Wall clock time and date at job start Sat Apr 11 2020 06:39:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86803 * 120.00019 * 2 1
4 4 H 1.48502 * 109.47214 * 89.99464 * 3 2 1
5 5 H 1.48502 * 109.46948 * 209.99696 * 3 2 1
6 6 H 1.48500 * 109.46751 * 329.99426 * 3 2 1
7 7 C 1.38809 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99818 * 0.02562 * 7 2 1
9 9 N 1.36929 * 120.00311 * 180.02562 * 7 2 1
10 10 C 1.46502 * 120.00409 * 179.97438 * 9 7 2
11 11 C 1.52994 * 109.47130 * 180.02562 * 10 9 7
12 12 H 1.08999 * 109.50077 * 304.93962 * 11 10 9
13 13 C 1.53039 * 109.49654 * 184.83909 * 11 10 9
14 14 C 1.53042 * 109.53896 * 178.68491 * 13 11 10
15 15 C 1.53198 * 109.31490 * 61.36444 * 14 13 11
16 16 N 1.46930 * 108.77399 * 305.36579 * 15 14 13
17 17 C 1.34770 * 120.62878 * 233.58715 * 16 15 14
18 18 O 1.21573 * 119.99627 * 173.05052 * 17 16 15
19 19 C 1.47707 * 120.00519 * 353.04798 * 17 16 15
20 20 C 1.41497 * 126.52198 * 172.92465 * 19 17 16
21 21 C 1.35367 * 105.50407 * 179.84318 * 20 19 17
22 22 N 1.35038 * 107.22655 * 0.41758 * 21 20 19
23 23 C 1.46501 * 124.88126 * 179.72654 * 22 21 20
24 24 C 1.53001 * 109.47037 * 124.97261 * 23 22 21
25 25 F 1.39899 * 109.46961 * 174.99464 * 24 23 22
26 26 F 1.39892 * 109.47150 * 294.99875 * 24 23 22
27 27 N 1.28459 * 110.22953 * 359.72138 * 22 21 20
28 28 C 1.46929 * 118.73581 * 53.60836 * 16 15 14
29 29 H 0.97002 * 119.99318 * 0.02562 * 1 2 3
30 30 H 0.97003 * 120.00045 * 0.02562 * 9 7 2
31 31 H 1.08997 * 109.46797 * 300.00320 * 10 9 7
32 32 H 1.08999 * 109.47144 * 60.00071 * 10 9 7
33 33 H 1.09008 * 109.46118 * 298.69963 * 13 11 10
34 34 H 1.08991 * 109.46318 * 58.66502 * 13 11 10
35 35 H 1.09000 * 109.49537 * 301.41202 * 14 13 11
36 36 H 1.08999 * 109.52778 * 181.33219 * 14 13 11
37 37 H 1.09000 * 109.58508 * 185.58049 * 15 14 13
38 38 H 1.09000 * 109.70122 * 65.22176 * 15 14 13
39 39 H 1.08004 * 127.24780 * 0.02562 * 20 19 17
40 40 H 1.07998 * 126.38966 * 180.14026 * 21 20 19
41 41 H 1.09007 * 109.46648 * 244.96676 * 23 22 21
42 42 H 1.08993 * 109.47230 * 4.97253 * 23 22 21
43 43 H 1.09003 * 109.47322 * 54.99771 * 24 23 22
44 44 H 1.09007 * 109.58365 * 186.60467 * 28 16 15
45 45 H 1.08992 * 109.70367 * 66.25115 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 2.4977 2.0465 1.4001
5 1 3.5479 1.4401 -0.7000
6 1 1.4477 2.6526 -0.7002
7 6 2.0103 -1.2021 0.0005
8 1 1.4703 -2.1374 0.0005
9 7 3.3796 -1.2022 0.0011
10 6 4.1121 -2.4709 0.0022
11 6 5.6163 -2.1914 0.0032
12 1 5.8672 -1.5467 -0.8391
13 6 6.3813 -3.5114 -0.1173
14 6 7.8853 -3.2303 -0.1493
15 6 8.3013 -2.5480 1.1578
16 7 7.4682 -1.3537 1.3537
17 6 8.0340 -0.1494 1.5680
18 8 7.3422 0.8497 1.6026
19 6 9.4946 -0.0434 1.7607
20 6 10.2471 1.1512 1.8547
21 6 11.5304 0.7577 2.0299
22 7 11.5382 -0.5927 2.0297
23 6 12.7345 -1.4236 2.1869
24 6 12.5314 -2.3948 3.3515
25 9 13.6248 -3.2640 3.4298
26 9 12.4217 -1.6745 4.5457
27 7 10.3458 -1.0437 1.8721
28 6 6.0065 -1.4974 1.3121
29 1 -0.4849 0.8401 -0.0004
30 1 3.8647 -0.3622 0.0014
31 1 3.8484 -3.0419 0.8924
32 1 3.8492 -3.0431 -0.8875
33 1 6.1486 -4.1454 0.7384
34 1 6.0871 -4.0190 -1.0358
35 1 8.1153 -2.5761 -0.9904
36 1 8.4291 -4.1686 -0.2589
37 1 9.3500 -2.2566 1.1001
38 1 8.1580 -3.2344 1.9923
39 1 9.8754 2.1639 1.8012
40 1 12.3887 1.4033 2.1436
41 1 12.9084 -1.9870 1.2700
42 1 13.5951 -0.7866 2.3908
43 1 11.6203 -2.9709 3.1897
44 1 5.5412 -0.5126 1.3563
45 1 5.6721 -2.0979 2.1579
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001480288543.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:10
Heat of formation + Delta-G solvation = -30.008528 kcal
Electronic energy + Delta-G solvation = -30257.019501 eV
Core-core repulsion = 25754.983542 eV
Total energy + Delta-G solvation = -4502.035958 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-49.69569 -47.69808 -43.14389 -39.95720 -37.61023 -35.12273 -34.66490 -32.94930
-31.73563 -31.24539 -30.26097 -29.59362 -26.28487 -25.64927 -24.41352 -22.89811
-22.51448 -21.93155 -21.13403 -20.27183 -19.36808 -18.43059 -18.25529 -17.72991
-17.59455 -17.08609 -16.58051 -16.08170 -15.61612 -15.12020 -14.65574 -14.63979
-14.57740 -14.33905 -14.21696 -14.04085 -13.93401 -13.58532 -13.47003 -13.28338
-13.17108 -13.05498 -12.81413 -12.57508 -12.36318 -11.99489 -11.78234 -11.46574
-11.18964 -10.93732 -10.75865 -10.58364 -10.36753 -10.23037 -10.05559 -9.91292
-9.63783 -9.50838 -9.48914 -8.82105 -8.54132 -7.15282 -5.69361 -3.04674
1.14965 1.64258 1.79344 2.77996 2.98438 3.28137 3.48421 3.49772
3.54967 3.58128 3.58903 3.91546 4.07606 4.29975 4.37892 4.51396
4.69182 4.71791 4.83442 4.94208 5.00117 5.15191 5.25937 5.33352
5.34982 5.56611 5.60849 5.62299 5.72052 5.82534 5.90283 5.94074
6.04969 6.08325 6.09154 6.24040 6.35433 6.38696 6.62932 6.72034
6.81710 7.30584 7.49659 8.06486 8.16664 8.49750 9.29091 10.02040
10.21509 11.48878
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.018475 B = 0.002633 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1515.205054 B =10633.657931 C =11631.572334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.005 3.995
3 Si 0.881 3.119
4 H -0.282 1.282
5 H -0.276 1.276
6 H -0.291 1.291
7 C -0.244 4.244
8 H 0.090 0.910
9 N -0.757 5.757
10 C 0.165 3.835
11 C -0.111 4.111
12 H 0.074 0.926
13 C -0.112 4.112
14 C -0.132 4.132
15 C 0.087 3.913
16 N -0.597 5.597
17 C 0.596 3.404
18 O -0.525 6.525
19 C 0.010 3.990
20 C -0.174 4.174
21 C -0.004 4.004
22 N -0.295 5.295
23 C 0.076 3.924
24 C 0.254 3.746
25 F -0.193 7.193
26 F -0.196 7.196
27 N -0.268 5.268
28 C 0.119 3.881
29 H 0.259 0.741
30 H 0.362 0.638
31 H 0.029 0.971
32 H 0.030 0.970
33 H 0.065 0.935
34 H 0.067 0.933
35 H 0.063 0.937
36 H 0.072 0.928
37 H 0.120 0.880
38 H 0.065 0.935
39 H 0.167 0.833
40 H 0.185 0.815
41 H 0.127 0.873
42 H 0.128 0.872
43 H 0.127 0.873
44 H 0.097 0.903
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 33.966 -6.256 4.246 34.798
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.191 4.191
3 Si 0.712 3.288
4 H -0.208 1.208
5 H -0.202 1.202
6 H -0.218 1.218
7 C -0.373 4.373
8 H 0.108 0.892
9 N -0.403 5.403
10 C 0.037 3.963
11 C -0.131 4.131
12 H 0.092 0.908
13 C -0.150 4.150
14 C -0.171 4.171
15 C -0.036 4.036
16 N -0.330 5.330
17 C 0.381 3.619
18 O -0.399 6.399
19 C -0.150 4.150
20 C -0.201 4.201
21 C -0.146 4.146
22 N -0.083 5.083
23 C -0.046 4.046
24 C 0.200 3.800
25 F -0.174 7.174
26 F -0.177 7.177
27 N -0.103 5.103
28 C -0.003 4.003
29 H 0.069 0.931
30 H 0.195 0.805
31 H 0.047 0.953
32 H 0.048 0.952
33 H 0.084 0.916
34 H 0.086 0.914
35 H 0.082 0.918
36 H 0.090 0.910
37 H 0.137 0.863
38 H 0.083 0.917
39 H 0.185 0.815
40 H 0.202 0.798
41 H 0.144 0.856
42 H 0.146 0.854
43 H 0.145 0.855
44 H 0.115 0.885
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 33.546 -7.020 4.330 34.545
hybrid contribution 0.687 1.983 0.059 2.099
sum 34.233 -5.037 4.389 34.879
Atomic orbital electron populations
1.69714 1.05108 1.25790 1.57736 1.24657 0.95226 0.97222 1.01963
0.86588 0.79235 0.84872 0.78151 1.20834 1.20159 1.21782 1.19040
0.80641 0.94681 1.42979 0.89236 1.42781 1.04108 1.02284 1.91136
1.20613 0.87371 0.89420 0.98849 1.21740 0.96868 0.96740 0.97705
0.90791 1.21521 0.93956 0.97096 1.02460 1.21914 0.96974 1.00438
0.97735 1.22415 0.97372 0.86649 0.97207 1.47980 1.07741 1.07333
1.69899 1.17006 0.84288 0.83413 0.77198 1.90851 1.62089 1.35727
1.51203 1.22101 0.94229 0.90740 1.07967 1.21858 0.91275 0.99933
1.07065 1.22897 1.00306 0.84059 1.07348 1.45241 1.05595 1.05485
1.51938 1.22947 0.85680 0.95388 1.00592 1.22085 0.89779 0.86277
0.81881 1.93040 1.57643 1.70271 1.96478 1.93052 1.96516 1.79004
1.49126 1.73336 0.90101 1.26445 1.20424 1.21782 0.77595 1.03226
0.97694 0.93125 0.80459 0.95340 0.95194 0.91586 0.91418 0.91809
0.90955 0.86297 0.91714 0.81526 0.79770 0.85551 0.85436 0.85526
0.88479 0.90936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -30.28 13.97 55.49 0.78 -29.51 16
2 C 0.00 0.15 5.50 -17.43 -0.10 0.06 16
3 Si 0.88 23.58 27.73 -169.99 -4.71 18.86 16
4 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16
5 H -0.28 -7.12 6.52 56.52 0.37 -6.75 16
6 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16
7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16
8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16
9 N -0.76 -18.76 5.18 -59.91 -0.31 -19.07 16
10 C 0.17 3.23 5.65 -4.04 -0.02 3.21 16
11 C -0.11 -1.76 2.38 -90.50 -0.22 -1.97 16
12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
13 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16
14 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16
15 C 0.09 0.93 6.11 -3.71 -0.02 0.91 16
16 N -0.60 -8.59 2.97 -173.92 -0.52 -9.11 16
17 C 0.60 9.45 7.69 -12.39 -0.10 9.36 16
18 O -0.52 -10.38 16.36 5.30 0.09 -10.29 16
19 C 0.01 0.13 6.83 -82.77 -0.56 -0.44 16
20 C -0.17 -1.77 10.81 -39.36 -0.43 -2.19 16
21 C 0.00 -0.03 11.40 -17.16 -0.20 -0.22 16
22 N -0.30 -1.99 3.39 -61.33 -0.21 -2.20 16
23 C 0.08 0.22 6.59 -4.04 -0.03 0.19 16
24 C 0.25 1.18 5.37 37.16 0.20 1.38 16
25 F -0.19 -1.05 17.34 2.25 0.04 -1.01 16
26 F -0.20 -1.51 17.32 2.25 0.04 -1.47 16
27 N -0.27 -2.57 8.06 33.42 0.27 -2.30 16
28 C 0.12 1.95 5.53 -3.71 -0.02 1.92 16
29 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16
30 H 0.36 9.03 4.75 -40.82 -0.19 8.84 16
31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16
34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16
37 H 0.12 1.17 4.17 -69.81 -0.29 0.87 16
38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16
40 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16
41 H 0.13 0.11 8.14 -51.92 -0.42 -0.31 16
42 H 0.13 0.06 8.04 -51.93 -0.42 -0.36 16
43 H 0.13 0.51 7.96 -51.93 -0.41 0.10 16
44 H 0.10 1.92 6.20 -51.92 -0.32 1.60 16
45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 373.66 15.07 5.63 5.63
Total: -1.00 -37.52 373.66 -7.16 -44.67
By element:
Atomic # 1 Polarization: 10.15 SS G_CDS: -6.30 Total: 3.85 kcal
Atomic # 6 Polarization: 3.89 SS G_CDS: -1.94 Total: 1.94 kcal
Atomic # 7 Polarization: -62.19 SS G_CDS: 0.01 Total: -62.18 kcal
Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal
Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.48 kcal
Atomic # 14 Polarization: 23.58 SS G_CDS: -4.71 Total: 18.86 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -37.52 -7.16 -44.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480288543.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.665 kcal
(2) G-P(sol) polarization free energy of solvation -37.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds