Wall clock time and date at job start Sat Apr 11 2020 06:37:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47290 * 2 1
4 4 H 1.09001 * 109.86016 * 179.00895 * 3 2 1
5 5 C 1.50781 * 109.81046 * 299.88209 * 3 2 1
6 6 C 1.38444 * 131.20064 * 299.26500 * 5 3 2
7 7 C 1.38144 * 120.10204 * 179.90632 * 6 5 3
8 8 C 1.38259 * 119.96084 * 0.40073 * 7 6 5
9 9 C 1.38145 * 119.96094 * 359.79033 * 8 7 6
10 10 C 1.38067 * 108.86105 * 119.54910 * 5 3 2
11 11 C 1.50771 * 108.86332 * 359.97438 * 10 5 3
12 12 N 1.46636 * 107.70364 * 359.97438 * 11 10 5
13 13 C 1.34778 * 126.56483 * 179.97438 * 12 11 10
14 14 O 1.21353 * 119.99907 * 174.99164 * 13 12 11
15 15 C 1.49451 * 120.00009 * 354.99531 * 13 12 11
16 16 O 1.21347 * 120.00072 * 5.13001 * 15 13 12
17 17 N 1.34776 * 119.99713 * 185.12508 * 15 13 12
18 18 C 1.46506 * 119.99768 * 185.00740 * 17 15 13
19 19 C 1.52999 * 109.47053 * 175.01954 * 18 17 15
20 20 C 1.50698 * 115.55225 * 279.43857 * 19 18 17
21 21 H 1.07996 * 120.00377 * 95.14270 * 20 19 18
22 22 C 1.37878 * 119.99720 * 275.15066 * 20 19 18
23 23 N 1.31516 * 120.00289 * 5.09648 * 22 20 19
24 24 Si 1.86798 * 120.00085 * 185.10499 * 22 20 19
25 25 H 1.48507 * 109.47211 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47450 * 119.99351 * 24 22 20
27 27 H 1.48496 * 109.47565 * 239.99878 * 24 22 20
28 28 C 1.52999 * 117.49844 * 133.72516 * 19 18 17
29 29 C 1.52995 * 117.49655 * 65.10484 * 19 18 17
30 30 H 1.08995 * 109.47297 * 185.07361 * 1 2 3
31 31 H 1.09004 * 109.47162 * 305.06584 * 1 2 3
32 32 H 1.08997 * 109.46872 * 65.06593 * 1 2 3
33 33 H 1.08996 * 109.47359 * 239.99647 * 2 1 3
34 34 H 1.09002 * 109.47104 * 119.99905 * 2 1 3
35 35 H 1.08007 * 119.95051 * 0.28567 * 6 5 3
36 36 H 1.08002 * 120.02352 * 180.16853 * 7 6 5
37 37 H 1.07996 * 120.01634 * 179.80859 * 8 7 6
38 38 H 1.08002 * 119.94632 * 180.02562 * 9 8 7
39 39 H 1.08998 * 109.81088 * 119.54716 * 11 10 5
40 40 H 1.09003 * 109.81545 * 240.45557 * 11 10 5
41 41 H 0.97001 * 120.00420 * 5.01473 * 17 15 13
42 42 H 1.09000 * 109.47205 * 295.02148 * 18 17 15
43 43 H 1.09004 * 109.46709 * 55.02173 * 18 17 15
44 44 H 0.96994 * 120.00410 * 184.99906 * 23 22 20
45 45 H 1.09001 * 117.49587 * 0.02562 * 28 19 18
46 46 H 1.09001 * 117.49809 * 145.01624 * 28 19 18
47 47 H 1.08999 * 117.50185 * 214.97663 * 29 19 18
48 48 H 1.09006 * 117.50490 * 359.97438 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1299 1.4499 0.0177
5 6 1.5440 2.1599 -1.2300
6 6 1.7461 1.9081 -2.5763
7 6 1.1705 2.7270 -3.5283
8 6 0.3981 3.8046 -3.1363
9 6 0.1993 4.0586 -1.7930
10 6 0.7728 3.2360 -0.8385
11 6 0.7236 3.2782 0.6679
12 7 1.5176 2.1530 1.1716
13 6 1.7286 1.8341 2.4640
14 8 2.3331 0.8209 2.7480
15 6 1.2181 2.7282 3.5472
16 8 0.5343 3.6909 3.2675
17 7 1.5171 2.4653 4.8348
18 6 0.9280 3.2756 5.9038
19 6 1.3276 2.6961 7.2623
20 6 0.5214 1.5102 7.7257
21 1 0.8793 0.5082 7.5405
22 6 -0.6733 1.7045 8.3860
23 7 -1.1589 2.9190 8.5233
24 14 -1.6021 0.2427 9.0858
25 1 -0.8497 -1.0052 8.7993
26 1 -1.7490 0.4065 10.5544
27 1 -2.9463 0.1643 8.4596
28 6 1.8237 3.6741 8.3291
29 6 2.8106 2.7319 7.6368
30 1 -0.3633 -1.0236 0.0909
31 1 -0.3634 0.5904 0.8412
32 1 -0.3633 0.4332 -0.9319
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.3498 1.0665 -2.8828
36 1 1.3267 2.5278 -4.5782
37 1 -0.0499 4.4471 -3.8798
38 1 -0.4045 4.9002 -1.4871
39 1 1.1453 4.2176 1.0251
40 1 -0.3080 3.1827 1.0067
41 1 2.1224 1.7396 5.0538
42 1 1.2909 4.3003 5.8250
43 1 -0.1580 3.2664 5.8101
44 1 -1.9607 3.0641 9.0494
45 1 1.8650 4.7304 8.0634
46 1 1.5668 3.4600 9.3666
47 1 3.2030 1.8980 8.2189
48 1 3.5016 3.1679 6.9154
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001119791081.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:15
Heat of formation + Delta-G solvation = -7.043702 kcal
Electronic energy + Delta-G solvation = -29850.021760 eV
Core-core repulsion = 25870.918411 eV
Total energy + Delta-G solvation = -3979.103350 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.34328 -39.72141 -38.19396 -36.81165 -36.61356 -33.73294 -33.29145 -31.98302
-31.30766 -30.94531 -27.71724 -27.18340 -25.95573 -25.24619 -23.29369 -22.81574
-21.70185 -21.27496 -20.43659 -19.59662 -19.09284 -17.65605 -16.88174 -16.54742
-16.38476 -16.08180 -15.73787 -15.07044 -15.00644 -14.64138 -14.58115 -14.46558
-14.03684 -13.88804 -13.61736 -13.36486 -13.28445 -13.03744 -12.92442 -12.67684
-12.47604 -11.95154 -11.87148 -11.61105 -11.57525 -11.46872 -11.24232 -11.06898
-11.03758 -10.91075 -10.76256 -10.53929 -10.31013 -9.70166 -9.36193 -9.26322
-9.11264 -9.04479 -8.55598 -8.51625 -8.36004 -8.26349 -6.11066 -4.18927
1.00760 1.07421 1.70882 2.37228 3.25448 3.34694 3.38397 3.42712
3.51580 3.70309 4.05736 4.21647 4.35896 4.66212 4.74678 4.78740
4.86352 4.97867 5.11891 5.17999 5.18555 5.26533 5.28821 5.35665
5.50701 5.56101 5.67081 5.69767 5.75954 5.81300 5.91654 5.93860
6.08158 6.17268 6.18505 6.24323 6.27286 6.32404 6.35065 6.45813
6.62239 6.65305 6.70380 6.96441 7.03043 7.18017 7.35920 7.42386
7.66331 7.80707 8.06991 8.30665 8.45970 8.83861 9.48753 10.97484
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.017389 B = 0.002597 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1609.862456 B =10778.470645 C =11069.226191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.132 4.132
3 C 0.181 3.819
4 H 0.089 0.911
5 C -0.097 4.097
6 C -0.093 4.093
7 C -0.119 4.119
8 C -0.115 4.115
9 C -0.095 4.095
10 C -0.101 4.101
11 C 0.152 3.848
12 N -0.589 5.589
13 C 0.532 3.468
14 O -0.512 6.512
15 C 0.500 3.500
16 O -0.531 6.531
17 N -0.671 5.671
18 C 0.160 3.840
19 C 0.025 3.975
20 C -0.498 4.498
21 H 0.062 0.938
22 C 0.072 3.928
23 N -0.876 5.876
24 Si 0.889 3.111
25 H -0.272 1.272
26 H -0.283 1.283
27 H -0.284 1.284
28 C -0.144 4.144
29 C -0.210 4.210
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.052 0.948
33 H 0.072 0.928
34 H 0.085 0.915
35 H 0.124 0.876
36 H 0.126 0.874
37 H 0.126 0.874
38 H 0.127 0.873
39 H 0.095 0.905
40 H 0.093 0.907
41 H 0.410 0.590
42 H 0.045 0.955
43 H 0.082 0.918
44 H 0.261 0.739
45 H 0.066 0.934
46 H 0.085 0.915
47 H 0.081 0.919
48 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.914 0.450 -22.425 22.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.170 4.170
3 C 0.078 3.922
4 H 0.107 0.893
5 C -0.097 4.097
6 C -0.111 4.111
7 C -0.137 4.137
8 C -0.133 4.133
9 C -0.113 4.113
10 C -0.101 4.101
11 C 0.030 3.970
12 N -0.323 5.323
13 C 0.316 3.684
14 O -0.386 6.386
15 C 0.279 3.721
16 O -0.409 6.409
17 N -0.320 5.320
18 C 0.038 3.962
19 C 0.024 3.976
20 C -0.535 4.535
21 H 0.080 0.920
22 C -0.132 4.132
23 N -0.512 5.512
24 Si 0.717 3.283
25 H -0.196 1.196
26 H -0.209 1.209
27 H -0.210 1.210
28 C -0.182 4.182
29 C -0.247 4.247
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.071 0.929
33 H 0.091 0.909
34 H 0.103 0.897
35 H 0.142 0.858
36 H 0.144 0.856
37 H 0.144 0.856
38 H 0.145 0.855
39 H 0.113 0.887
40 H 0.110 0.890
41 H 0.246 0.754
42 H 0.063 0.937
43 H 0.100 0.900
44 H 0.071 0.929
45 H 0.084 0.916
46 H 0.103 0.897
47 H 0.099 0.901
48 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 4.556 0.652 -22.262 22.733
hybrid contribution -0.374 -0.960 0.530 1.158
sum 4.182 -0.308 -21.731 22.132
Atomic orbital electron populations
1.21696 0.95207 1.01658 1.01843 1.21860 0.97046 0.94553 1.03513
1.19974 0.98478 0.92012 0.81785 0.89283 1.20195 0.99060 0.96569
0.93914 1.20440 1.00187 0.99895 0.90627 1.21051 0.97947 0.95384
0.99276 1.21076 0.98950 0.97833 0.95483 1.20509 0.99673 0.99199
0.91944 1.20466 0.98279 0.96181 0.95213 1.20422 0.97490 0.90446
0.88689 1.47662 1.50852 1.29578 1.04252 1.20130 0.80401 0.86183
0.81679 1.90746 1.40458 1.25574 1.81831 1.19731 0.82583 0.85578
0.84226 1.90712 1.38870 1.28619 1.82716 1.45970 1.46278 1.35366
1.04421 1.21331 0.98879 0.91185 0.84766 1.19054 0.90538 0.97486
0.90519 1.20456 1.04021 0.91068 1.37969 0.91970 1.24978 0.96598
0.95752 0.95839 1.70008 1.22227 1.20248 1.38701 0.86579 0.79864
0.83090 0.78781 1.19633 1.20911 1.20992 1.22513 1.02942 0.93922
0.98871 1.23005 0.93972 1.02999 1.04742 0.92651 0.92684 0.92860
0.90948 0.89656 0.85849 0.85611 0.85556 0.85525 0.88743 0.88951
0.75420 0.93666 0.90012 0.92898 0.91582 0.89671 0.90067 0.91517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.70 9.48 37.16 0.35 -1.35 16
2 C -0.13 -1.48 5.60 -26.73 -0.15 -1.63 16
3 C 0.18 2.11 3.29 -68.97 -0.23 1.89 16
4 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
5 C -0.10 -1.00 4.36 -104.57 -0.46 -1.46 16
6 C -0.09 -0.78 10.05 -39.54 -0.40 -1.18 16
7 C -0.12 -0.88 10.05 -39.61 -0.40 -1.27 16
8 C -0.12 -0.88 10.05 -39.61 -0.40 -1.28 16
9 C -0.09 -0.86 10.05 -39.54 -0.40 -1.25 16
10 C -0.10 -1.09 6.22 -104.57 -0.65 -1.74 16
11 C 0.15 1.93 5.53 -5.09 -0.03 1.91 16
12 N -0.59 -8.22 2.15 -168.99 -0.36 -8.58 16
13 C 0.53 8.87 7.75 -11.58 -0.09 8.78 16
14 O -0.51 -9.21 15.41 5.49 0.08 -9.13 16
15 C 0.50 9.31 7.85 -11.58 -0.09 9.22 16
16 O -0.53 -10.54 14.29 5.50 0.08 -10.46 16
17 N -0.67 -13.13 5.50 -60.73 -0.33 -13.47 16
18 C 0.16 3.54 5.57 -4.04 -0.02 3.52 16
19 C 0.02 0.58 1.36 -155.66 -0.21 0.37 16
20 C -0.50 -12.97 8.82 -34.44 -0.30 -13.27 16
21 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16
22 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16
23 N -0.88 -24.07 12.90 55.43 0.72 -23.36 16
24 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16
25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
28 C -0.14 -3.21 9.37 -26.73 -0.25 -3.46 16
29 C -0.21 -4.28 9.82 -26.74 -0.26 -4.54 16
30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.05 0.75 7.41 -51.93 -0.38 0.37 16
32 H 0.05 0.58 7.43 -51.93 -0.39 0.19 16
33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
34 H 0.08 1.13 6.74 -51.93 -0.35 0.78 16
35 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16
36 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16
37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16
38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
39 H 0.09 1.24 7.56 -51.93 -0.39 0.85 16
40 H 0.09 1.24 7.82 -51.93 -0.41 0.84 16
41 H 0.41 7.77 7.90 -40.82 -0.32 7.45 16
42 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16
43 H 0.08 2.06 8.12 -51.93 -0.42 1.63 16
44 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16
45 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16
46 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16
47 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
LS Contribution 397.92 15.07 6.00 6.00
Total: -1.00 -28.94 397.92 -10.19 -39.13
By element:
Atomic # 1 Polarization: 16.31 SS G_CDS: -7.27 Total: 9.04 kcal
Atomic # 6 Polarization: -0.85 SS G_CDS: -4.08 Total: -4.92 kcal
Atomic # 7 Polarization: -45.42 SS G_CDS: 0.02 Total: -45.40 kcal
Atomic # 8 Polarization: -19.75 SS G_CDS: 0.16 Total: -19.59 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -28.94 -10.19 -39.13 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001119791081.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.088 kcal
(2) G-P(sol) polarization free energy of solvation -28.941 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds