Wall clock time and date at job start Sat Apr 11 2020 06:37:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.36099 * 116.99361 * 2 1
4 4 C 1.35429 * 120.41562 * 90.00228 * 3 2 1
5 5 C 1.50701 * 119.69734 * 359.96946 * 4 3 2
6 6 N 1.35869 * 120.60673 * 179.69783 * 4 3 2
7 7 H 0.97000 * 119.26491 * 180.24687 * 6 4 3
8 8 C 1.35458 * 121.46828 * 0.27500 * 6 4 3
9 9 C 1.35194 * 120.79006 * 0.02562 * 8 6 4
10 10 C 1.50696 * 120.33867 * 179.97438 * 9 8 6
11 11 N 1.46893 * 109.47044 * 259.99560 * 10 9 8
12 12 C 1.46896 * 111.00213 * 293.95584 * 11 10 9
13 13 C 1.46908 * 110.99983 * 169.99903 * 11 10 9
14 14 C 1.50702 * 109.47097 * 190.00207 * 13 11 10
15 15 C 1.38633 * 119.74688 * 269.72957 * 14 13 11
16 16 C 1.37624 * 120.24545 * 179.71830 * 15 14 13
17 17 C 1.40709 * 119.74377 * 0.57703 * 16 15 14
18 18 C 1.41400 * 120.24415 * 179.68096 * 17 16 15
19 19 H 1.07999 * 119.99807 * 204.40387 * 18 17 16
20 20 C 1.39943 * 120.00200 * 24.39790 * 18 17 16
21 21 N 1.30821 * 119.99767 * 17.85259 * 20 18 17
22 22 Si 1.86803 * 120.00303 * 197.85066 * 20 18 17
23 23 H 1.48501 * 109.46808 * 90.00144 * 22 20 18
24 24 H 1.48494 * 109.47085 * 210.00196 * 22 20 18
25 25 H 1.48501 * 109.46798 * 330.00067 * 22 20 18
26 26 C 1.40718 * 119.51288 * 359.69664 * 17 16 15
27 27 C 1.37611 * 119.74542 * 359.97438 * 26 17 16
28 28 C 1.41278 * 119.32441 * 359.97438 * 9 8 6
29 29 O 1.22286 * 120.67956 * 180.02562 * 28 9 8
30 30 H 1.09004 * 109.46607 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47504 * 299.99611 * 1 2 3
32 32 H 1.09001 * 109.47322 * 60.00322 * 1 2 3
33 33 H 1.08992 * 109.47370 * 269.73200 * 5 4 3
34 34 H 1.09004 * 109.46847 * 149.72720 * 5 4 3
35 35 H 1.09005 * 109.47104 * 29.73291 * 5 4 3
36 36 H 1.08003 * 119.60410 * 179.97438 * 8 6 4
37 37 H 1.09006 * 109.47182 * 19.99606 * 10 9 8
38 38 H 1.09002 * 109.47004 * 139.99917 * 10 9 8
39 39 H 1.08997 * 109.47126 * 59.99765 * 12 11 10
40 40 H 1.09007 * 109.47234 * 179.97438 * 12 11 10
41 41 H 1.09001 * 109.47129 * 299.99671 * 12 11 10
42 42 H 1.08995 * 109.46811 * 310.00351 * 13 11 10
43 43 H 1.08996 * 109.46859 * 70.00566 * 13 11 10
44 44 H 1.08001 * 119.88179 * 359.97438 * 15 14 13
45 45 H 1.08005 * 120.12794 * 180.27506 * 16 15 14
46 46 H 0.96998 * 120.00214 * 179.97438 * 21 20 18
47 47 H 1.08000 * 120.12633 * 179.97438 * 26 17 16
48 48 H 1.08000 * 119.87739 * 179.97438 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0468 1.2127 0.0000
4 6 2.3580 1.8236 1.1679
5 6 2.0166 1.1548 2.4745
6 7 2.9802 3.0315 1.1724
7 1 3.1973 3.4499 2.0202
8 6 3.3036 3.6647 0.0195
9 6 3.0144 3.1102 -1.1792
10 6 3.3783 3.8239 -2.4556
11 7 2.1904 4.4993 -2.9946
12 6 1.1762 3.5239 -3.4165
13 6 2.5512 5.3956 -4.1012
14 6 1.3630 6.2484 -4.4648
15 6 0.4675 5.8063 -5.4263
16 6 -0.6242 6.5741 -5.7621
17 6 -0.8229 7.8174 -5.1340
18 6 -1.9373 8.6179 -5.4758
19 1 -1.9021 9.6863 -5.3219
20 6 -3.0857 8.0258 -6.0134
21 7 -3.2802 6.7388 -5.8829
22 14 -4.3408 9.0732 -6.9174
23 1 -3.9941 9.1260 -8.3604
24 1 -5.6915 8.4782 -6.7542
25 1 -4.3344 10.4480 -6.3560
26 6 0.0957 8.2586 -4.1636
27 6 1.1765 7.4712 -3.8388
28 6 2.3677 1.8549 -1.2229
29 8 2.0950 1.3305 -2.2934
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.0208 1.4641 2.7917
34 1 2.7453 1.4438 3.2319
35 1 2.0369 0.0727 2.3450
36 1 3.7975 4.6244 0.0582
37 1 4.1542 4.5616 -2.2509
38 1 3.7470 3.1012 -3.1835
39 1 0.8762 2.9188 -2.5610
40 1 0.3073 4.0508 -3.8111
41 1 1.5924 2.8785 -4.1900
42 1 3.3781 6.0362 -3.7950
43 1 2.8513 4.8032 -4.9656
44 1 0.6249 4.8540 -5.9108
45 1 -1.3231 6.2258 -6.5083
46 1 -4.0763 6.3283 -6.2552
47 1 -0.0470 9.2114 -3.6757
48 1 1.8831 7.8079 -3.0946
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000931324175.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:34
Heat of formation + Delta-G solvation = -11.899229 kcal
Electronic energy + Delta-G solvation = -29506.255086 eV
Core-core repulsion = 25526.941185 eV
Total energy + Delta-G solvation = -3979.313901 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.38520 -38.31448 -38.23909 -37.53266 -36.05801 -33.72886 -32.93671 -31.40476
-30.18315 -29.22621 -28.78715 -26.99487 -26.84759 -26.07327 -24.28396 -22.98681
-22.21716 -21.16411 -20.73131 -19.59036 -18.43613 -18.05440 -17.21669 -16.92870
-16.20491 -15.86469 -15.31676 -15.09582 -14.79522 -14.70514 -14.44823 -14.34153
-13.89410 -13.61021 -13.47341 -13.38276 -13.09291 -12.95410 -12.82248 -12.61845
-12.34489 -12.08442 -11.86647 -11.81608 -11.56618 -11.39583 -11.15416 -10.99967
-10.84715 -10.78368 -10.47832 -10.40639 -10.22566 -9.52876 -9.34249 -9.28676
-9.06504 -9.01659 -7.96952 -7.68642 -7.33013 -7.19618 -6.69011 -4.27609
0.95510 1.23708 2.52101 2.81137 3.10230 3.13799 3.16820 3.23711
3.43048 3.90062 3.97666 4.07512 4.47592 4.56270 4.71284 4.82437
4.93850 4.95225 5.06877 5.16672 5.30450 5.36800 5.43099 5.52674
5.62696 5.76893 5.86261 5.92235 5.95459 6.05748 6.14397 6.33868
6.35664 6.40785 6.49384 6.51868 6.65141 6.70416 6.83414 7.02245
7.14430 7.29276 7.35786 7.46595 7.63160 7.67187 7.71322 7.98365
8.13204 8.20230 8.24500 8.38346 8.72147 8.97110 9.06220 10.25246
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.015259 B = 0.002453 C = 0.002319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1834.487887 B =11410.283654 C =12073.464664
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.309 6.309
3 C -0.073 4.073
4 C 0.136 3.864
5 C -0.122 4.122
6 N -0.578 5.578
7 H 0.420 0.580
8 C 0.140 3.860
9 C -0.230 4.230
10 C 0.118 3.882
11 N -0.530 5.530
12 C 0.034 3.966
13 C 0.118 3.882
14 C -0.202 4.202
15 C -0.093 4.093
16 C -0.166 4.166
17 C 0.111 3.889
18 C -0.465 4.465
19 H 0.076 0.924
20 C 0.076 3.924
21 N -0.793 5.793
22 Si 0.906 3.094
23 H -0.268 1.268
24 H -0.279 1.279
25 H -0.263 1.263
26 C -0.229 4.229
27 C -0.071 4.071
28 C 0.384 3.616
29 O -0.499 6.499
30 H 0.092 0.908
31 H 0.040 0.960
32 H 0.050 0.950
33 H 0.085 0.915
34 H 0.076 0.924
35 H 0.097 0.903
36 H 0.169 0.831
37 H 0.074 0.926
38 H 0.044 0.956
39 H 0.061 0.939
40 H 0.071 0.929
41 H 0.021 0.979
42 H 0.062 0.938
43 H 0.023 0.977
44 H 0.083 0.917
45 H 0.116 0.884
46 H 0.279 0.721
47 H 0.089 0.911
48 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.104 -9.013 17.389 22.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.224 6.224
3 C -0.124 4.124
4 C 0.027 3.973
5 C -0.179 4.179
6 N -0.186 5.186
7 H 0.256 0.744
8 C 0.013 3.987
9 C -0.237 4.237
10 C -0.011 4.011
11 N -0.254 5.254
12 C -0.114 4.114
13 C -0.008 4.008
14 C -0.204 4.204
15 C -0.112 4.112
16 C -0.185 4.185
17 C 0.109 3.891
18 C -0.494 4.494
19 H 0.094 0.906
20 C -0.142 4.142
21 N -0.418 5.418
22 Si 0.731 3.269
23 H -0.193 1.193
24 H -0.204 1.204
25 H -0.187 1.187
26 C -0.249 4.249
27 C -0.090 4.090
28 C 0.274 3.726
29 O -0.384 6.384
30 H 0.110 0.890
31 H 0.058 0.942
32 H 0.069 0.931
33 H 0.104 0.896
34 H 0.095 0.905
35 H 0.116 0.884
36 H 0.186 0.814
37 H 0.093 0.907
38 H 0.062 0.938
39 H 0.079 0.921
40 H 0.090 0.910
41 H 0.040 0.960
42 H 0.080 0.920
43 H 0.041 0.959
44 H 0.101 0.899
45 H 0.134 0.866
46 H 0.090 0.910
47 H 0.107 0.893
48 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 10.654 -9.400 17.110 22.240
hybrid contribution -0.522 0.309 -0.521 0.800
sum 10.131 -9.090 16.589 21.459
Atomic orbital electron populations
1.23023 0.79858 1.02899 1.00640 1.86114 1.19411 1.22948 1.93921
1.19496 1.08883 0.91643 0.92384 1.20660 0.93730 0.85501 0.97444
1.20970 1.02800 1.02598 0.91541 1.40904 1.51645 1.16554 1.09540
0.74369 1.21645 0.95856 0.96537 0.84665 1.20918 1.08439 0.99213
0.95118 1.20547 0.92985 0.95643 0.91898 1.62293 1.09582 1.19410
1.34141 1.22484 0.95739 0.93590 0.99587 1.20759 0.96103 0.93323
0.90619 1.18853 0.99938 0.97037 1.04584 1.20553 0.95279 0.97648
0.97688 1.21282 0.97527 0.96977 1.02729 1.17609 0.91184 0.91848
0.88479 1.19583 0.97688 0.95295 1.36862 0.90581 1.25897 0.98995
0.95085 0.94191 1.69837 1.26080 1.11595 1.34330 0.86348 0.79144
0.80923 0.80486 1.19333 1.20400 1.18695 1.20942 0.99633 1.01048
1.03277 1.20286 0.96794 0.94205 0.97669 1.17483 0.79808 0.86137
0.89170 1.90830 1.49756 1.66255 1.31523 0.89006 0.94164 0.93139
0.89610 0.90484 0.88430 0.81393 0.90721 0.93821 0.92053 0.91016
0.96001 0.91984 0.95864 0.89862 0.86612 0.90978 0.89267 0.89646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.34 11.13 101.05 1.13 1.46 16
2 O -0.31 -4.18 9.21 -35.62 -0.33 -4.51 16
3 C -0.07 -0.97 5.71 -39.22 -0.22 -1.19 16
4 C 0.14 1.18 6.82 -81.81 -0.56 0.62 16
5 C -0.12 -0.61 9.85 36.01 0.35 -0.25 16
6 N -0.58 -3.69 5.25 -9.22 -0.05 -3.73 16
7 H 0.42 0.91 8.77 -40.82 -0.36 0.55 16
8 C 0.14 1.22 10.79 -17.03 -0.18 1.04 16
9 C -0.23 -3.09 5.14 -104.55 -0.54 -3.63 16
10 C 0.12 1.73 5.01 -4.98 -0.02 1.71 16
11 N -0.53 -9.60 4.74 -245.83 -1.17 -10.77 16
12 C 0.03 0.68 7.80 60.06 0.47 1.15 16
13 C 0.12 2.21 5.11 -4.97 -0.03 2.19 16
14 C -0.20 -4.54 4.91 -104.33 -0.51 -5.05 16
15 C -0.09 -2.25 7.87 -39.66 -0.31 -2.56 16
16 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16
17 C 0.11 3.04 5.58 -106.82 -0.60 2.45 16
18 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16
19 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16
20 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16
21 N -0.79 -21.11 10.95 55.55 0.61 -20.51 16
22 Si 0.91 19.11 29.60 -169.99 -5.03 14.08 16
23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16
25 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16
26 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16
27 C -0.07 -1.62 9.67 -39.66 -0.38 -2.00 16
28 C 0.38 6.19 5.58 -37.06 -0.21 5.99 16
29 O -0.50 -9.97 14.19 -10.91 -0.15 -10.13 16
30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16
35 H 0.10 0.56 7.46 -51.93 -0.39 0.18 16
36 H 0.17 0.91 8.00 -52.48 -0.42 0.49 16
37 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16
38 H 0.04 0.71 7.92 -51.93 -0.41 0.30 16
39 H 0.06 1.25 5.02 -51.93 -0.26 0.99 16
40 H 0.07 1.61 5.90 -51.92 -0.31 1.30 16
41 H 0.02 0.45 7.92 -51.93 -0.41 0.04 16
42 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16
43 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16
44 H 0.08 1.91 7.99 -52.49 -0.42 1.49 16
45 H 0.12 3.22 6.16 -52.48 -0.32 2.90 16
46 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16
47 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16
48 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16
LS Contribution 390.76 15.07 5.89 5.89
Total: -1.00 -34.74 390.76 -10.03 -44.77
By element:
Atomic # 1 Polarization: 12.04 SS G_CDS: -7.04 Total: 5.00 kcal
Atomic # 6 Polarization: -17.34 SS G_CDS: -2.76 Total: -20.10 kcal
Atomic # 7 Polarization: -34.40 SS G_CDS: -0.61 Total: -35.01 kcal
Atomic # 8 Polarization: -14.15 SS G_CDS: -0.48 Total: -14.64 kcal
Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -34.74 -10.03 -44.77 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931324175.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.873 kcal
(2) G-P(sol) polarization free energy of solvation -34.740 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.899 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds