total energy + Delta-G solvation = -4502.317169 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-49.42090 -47.42612 -43.00361 -39.64988 -37.81573 -35.52920 -34.46204 -33.13449
-31.70590 -30.50683 -29.45840 -28.95204 -26.70068 -24.96209 -24.32389 -23.43518
-22.44066 -21.62513 -20.56017 -20.10046 -19.44844 -18.58132 -17.92981 -17.80018
-17.14114 -16.89435 -16.37506 -15.91011 -15.72937 -15.33645 -14.87688 -14.78575
-14.54813 -14.32103 -14.24580 -13.85633 -13.77235 -13.64832 -13.60644 -13.19204
-12.76658 -12.54671 -12.29998 -11.97143 -11.76730 -11.71714 -11.58868 -11.31552
-11.10276 -10.90482 -10.77279 -10.41222 -10.14448 -10.00238 -9.92100 -9.75308
-9.74304 -9.56526 -9.46621 -9.22334 -8.63450 -6.80470 -5.63534 -3.04772
0.78896 1.68973 2.13348 2.83831 2.87738 3.22561 3.40595 3.46260
3.48728 3.64560 3.81108 4.19207 4.22673 4.28310 4.50710 4.64275
4.75838 4.88603 4.92460 5.05936 5.12912 5.24470 5.29247 5.48844
5.57232 5.60384 5.74555 5.84842 5.96237 6.00101 6.09972 6.13813
6.19620 6.28271 6.38471 6.60918 6.63677 6.77125 6.97867 7.14840
7.52741 7.54581 7.65464 7.84962 7.87791 8.38688 9.24648 9.85501
10.50808 11.40487
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.018393 B = 0.001992 C = 0.001933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1521.963586 B =14050.523652 C =14480.848788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.014 4.014
3 Si 0.914 3.086
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.220 4.220
8 H 0.077 0.923
9 N -0.606 5.606
10 C 0.151 3.849
11 C -0.138 4.138
12 C -0.098 4.098
13 H 0.072 0.928
14 C -0.117 4.117
15 C 0.119 3.881
16 N -0.709 5.709
17 C 0.586 3.414
18 O -0.533 6.533
19 C -0.022 4.022
20 C -0.185 4.185
21 C 0.009 3.991
22 N -0.281 5.281
23 N -0.266 5.266
24 C 0.065 3.935
25 C 0.258 3.742
26 F -0.192 7.192
27 F -0.191 7.191
28 C 0.139 3.861
29 H 0.251 0.749
30 H 0.105 0.895
31 H 0.010 0.990
32 H 0.060 0.940
33 H 0.057 0.943
34 H 0.071 0.929
35 H 0.067 0.933
36 H 0.071 0.929
37 H 0.077 0.923
38 H 0.403 0.597
39 H 0.166 0.834
40 H 0.191 0.809
41 H 0.130 0.870
42 H 0.146 0.854
43 H 0.116 0.884
44 H 0.020 0.980
45 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.470 -27.036 -5.945 28.217
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.209 4.209
3 Si 0.744 3.256
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.348 4.348
8 H 0.095 0.905
9 N -0.332 5.332
10 C 0.026 3.974
11 C -0.177 4.177
12 C -0.117 4.117
13 H 0.091 0.909
14 C -0.155 4.155
15 C -0.004 4.004
16 N -0.360 5.360
17 C 0.371 3.629
18 O -0.410 6.410
19 C -0.149 4.149
20 C -0.214 4.214
21 C -0.168 4.168
22 N -0.112 5.112
23 N -0.053 5.053
24 C -0.057 4.057
25 C 0.203 3.797
26 F -0.173 7.173
27 F -0.172 7.172
28 C 0.013 3.987
29 H 0.062 0.938
30 H 0.123 0.877
31 H 0.028 0.972
32 H 0.078 0.922
33 H 0.075 0.925
34 H 0.090 0.910
35 H 0.085 0.915
36 H 0.089 0.911
37 H 0.096 0.904
38 H 0.238 0.762
39 H 0.183 0.817
40 H 0.208 0.792
41 H 0.148 0.852
42 H 0.163 0.837
43 H 0.133 0.867
44 H 0.038 0.962
45 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges 6.756 -27.468 -4.729 28.679
hybrid contribution -0.342 1.355 -0.463 1.472
sum 6.415 -26.113 -5.192 27.386
Atomic orbital electron populations
1.69820 1.04875 1.24566 1.57965 1.24788 0.95742 0.97711 1.02642
0.86004 0.78671 0.83655 0.77230 1.20542 1.21767 1.21779 1.19142
0.90539 0.82551 1.42584 0.90505 1.44603 1.01986 0.99800 1.86802
1.21915 0.84670 0.92654 0.98143 1.23039 0.95834 0.98844 0.99970
1.22096 0.97591 0.93711 0.98325 0.90911 1.21804 0.97071 0.96733
0.99878 1.21615 0.99284 0.86209 0.93277 1.45732 1.37577 1.27643
1.25083 1.16871 0.80713 0.81403 0.83940 1.90799 1.47921 1.75621
1.26654 1.21542 0.99388 0.94812 0.99198 1.22342 1.04296 0.99092
0.95678 1.23655 0.96788 0.96735 0.99605 1.73225 1.22204 1.16531
0.99250 1.45231 1.29378 1.14069 1.16623 1.23227 0.93586 1.07102
0.81766 1.22032 0.77277 0.97104 0.83273 1.93030 1.70584 1.96330
1.57347 1.93075 1.49696 1.83225 1.91184 1.21425 0.93655 0.85923
0.97702 0.93846 0.87688 0.97162 0.92175 0.92464 0.91006 0.91457
0.91052 0.90448 0.76216 0.81692 0.79185 0.85218 0.83655 0.86655
0.96199 0.95895
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.08 10.09 55.49 0.56 -26.52 16
2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16
3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16
4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
7 C -0.22 -6.19 10.28 -15.06 -0.15 -6.35 16
8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16
9 N -0.61 -15.61 3.40 -169.84 -0.58 -16.19 16
10 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16
11 C -0.14 -2.50 6.54 -24.58 -0.16 -2.66 16
12 C -0.10 -1.59 2.95 -88.79 -0.26 -1.85 16
13 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16
14 C -0.12 -1.39 4.72 -26.73 -0.13 -1.52 16
15 C 0.12 1.41 5.55 -4.04 -0.02 1.39 16
16 N -0.71 -7.10 5.54 -61.47 -0.34 -7.45 16
17 C 0.59 6.93 7.79 -12.64 -0.10 6.84 16
18 O -0.53 -7.90 14.38 5.25 0.08 -7.82 16
19 C -0.02 -0.22 6.96 -82.06 -0.57 -0.79 16
20 C -0.19 -1.36 10.50 -38.99 -0.41 -1.77 16
21 C 0.01 0.07 12.03 -17.43 -0.21 -0.14 16
22 N -0.28 -2.55 11.90 30.59 0.36 -2.19 16
23 N -0.27 -2.54 3.33 -57.14 -0.19 -2.73 16
24 C 0.07 0.53 6.17 -4.04 -0.02 0.51 16
25 C 0.26 2.16 5.55 37.16 0.21 2.37 16
26 F -0.19 -1.77 17.34 2.25 0.04 -1.73 16
27 F -0.19 -2.25 17.11 2.25 0.04 -2.22 16
28 C 0.14 2.85 6.13 -2.91 -0.02 2.83 16
29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
30 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16
31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16
33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16
35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16
38 H 0.40 2.85 7.50 -40.82 -0.31 2.54 16
39 H 0.17 0.71 7.58 -52.48 -0.40 0.31 16
40 H 0.19 0.72 8.06 -52.48 -0.42 0.29 16
41 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16
42 H 0.15 1.42 5.97 -51.93 -0.31 1.11 16
43 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
45 H 0.02 0.47 7.73 -51.93 -0.40 0.06 16
LS Contribution 378.12 15.07 5.70 5.70
Total: -1.00 -34.50 378.12 -7.62 -42.11
By element:
Atomic # 1 Polarization: 6.08 SS G_CDS: -6.30 Total: -0.22 kcal
Atomic # 6 Polarization: 3.98 SS G_CDS: -1.96 Total: 2.02 kcal
Atomic # 7 Polarization: -54.89 SS G_CDS: -0.19 Total: -55.07 kcal
Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal
Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal
Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.50 -7.62 -42.11 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317790813.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.620 kcal
(2) G-P(sol) polarization free energy of solvation -34.496 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.876 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds