Wall clock time and date at job start Sat Apr 11 2020 06:37:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47290 * 2 1
4 4 H 1.09001 * 109.86016 * 179.00895 * 3 2 1
5 5 C 1.50781 * 109.81046 * 299.88209 * 3 2 1
6 6 C 1.38444 * 131.20064 * 299.26500 * 5 3 2
7 7 C 1.38144 * 120.10204 * 179.90632 * 6 5 3
8 8 C 1.38259 * 119.96084 * 0.40073 * 7 6 5
9 9 C 1.38145 * 119.96094 * 359.79033 * 8 7 6
10 10 C 1.38067 * 108.86105 * 119.54910 * 5 3 2
11 11 C 1.50771 * 108.86332 * 359.97438 * 10 5 3
12 12 N 1.46636 * 107.70364 * 359.97438 * 11 10 5
13 13 C 1.34778 * 126.56483 * 179.97438 * 12 11 10
14 14 O 1.21353 * 119.99907 * 174.99164 * 13 12 11
15 15 C 1.49451 * 120.00009 * 354.99531 * 13 12 11
16 16 O 1.21347 * 120.00072 * 5.13001 * 15 13 12
17 17 N 1.34776 * 119.99713 * 185.12508 * 15 13 12
18 18 C 1.46506 * 119.99768 * 185.00740 * 17 15 13
19 19 C 1.52999 * 109.47053 * 175.01954 * 18 17 15
20 20 C 1.50698 * 115.55225 * 279.43857 * 19 18 17
21 21 H 1.07996 * 120.00377 * 95.14270 * 20 19 18
22 22 C 1.37878 * 119.99720 * 275.15066 * 20 19 18
23 23 N 1.31516 * 120.00289 * 5.09648 * 22 20 19
24 24 Si 1.86798 * 120.00085 * 185.10499 * 22 20 19
25 25 H 1.48507 * 109.47211 * 359.97438 * 24 22 20
26 26 H 1.48495 * 109.47450 * 119.99351 * 24 22 20
27 27 H 1.48496 * 109.47565 * 239.99878 * 24 22 20
28 28 C 1.52999 * 117.49844 * 133.72516 * 19 18 17
29 29 C 1.52995 * 117.49655 * 65.10484 * 19 18 17
30 30 H 1.08995 * 109.47297 * 185.07361 * 1 2 3
31 31 H 1.09004 * 109.47162 * 305.06584 * 1 2 3
32 32 H 1.08997 * 109.46872 * 65.06593 * 1 2 3
33 33 H 1.08996 * 109.47359 * 239.99647 * 2 1 3
34 34 H 1.09002 * 109.47104 * 119.99905 * 2 1 3
35 35 H 1.08007 * 119.95051 * 0.28567 * 6 5 3
36 36 H 1.08002 * 120.02352 * 180.16853 * 7 6 5
37 37 H 1.07996 * 120.01634 * 179.80859 * 8 7 6
38 38 H 1.08002 * 119.94632 * 180.02562 * 9 8 7
39 39 H 1.08998 * 109.81088 * 119.54716 * 11 10 5
40 40 H 1.09003 * 109.81545 * 240.45557 * 11 10 5
41 41 H 0.97001 * 120.00420 * 5.01473 * 17 15 13
42 42 H 1.09000 * 109.47205 * 295.02148 * 18 17 15
43 43 H 1.09004 * 109.46709 * 55.02173 * 18 17 15
44 44 H 0.96994 * 120.00410 * 184.99906 * 23 22 20
45 45 H 1.09001 * 117.49587 * 0.02562 * 28 19 18
46 46 H 1.09001 * 117.49809 * 145.01624 * 28 19 18
47 47 H 1.08999 * 117.50185 * 214.97663 * 29 19 18
48 48 H 1.09006 * 117.50490 * 359.97438 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1299 1.4499 0.0177
5 6 1.5440 2.1599 -1.2300
6 6 1.7461 1.9081 -2.5763
7 6 1.1705 2.7270 -3.5283
8 6 0.3981 3.8046 -3.1363
9 6 0.1993 4.0586 -1.7930
10 6 0.7728 3.2360 -0.8385
11 6 0.7236 3.2782 0.6679
12 7 1.5176 2.1530 1.1716
13 6 1.7286 1.8341 2.4640
14 8 2.3331 0.8209 2.7480
15 6 1.2181 2.7282 3.5472
16 8 0.5343 3.6909 3.2675
17 7 1.5171 2.4653 4.8348
18 6 0.9280 3.2756 5.9038
19 6 1.3276 2.6961 7.2623
20 6 0.5214 1.5102 7.7257
21 1 0.8793 0.5082 7.5405
22 6 -0.6733 1.7045 8.3860
23 7 -1.1589 2.9190 8.5233
24 14 -1.6021 0.2427 9.0858
25 1 -0.8497 -1.0052 8.7993
26 1 -1.7490 0.4065 10.5544
27 1 -2.9463 0.1643 8.4596
28 6 1.8237 3.6741 8.3291
29 6 2.8106 2.7319 7.6368
30 1 -0.3633 -1.0236 0.0909
31 1 -0.3634 0.5904 0.8412
32 1 -0.3633 0.4332 -0.9319
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.3498 1.0665 -2.8828
36 1 1.3267 2.5278 -4.5782
37 1 -0.0499 4.4471 -3.8798
38 1 -0.4045 4.9002 -1.4871
39 1 1.1453 4.2176 1.0251
40 1 -0.3080 3.1827 1.0067
41 1 2.1224 1.7396 5.0538
42 1 1.2909 4.3003 5.8250
43 1 -0.1580 3.2664 5.8101
44 1 -1.9607 3.0641 9.0494
45 1 1.8650 4.7304 8.0634
46 1 1.5668 3.4600 9.3666
47 1 3.2030 1.8980 8.2189
48 1 3.5016 3.1679 6.9154
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001119791081.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:14
Heat of formation + Delta-G solvation = -21.786492 kcal
Electronic energy + Delta-G solvation = -29850.661056 eV
Core-core repulsion = 25870.918411 eV
Total energy + Delta-G solvation = -3979.742645 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.40208 -40.96610 -39.53934 -38.52729 -37.61599 -35.17135 -34.44012 -33.97757
-32.20805 -31.66335 -28.95440 -28.47098 -27.55312 -26.73540 -24.41033 -23.85252
-22.97504 -22.44042 -21.51623 -21.29930 -20.50768 -19.04927 -18.10531 -17.97393
-17.58396 -17.15213 -16.89807 -16.66310 -16.32537 -16.31118 -15.65952 -15.46362
-15.34006 -15.20664 -14.79256 -14.59535 -14.52881 -14.25797 -13.88051 -13.79944
-13.70882 -13.40589 -13.24666 -13.01250 -12.83852 -12.81828 -12.64298 -12.53264
-12.39201 -12.16140 -12.05055 -11.89476 -11.62118 -11.52544 -10.91096 -10.75433
-10.49199 -10.32597 -10.10815 -10.04816 -9.76380 -9.39329 -8.14298 -6.26498
0.27315 0.32632 0.43137 1.09614 1.38217 1.42377 1.51812 2.06143
2.37117 2.41209 2.77049 3.11519 3.14776 3.34439 3.38175 3.54236
3.84356 4.05606 4.11483 4.18246 4.23120 4.26152 4.44038 4.44707
4.50404 4.55452 4.58299 4.62314 4.66547 4.69681 4.75899 4.80595
4.87863 4.94723 4.99214 4.99392 5.09824 5.20513 5.25077 5.27257
5.31821 5.49034 5.56576 5.57924 5.59389 5.63299 5.74887 5.94899
6.03738 6.21632 6.33931 6.62010 6.80224 6.93188 7.43277 8.93970
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.017389 B = 0.002597 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1609.862456 B =10778.470645 C =11069.226191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.127 4.127
3 C 0.176 3.824
4 H 0.094 0.906
5 C -0.105 4.105
6 C -0.094 4.094
7 C -0.113 4.113
8 C -0.113 4.113
9 C -0.103 4.103
10 C -0.120 4.120
11 C 0.153 3.847
12 N -0.582 5.582
13 C 0.535 3.465
14 O -0.529 6.529
15 C 0.498 3.502
16 O -0.546 6.546
17 N -0.671 5.671
18 C 0.178 3.822
19 C -0.001 4.001
20 C -0.508 4.508
21 H 0.055 0.945
22 C 0.027 3.973
23 N -0.903 5.903
24 Si 0.945 3.055
25 H -0.268 1.268
26 H -0.278 1.278
27 H -0.286 1.286
28 C -0.149 4.149
29 C -0.179 4.179
30 H 0.061 0.939
31 H 0.026 0.974
32 H 0.062 0.938
33 H 0.102 0.898
34 H 0.062 0.938
35 H 0.146 0.854
36 H 0.157 0.843
37 H 0.153 0.847
38 H 0.135 0.865
39 H 0.085 0.915
40 H 0.077 0.923
41 H 0.414 0.586
42 H 0.050 0.950
43 H 0.043 0.957
44 H 0.261 0.739
45 H 0.077 0.923
46 H 0.065 0.935
47 H 0.085 0.915
48 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.829 -0.134 -25.392 26.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.165 4.165
3 C 0.074 3.926
4 H 0.112 0.888
5 C -0.106 4.106
6 C -0.112 4.112
7 C -0.130 4.130
8 C -0.131 4.131
9 C -0.121 4.121
10 C -0.121 4.121
11 C 0.031 3.969
12 N -0.315 5.315
13 C 0.318 3.682
14 O -0.405 6.405
15 C 0.279 3.721
16 O -0.425 6.425
17 N -0.321 5.321
18 C 0.055 3.945
19 C -0.002 4.002
20 C -0.545 4.545
21 H 0.073 0.927
22 C -0.174 4.174
23 N -0.541 5.541
24 Si 0.771 3.229
25 H -0.193 1.193
26 H -0.204 1.204
27 H -0.213 1.213
28 C -0.187 4.187
29 C -0.216 4.216
30 H 0.080 0.920
31 H 0.045 0.955
32 H 0.081 0.919
33 H 0.121 0.879
34 H 0.081 0.919
35 H 0.164 0.836
36 H 0.174 0.826
37 H 0.171 0.829
38 H 0.153 0.847
39 H 0.103 0.897
40 H 0.095 0.905
41 H 0.250 0.750
42 H 0.069 0.931
43 H 0.062 0.938
44 H 0.070 0.930
45 H 0.096 0.904
46 H 0.084 0.916
47 H 0.103 0.897
48 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 5.479 0.065 -25.262 25.849
hybrid contribution -0.670 -0.736 1.319 1.652
sum 4.809 -0.671 -23.943 24.431
Atomic orbital electron populations
1.21640 0.95577 1.01564 1.01068 1.21831 0.96584 0.94239 1.03827
1.20167 0.98726 0.92267 0.81472 0.88839 1.20131 0.99733 0.96462
0.94254 1.20743 1.00144 1.00691 0.89603 1.21465 0.96527 0.94415
1.00622 1.21441 0.98367 0.98119 0.95147 1.20736 0.99666 0.99249
0.92481 1.20334 1.00211 0.97722 0.93791 1.20369 0.96282 0.89541
0.90742 1.47660 1.49915 1.29850 1.04049 1.19578 0.80684 0.85694
0.82196 1.90736 1.41573 1.25981 1.82216 1.20129 0.82006 0.85566
0.84433 1.90698 1.39346 1.29374 1.83040 1.45839 1.46491 1.35383
1.04402 1.20880 0.96617 0.91762 0.85204 1.19061 0.92594 0.97437
0.91123 1.20719 1.04435 0.91717 1.37664 0.92715 1.25631 0.97476
0.97811 0.96452 1.70100 1.22672 1.21753 1.39530 0.85707 0.78421
0.80534 0.78213 1.19260 1.20374 1.21270 1.22454 1.03981 0.94711
0.97584 1.22998 0.92612 1.02092 1.03903 0.91988 0.95513 0.91882
0.87941 0.91907 0.83634 0.82574 0.82922 0.84700 0.89710 0.90498
0.74962 0.93137 0.93819 0.93020 0.90448 0.91619 0.89669 0.88956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.19 9.48 71.98 0.68 -2.51 16
2 C -0.13 -2.71 5.60 30.59 0.17 -2.54 16
3 C 0.18 3.97 3.29 44.25 0.15 4.12 16
4 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16
5 C -0.11 -1.99 4.36 -19.83 -0.09 -2.08 16
6 C -0.09 -1.25 10.05 22.30 0.22 -1.03 16
7 C -0.11 -1.20 10.05 22.25 0.22 -0.97 16
8 C -0.11 -1.34 10.05 22.25 0.22 -1.11 16
9 C -0.10 -1.69 10.05 22.30 0.22 -1.46 16
10 C -0.12 -2.51 6.22 -19.83 -0.12 -2.63 16
11 C 0.15 4.03 5.53 85.63 0.47 4.50 16
12 N -0.58 -16.56 2.15 -806.93 -1.74 -18.30 16
13 C 0.54 18.33 7.75 87.27 0.68 19.01 16
14 O -0.53 -19.37 15.41 -3.26 -0.05 -19.42 16
15 C 0.50 19.20 7.85 87.27 0.69 19.89 16
16 O -0.55 -22.54 14.29 -3.24 -0.05 -22.59 16
17 N -0.67 -26.88 5.50 -464.40 -2.55 -29.43 16
18 C 0.18 8.09 5.57 86.38 0.48 8.57 16
19 C 0.00 -0.06 1.36 -52.93 -0.07 -0.14 16
20 C -0.51 -26.88 8.82 25.60 0.23 -26.65 16
21 H 0.05 2.91 7.82 -2.91 -0.02 2.88 16
22 C 0.03 1.47 5.40 84.65 0.46 1.93 16
23 N -0.90 -50.84 12.90 21.45 0.28 -50.56 16
24 Si 0.95 43.26 29.54 68.60 2.03 45.29 16
25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
27 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16
28 C -0.15 -6.64 9.37 30.59 0.29 -6.35 16
29 C -0.18 -7.09 9.82 30.59 0.30 -6.79 16
30 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
31 H 0.03 0.74 7.41 -2.39 -0.02 0.72 16
32 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16
33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.06 1.65 6.74 -2.39 -0.02 1.63 16
35 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16
36 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16
37 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16
38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16
39 H 0.08 2.34 7.56 -2.39 -0.02 2.32 16
40 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16
41 H 0.41 15.89 7.90 -92.71 -0.73 15.15 16
42 H 0.05 2.20 7.94 -2.39 -0.02 2.19 16
43 H 0.04 2.30 8.12 -2.39 -0.02 2.28 16
44 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16
45 H 0.08 3.22 8.08 -2.39 -0.02 3.20 16
46 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16
47 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16
48 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16
Total: -1.00 -63.71 397.92 3.35 -60.36
By element:
Atomic # 1 Polarization: 30.67 SS G_CDS: 0.24 Total: 30.91 kcal
Atomic # 6 Polarization: -1.45 SS G_CDS: 5.20 Total: 3.74 kcal
Atomic # 7 Polarization: -94.27 SS G_CDS: -4.02 Total: -98.29 kcal
Atomic # 8 Polarization: -41.91 SS G_CDS: -0.10 Total: -42.01 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal
Total: -63.71 3.35 -60.36 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001119791081.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.571 kcal
(2) G-P(sol) polarization free energy of solvation -63.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.786 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds