Wall clock time and date at job start Sat Apr 11 2020 06:39:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86803 * 120.00019 * 2 1
4 4 H 1.48502 * 109.47214 * 89.99464 * 3 2 1
5 5 H 1.48502 * 109.46948 * 209.99696 * 3 2 1
6 6 H 1.48500 * 109.46751 * 329.99426 * 3 2 1
7 7 C 1.38809 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99818 * 0.02562 * 7 2 1
9 9 N 1.36929 * 120.00311 * 180.02562 * 7 2 1
10 10 C 1.46502 * 120.00409 * 179.97438 * 9 7 2
11 11 C 1.52994 * 109.47130 * 180.02562 * 10 9 7
12 12 H 1.08999 * 109.50077 * 304.93962 * 11 10 9
13 13 C 1.53039 * 109.49654 * 184.83909 * 11 10 9
14 14 C 1.53042 * 109.53896 * 178.68491 * 13 11 10
15 15 C 1.53198 * 109.31490 * 61.36444 * 14 13 11
16 16 N 1.46930 * 108.77399 * 305.36579 * 15 14 13
17 17 C 1.34770 * 120.62878 * 233.58715 * 16 15 14
18 18 O 1.21573 * 119.99627 * 173.05052 * 17 16 15
19 19 C 1.47707 * 120.00519 * 353.04798 * 17 16 15
20 20 C 1.41497 * 126.52198 * 172.92465 * 19 17 16
21 21 C 1.35367 * 105.50407 * 179.84318 * 20 19 17
22 22 N 1.35038 * 107.22655 * 0.41758 * 21 20 19
23 23 C 1.46501 * 124.88126 * 179.72654 * 22 21 20
24 24 C 1.53001 * 109.47037 * 124.97261 * 23 22 21
25 25 F 1.39899 * 109.46961 * 174.99464 * 24 23 22
26 26 F 1.39892 * 109.47150 * 294.99875 * 24 23 22
27 27 N 1.28459 * 110.22953 * 359.72138 * 22 21 20
28 28 C 1.46929 * 118.73581 * 53.60836 * 16 15 14
29 29 H 0.97002 * 119.99318 * 0.02562 * 1 2 3
30 30 H 0.97003 * 120.00045 * 0.02562 * 9 7 2
31 31 H 1.08997 * 109.46797 * 300.00320 * 10 9 7
32 32 H 1.08999 * 109.47144 * 60.00071 * 10 9 7
33 33 H 1.09008 * 109.46118 * 298.69963 * 13 11 10
34 34 H 1.08991 * 109.46318 * 58.66502 * 13 11 10
35 35 H 1.09000 * 109.49537 * 301.41202 * 14 13 11
36 36 H 1.08999 * 109.52778 * 181.33219 * 14 13 11
37 37 H 1.09000 * 109.58508 * 185.58049 * 15 14 13
38 38 H 1.09000 * 109.70122 * 65.22176 * 15 14 13
39 39 H 1.08004 * 127.24780 * 0.02562 * 20 19 17
40 40 H 1.07998 * 126.38966 * 180.14026 * 21 20 19
41 41 H 1.09007 * 109.46648 * 244.96676 * 23 22 21
42 42 H 1.08993 * 109.47230 * 4.97253 * 23 22 21
43 43 H 1.09003 * 109.47322 * 54.99771 * 24 23 22
44 44 H 1.09007 * 109.58365 * 186.60467 * 28 16 15
45 45 H 1.08992 * 109.70367 * 66.25115 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 2.4977 2.0465 1.4001
5 1 3.5479 1.4401 -0.7000
6 1 1.4477 2.6526 -0.7002
7 6 2.0103 -1.2021 0.0005
8 1 1.4703 -2.1374 0.0005
9 7 3.3796 -1.2022 0.0011
10 6 4.1121 -2.4709 0.0022
11 6 5.6163 -2.1914 0.0032
12 1 5.8672 -1.5467 -0.8391
13 6 6.3813 -3.5114 -0.1173
14 6 7.8853 -3.2303 -0.1493
15 6 8.3013 -2.5480 1.1578
16 7 7.4682 -1.3537 1.3537
17 6 8.0340 -0.1494 1.5680
18 8 7.3422 0.8497 1.6026
19 6 9.4946 -0.0434 1.7607
20 6 10.2471 1.1512 1.8547
21 6 11.5304 0.7577 2.0299
22 7 11.5382 -0.5927 2.0297
23 6 12.7345 -1.4236 2.1869
24 6 12.5314 -2.3948 3.3515
25 9 13.6248 -3.2640 3.4298
26 9 12.4217 -1.6745 4.5457
27 7 10.3458 -1.0437 1.8721
28 6 6.0065 -1.4974 1.3121
29 1 -0.4849 0.8401 -0.0004
30 1 3.8647 -0.3622 0.0014
31 1 3.8484 -3.0419 0.8924
32 1 3.8492 -3.0431 -0.8875
33 1 6.1486 -4.1454 0.7384
34 1 6.0871 -4.0190 -1.0358
35 1 8.1153 -2.5761 -0.9904
36 1 8.4291 -4.1686 -0.2589
37 1 9.3500 -2.2566 1.1001
38 1 8.1580 -3.2344 1.9923
39 1 9.8754 2.1639 1.8012
40 1 12.3887 1.4033 2.1436
41 1 12.9084 -1.9870 1.2700
42 1 13.5951 -0.7866 2.3908
43 1 11.6203 -2.9709 3.1897
44 1 5.5412 -0.5126 1.3563
45 1 5.6721 -2.0979 2.1579
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001480288543.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:09
Heat of formation + Delta-G solvation = -55.883444 kcal
Electronic energy + Delta-G solvation = -30258.141521 eV
Core-core repulsion = 25754.983542 eV
Total energy + Delta-G solvation = -4503.157979 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-50.09412 -48.11521 -43.80047 -41.09725 -38.86982 -36.78127 -35.28266 -34.44907
-33.28637 -32.14812 -31.60933 -30.28436 -27.60276 -26.92216 -25.06429 -24.56091
-23.25463 -22.75831 -22.37988 -21.45628 -20.27368 -19.67107 -18.97961 -18.63533
-18.16888 -18.06037 -17.31696 -17.05009 -16.68499 -16.44209 -16.16439 -15.83589
-15.48458 -15.29856 -15.02186 -14.92505 -14.87861 -14.46637 -14.39606 -14.24621
-14.21108 -14.16443 -13.87132 -13.79128 -13.46586 -13.35840 -13.04816 -12.82420
-12.39295 -12.22037 -12.17640 -11.96608 -11.90531 -11.73558 -11.49072 -11.40950
-11.03200 -10.95530 -10.34555 -10.17697 -9.67053 -9.32146 -8.07029 -5.38688
0.34667 1.07272 1.18794 1.32975 1.36804 1.41797 1.92469 2.24277
2.42888 2.48164 3.17985 3.22488 3.25073 3.42189 3.51838 3.66768
3.76182 3.85333 3.89736 3.93420 4.05700 4.13010 4.29832 4.30369
4.33343 4.44351 4.57896 4.66408 4.72093 4.74474 4.77907 4.90560
4.94487 5.01590 5.07488 5.17267 5.25091 5.32391 5.47139 5.53249
5.72822 5.76685 6.18275 6.29827 6.70357 7.03874 7.04838 7.81486
7.98211 9.14530
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.018475 B = 0.002633 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1515.205054 B =10633.657931 C =11631.572334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.979 5.979
2 C -0.057 4.057
3 Si 0.944 3.056
4 H -0.284 1.284
5 H -0.266 1.266
6 H -0.288 1.288
7 C -0.229 4.229
8 H 0.065 0.935
9 N -0.763 5.763
10 C 0.161 3.839
11 C -0.098 4.098
12 H 0.058 0.942
13 C -0.107 4.107
14 C -0.124 4.124
15 C 0.083 3.917
16 N -0.596 5.596
17 C 0.586 3.414
18 O -0.582 6.582
19 C -0.025 4.025
20 C -0.204 4.204
21 C 0.022 3.978
22 N -0.284 5.284
23 C 0.074 3.926
24 C 0.251 3.749
25 F -0.197 7.197
26 F -0.216 7.216
27 N -0.263 5.263
28 C 0.121 3.879
29 H 0.258 0.742
30 H 0.361 0.639
31 H 0.034 0.966
32 H 0.034 0.966
33 H 0.079 0.921
34 H 0.077 0.923
35 H 0.054 0.946
36 H 0.109 0.891
37 H 0.133 0.867
38 H 0.080 0.920
39 H 0.159 0.841
40 H 0.232 0.768
41 H 0.156 0.844
42 H 0.161 0.839
43 H 0.131 0.869
44 H 0.056 0.944
45 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 38.577 -7.536 4.055 39.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.630 5.630
2 C -0.248 4.248
3 Si 0.772 3.228
4 H -0.211 1.211
5 H -0.191 1.191
6 H -0.215 1.215
7 C -0.360 4.360
8 H 0.083 0.917
9 N -0.408 5.408
10 C 0.035 3.965
11 C -0.118 4.118
12 H 0.076 0.924
13 C -0.145 4.145
14 C -0.162 4.162
15 C -0.038 4.038
16 N -0.327 5.327
17 C 0.374 3.626
18 O -0.460 6.460
19 C -0.183 4.183
20 C -0.232 4.232
21 C -0.120 4.120
22 N -0.071 5.071
23 C -0.047 4.047
24 C 0.197 3.803
25 F -0.178 7.178
26 F -0.197 7.197
27 N -0.099 5.099
28 C -0.002 4.002
29 H 0.067 0.933
30 H 0.194 0.806
31 H 0.052 0.948
32 H 0.052 0.948
33 H 0.097 0.903
34 H 0.096 0.904
35 H 0.073 0.927
36 H 0.128 0.872
37 H 0.150 0.850
38 H 0.098 0.902
39 H 0.177 0.823
40 H 0.248 0.752
41 H 0.173 0.827
42 H 0.179 0.821
43 H 0.149 0.851
44 H 0.074 0.926
45 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 38.222 -8.375 4.130 39.346
hybrid contribution -0.625 2.223 0.165 2.316
sum 37.597 -6.152 4.295 38.338
Atomic orbital electron populations
1.69853 1.06674 1.26535 1.59963 1.25341 0.95994 1.00526 1.02980
0.85580 0.78310 0.80918 0.77959 1.21055 1.19088 1.21452 1.19083
0.82591 0.93625 1.40744 0.91661 1.42884 1.02731 1.04298 1.90910
1.20838 0.89484 0.87218 0.98981 1.21600 0.94612 0.98884 0.96676
0.92381 1.21519 0.94803 0.94572 1.03595 1.21899 0.95635 1.01883
0.96807 1.22712 0.97476 0.85396 0.98250 1.48083 1.07045 1.08344
1.69212 1.17579 0.85848 0.82943 0.76217 1.90798 1.63805 1.37533
1.53873 1.21661 0.92771 0.92514 1.11370 1.22003 0.92851 0.99338
1.08978 1.23456 1.00143 0.84228 1.04177 1.45625 1.05650 1.06259
1.49596 1.23365 0.84664 0.95647 1.00975 1.22278 0.89860 0.86629
0.81565 1.93033 1.57839 1.70452 1.96477 1.93018 1.96611 1.79476
1.50631 1.73175 0.90903 1.25665 1.20173 1.21557 0.79268 1.01073
0.98285 0.93255 0.80587 0.94802 0.94772 0.90271 0.90388 0.92676
0.87234 0.85007 0.90199 0.82336 0.75206 0.82665 0.82125 0.85121
0.92553 0.90307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -65.16 13.97 21.65 0.30 -64.85 16
2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16
3 Si 0.94 50.25 27.73 68.60 1.90 52.16 16
4 H -0.28 -15.11 7.11 99.48 0.71 -14.41 16
5 H -0.27 -13.52 6.52 99.48 0.65 -12.87 16
6 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16
7 C -0.23 -13.77 10.47 84.03 0.88 -12.89 16
8 H 0.07 4.18 8.06 -2.91 -0.02 4.15 16
9 N -0.76 -38.45 5.18 -343.47 -1.78 -40.23 16
10 C 0.16 6.29 5.65 86.38 0.49 6.78 16
11 C -0.10 -3.06 2.38 -10.72 -0.03 -3.09 16
12 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16
13 C -0.11 -2.28 5.17 30.62 0.16 -2.12 16
14 C -0.12 -2.08 6.08 30.67 0.19 -1.90 16
15 C 0.08 1.58 6.11 86.36 0.53 2.11 16
16 N -0.60 -17.09 2.97 -822.44 -2.44 -19.53 16
17 C 0.59 19.24 7.69 86.75 0.67 19.91 16
18 O -0.58 -24.56 16.36 -3.94 -0.06 -24.62 16
19 C -0.02 -0.60 6.83 42.45 0.29 -0.31 16
20 C -0.20 -3.98 10.81 22.41 0.24 -3.74 16
21 C 0.02 0.22 11.40 83.54 0.95 1.17 16
22 N -0.28 -2.76 3.39 -347.94 -1.18 -3.94 16
23 C 0.07 0.07 6.59 86.38 0.57 0.64 16
24 C 0.25 1.49 5.37 71.98 0.39 1.88 16
25 F -0.20 -1.52 17.34 44.97 0.78 -0.74 16
26 F -0.22 -2.80 17.32 44.97 0.78 -2.02 16
27 N -0.26 -4.40 8.06 -48.18 -0.39 -4.78 16
28 C 0.12 4.04 5.53 86.36 0.48 4.52 16
29 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16
30 H 0.36 18.38 4.75 -92.71 -0.44 17.94 16
31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16
34 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16
35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16
37 H 0.13 2.22 4.17 -25.52 -0.11 2.11 16
38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
39 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16
40 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16
41 H 0.16 -0.61 8.14 -2.38 -0.02 -0.62 16
42 H 0.16 -0.81 8.04 -2.39 -0.02 -0.83 16
43 H 0.13 0.65 7.96 -2.39 -0.02 0.63 16
44 H 0.06 2.35 6.20 -2.38 -0.01 2.34 16
45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
Total: -1.00 -86.98 373.66 4.60 -82.38
By element:
Atomic # 1 Polarization: 15.86 SS G_CDS: 0.43 Total: 16.29 kcal
Atomic # 6 Polarization: 3.64 SS G_CDS: 6.27 Total: 9.90 kcal
Atomic # 7 Polarization: -127.85 SS G_CDS: -5.49 Total: -133.33 kcal
Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal
Atomic # 9 Polarization: -4.32 SS G_CDS: 1.56 Total: -2.76 kcal
Atomic # 14 Polarization: 50.25 SS G_CDS: 1.90 Total: 52.16 kcal
Total: -86.98 4.60 -82.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480288543.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.492 kcal
(2) G-P(sol) polarization free energy of solvation -86.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds