Wall clock time and date at job start Sat Apr 11 2020 06:36:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86795 * 120.00105 * 2 1
4 4 H 1.48502 * 109.47048 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.47316 * 299.99969 * 3 2 1
6 6 H 1.48505 * 109.47123 * 59.99693 * 3 2 1
7 7 C 1.38805 * 119.99273 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99650 * 180.02562 * 7 2 1
9 9 N 1.36940 * 120.00592 * 0.02562 * 7 2 1
10 10 C 1.47417 * 125.64429 * 359.97438 * 9 7 2
11 11 C 1.54914 * 104.83125 * 155.90358 * 10 9 7
12 12 C 1.55159 * 101.57811 * 37.00742 * 11 10 9
13 13 H 1.09006 * 110.72105 * 83.04212 * 12 11 10
14 14 C 1.53006 * 110.72077 * 206.13160 * 12 11 10
15 15 C 1.52993 * 109.47292 * 182.55920 * 14 12 11
16 16 N 1.46502 * 109.47223 * 179.97438 * 15 14 12
17 17 C 1.34774 * 120.00227 * 179.97438 * 16 15 14
18 18 O 1.21633 * 120.00013 * 354.89557 * 17 16 15
19 19 C 1.47161 * 119.99946 * 174.89244 * 17 16 15
20 20 C 1.38397 * 126.88533 * 5.12447 * 19 17 16
21 21 C 1.39678 * 105.35853 * 180.02562 * 20 19 17
22 22 N 1.30855 * 107.86337 * 359.97438 * 21 20 19
23 23 N 1.28450 * 110.92676 * 359.71489 * 22 21 20
24 24 C 1.46496 * 125.19087 * 180.27165 * 23 22 21
25 25 C 1.52999 * 109.47899 * 274.92916 * 24 23 22
26 26 F 1.39898 * 109.47572 * 175.00069 * 25 24 23
27 27 F 1.39897 * 109.46788 * 295.00311 * 25 24 23
28 28 C 1.47318 * 125.61584 * 180.19339 * 9 7 2
29 29 H 0.97004 * 119.99690 * 0.02562 * 1 2 3
30 30 H 1.09001 * 110.37055 * 37.06591 * 10 9 7
31 31 H 1.08998 * 110.45828 * 274.78582 * 10 9 7
32 32 H 1.08996 * 111.00576 * 278.93678 * 11 10 9
33 33 H 1.09006 * 111.03822 * 155.09148 * 11 10 9
34 34 H 1.09005 * 109.46589 * 62.55651 * 14 12 11
35 35 H 1.08996 * 109.47027 * 302.56636 * 14 12 11
36 36 H 1.09005 * 109.47066 * 60.00027 * 15 14 12
37 37 H 1.08996 * 109.47211 * 300.00596 * 15 14 12
38 38 H 0.97000 * 120.00001 * 0.02562 * 16 15 14
39 39 H 1.08007 * 127.32322 * 359.97438 * 20 19 17
40 40 H 1.08003 * 126.06771 * 179.97438 * 21 20 19
41 41 H 1.09000 * 109.47064 * 34.93201 * 24 23 22
42 42 H 1.09004 * 109.46933 * 154.92681 * 24 23 22
43 43 H 1.08998 * 109.46523 * 54.99699 * 25 24 23
44 44 H 1.08997 * 110.06154 * 61.68164 * 28 9 7
45 45 H 1.08999 * 109.85296 * 300.42749 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0101 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3254 -2.3881 0.0005
10 6 -0.1416 -2.5330 0.0005
11 6 -0.4018 -3.9325 -0.6109
12 6 0.7782 -4.7524 -0.0254
13 1 0.5444 -5.1003 0.9808
14 6 1.1229 -5.9317 -0.9372
15 6 2.2450 -6.7559 -0.3028
16 7 2.5746 -7.8854 -1.1756
17 6 3.5417 -8.7534 -0.8181
18 8 4.2038 -8.5485 0.1814
19 6 3.7965 -9.9493 -1.6371
20 6 3.2025 -10.2708 -2.8451
21 6 3.7687 -11.4906 -3.2226
22 7 4.6247 -11.8396 -2.2965
23 7 4.6712 -10.9613 -1.3603
24 6 5.5278 -11.0362 -0.1743
25 6 4.8329 -11.8683 0.9053
26 9 5.6963 -12.0355 1.9933
27 9 3.6732 -11.2094 1.3274
28 6 1.9336 -3.7299 0.0051
29 1 -0.4850 0.8401 -0.0004
30 1 -0.5994 -1.7589 -0.6154
31 1 -0.5291 -2.4857 1.0182
32 1 -0.3521 -3.8987 -1.6992
33 1 -1.3592 -4.3332 -0.2777
34 1 1.4507 -5.5574 -1.9071
35 1 0.2413 -6.5589 -1.0690
36 1 1.9172 -7.1302 0.6670
37 1 3.1266 -6.1286 -0.1710
38 1 2.0974 -8.0082 -2.0111
39 1 2.4587 -9.7002 -3.3815
40 1 3.5404 -12.0470 -4.1197
41 1 6.4758 -11.5042 -0.4397
42 1 5.7125 -10.0309 0.2045
43 1 4.5685 -12.8440 0.4978
44 1 2.5273 -3.8682 0.9087
45 1 2.5622 -3.8544 -0.8766
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001317790813.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:42
Heat of formation + Delta-G solvation = -59.552269 kcal
Electronic energy + Delta-G solvation = -29456.065383 eV
Core-core repulsion = 24952.748312 eV
Total energy + Delta-G solvation = -4503.317071 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-50.14867 -48.17824 -43.61144 -40.56382 -39.35403 -36.61487 -35.22683 -34.68806
-32.87178 -31.76472 -30.57043 -30.05703 -28.17782 -26.64592 -25.08865 -24.39776
-23.42898 -22.40942 -21.85623 -21.40729 -20.68573 -19.37545 -18.88312 -18.62290
-18.49259 -17.85847 -17.22651 -17.05853 -16.63455 -16.61560 -16.20827 -15.81594
-15.62201 -15.35357 -15.08492 -14.91678 -14.74535 -14.53936 -14.46023 -14.25735
-13.91861 -13.76924 -13.52765 -13.37830 -13.32286 -13.09824 -12.81861 -12.70663
-12.39846 -12.22353 -11.97263 -11.92228 -11.77318 -11.58075 -11.42478 -11.27107
-11.09655 -10.74491 -10.45653 -10.19508 -10.02829 -8.86972 -7.77471 -5.21472
0.09881 1.07518 1.45374 1.46346 1.56790 1.57498 2.03806 2.10869
2.49284 2.59928 3.05022 3.22107 3.31556 3.48629 3.59934 3.71344
3.74850 3.77070 3.95848 4.07708 4.18187 4.20004 4.31668 4.34716
4.37150 4.56530 4.65133 4.73449 4.76012 4.84394 4.90669 5.04213
5.13114 5.19724 5.28156 5.34339 5.42794 5.44977 5.53599 5.60055
5.71065 5.84938 6.33307 6.38050 6.93122 7.06110 7.12319 7.80228
8.43829 9.24353
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.018393 B = 0.001992 C = 0.001933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1521.963586 B =14050.523652 C =14480.848788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C -0.069 4.069
3 Si 0.979 3.021
4 H -0.269 1.269
5 H -0.288 1.288
6 H -0.293 1.293
7 C -0.238 4.238
8 H 0.076 0.924
9 N -0.630 5.630
10 C 0.148 3.852
11 C -0.121 4.121
12 C -0.084 4.084
13 H 0.078 0.922
14 C -0.100 4.100
15 C 0.126 3.874
16 N -0.696 5.696
17 C 0.582 3.418
18 O -0.573 6.573
19 C -0.052 4.052
20 C -0.167 4.167
21 C 0.009 3.991
22 N -0.294 5.294
23 N -0.275 5.275
24 C 0.066 3.934
25 C 0.256 3.744
26 F -0.199 7.199
27 F -0.213 7.213
28 C 0.133 3.867
29 H 0.247 0.753
30 H 0.071 0.929
31 H -0.019 1.019
32 H 0.070 0.930
33 H 0.086 0.914
34 H 0.078 0.922
35 H 0.101 0.899
36 H 0.065 0.935
37 H 0.053 0.947
38 H 0.420 0.580
39 H 0.198 0.802
40 H 0.225 0.775
41 H 0.155 0.845
42 H 0.125 0.875
43 H 0.143 0.857
44 H 0.011 0.989
45 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.252 -29.176 -8.025 30.712
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.599 5.599
2 C -0.262 4.262
3 Si 0.808 3.192
4 H -0.193 1.193
5 H -0.215 1.215
6 H -0.220 1.220
7 C -0.367 4.367
8 H 0.094 0.906
9 N -0.356 5.356
10 C 0.023 3.977
11 C -0.159 4.159
12 C -0.104 4.104
13 H 0.096 0.904
14 C -0.138 4.138
15 C 0.002 3.998
16 N -0.348 5.348
17 C 0.368 3.632
18 O -0.453 6.453
19 C -0.179 4.179
20 C -0.196 4.196
21 C -0.167 4.167
22 N -0.125 5.125
23 N -0.063 5.063
24 C -0.056 4.056
25 C 0.202 3.798
26 F -0.180 7.180
27 F -0.194 7.194
28 C 0.008 3.992
29 H 0.057 0.943
30 H 0.089 0.911
31 H -0.001 1.001
32 H 0.088 0.912
33 H 0.104 0.896
34 H 0.097 0.903
35 H 0.119 0.881
36 H 0.083 0.917
37 H 0.072 0.928
38 H 0.258 0.742
39 H 0.215 0.785
40 H 0.241 0.759
41 H 0.172 0.828
42 H 0.143 0.857
43 H 0.160 0.840
44 H 0.029 0.971
45 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 6.533 -29.640 -6.839 31.112
hybrid contribution -0.251 1.984 0.168 2.007
sum 6.282 -27.656 -6.671 29.134
Atomic orbital electron populations
1.70077 1.06134 1.24889 1.58806 1.25629 0.96693 1.00940 1.02889
0.84994 0.77998 0.79407 0.76845 1.19342 1.21474 1.21987 1.19488
0.90914 0.84086 1.42257 0.90576 1.44957 1.02953 1.01019 1.86687
1.21761 0.83880 0.95712 0.96314 1.22874 0.97896 0.94961 1.00188
1.22010 0.94747 0.93881 0.99760 0.90400 1.21641 0.98286 0.95184
0.98674 1.21367 0.98344 0.86481 0.93558 1.45515 1.37244 1.26634
1.25406 1.17198 0.80345 0.81984 0.83626 1.90783 1.49403 1.76602
1.28488 1.21507 1.01161 0.94839 1.00391 1.22807 1.03589 0.98939
0.94243 1.24316 0.95678 0.96749 1.00006 1.73227 1.22962 1.16701
0.99630 1.45320 1.29733 1.14254 1.16983 1.23203 0.94563 1.06154
0.81682 1.22349 0.76413 0.98115 0.82931 1.93010 1.70759 1.96373
1.57854 1.93024 1.51074 1.83861 1.91468 1.21638 0.95307 0.84963
0.97308 0.94349 0.91101 1.00075 0.91175 0.89570 0.90334 0.88077
0.91697 0.92815 0.74205 0.78517 0.75866 0.82771 0.85739 0.83981
0.97120 0.95345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.33 10.09 21.65 0.22 -57.11 16
2 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16
3 Si 0.98 46.49 29.55 68.60 2.03 48.51 16
4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16
6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16
7 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16
8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16
9 N -0.63 -33.09 3.40 -691.26 -2.35 -35.44 16
10 C 0.15 7.32 5.89 86.86 0.51 7.83 16
11 C -0.12 -4.13 6.54 31.99 0.21 -3.92 16
12 C -0.08 -2.58 2.95 -9.61 -0.03 -2.61 16
13 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16
14 C -0.10 -2.05 4.72 30.59 0.14 -1.91 16
15 C 0.13 2.80 5.55 86.38 0.48 3.28 16
16 N -0.70 -12.49 5.54 -466.64 -2.59 -15.08 16
17 C 0.58 13.31 7.79 86.59 0.67 13.99 16
18 O -0.57 -17.38 14.38 -4.13 -0.06 -17.44 16
19 C -0.05 -0.95 6.96 40.78 0.28 -0.67 16
20 C -0.17 -1.88 10.50 22.66 0.24 -1.65 16
21 C 0.01 0.10 12.03 85.19 1.02 1.13 16
22 N -0.29 -4.66 11.90 -57.14 -0.68 -5.34 16
23 N -0.28 -4.90 3.33 -334.70 -1.12 -6.02 16
24 C 0.07 1.06 6.17 86.38 0.53 1.59 16
25 C 0.26 4.19 5.55 71.98 0.40 4.59 16
26 F -0.20 -3.65 17.34 44.97 0.78 -2.87 16
27 F -0.21 -5.09 17.11 44.97 0.77 -4.32 16
28 C 0.13 5.44 6.13 86.67 0.53 5.97 16
29 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16
30 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16
31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16
32 H 0.07 2.28 8.05 -2.39 -0.02 2.26 16
33 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16
34 H 0.08 1.58 8.01 -2.38 -0.02 1.56 16
35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16
37 H 0.05 1.46 7.58 -2.39 -0.02 1.45 16
38 H 0.42 4.45 7.50 -92.71 -0.70 3.75 16
39 H 0.20 0.75 7.58 -2.91 -0.02 0.72 16
40 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16
41 H 0.15 1.53 8.14 -2.39 -0.02 1.52 16
42 H 0.12 2.56 5.97 -2.38 -0.01 2.54 16
43 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16
44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
45 H 0.03 1.14 7.73 -2.39 -0.02 1.12 16
Total: -1.00 -78.79 378.12 3.66 -75.13
By element:
Atomic # 1 Polarization: 8.43 SS G_CDS: 0.33 Total: 8.76 kcal
Atomic # 6 Polarization: 4.89 SS G_CDS: 6.33 Total: 11.22 kcal
Atomic # 7 Polarization: -112.47 SS G_CDS: -6.52 Total: -118.99 kcal
Atomic # 8 Polarization: -17.38 SS G_CDS: -0.06 Total: -17.44 kcal
Atomic # 9 Polarization: -8.74 SS G_CDS: 1.55 Total: -7.19 kcal
Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal
Total: -78.79 3.66 -75.13 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317790813.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.580 kcal
(2) G-P(sol) polarization free energy of solvation -78.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds