Wall clock time and date at job start Sat Apr 11 2020 06:37:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 F 1.39906 * 109.46887 * 2 1
4 4 F 1.39896 * 109.47164 * 240.00627 * 2 1 3
5 5 C 1.52996 * 109.47371 * 119.99597 * 2 1 3
6 6 C 1.53008 * 109.47022 * 180.02562 * 5 2 1
7 7 C 1.50702 * 109.46955 * 180.02562 * 6 5 2
8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5
9 9 N 1.34774 * 119.99814 * 180.02562 * 7 6 5
10 10 C 1.46503 * 119.99603 * 180.02562 * 9 7 6
11 11 C 1.50709 * 109.46729 * 179.97438 * 10 9 7
12 12 C 1.40073 * 126.12313 * 259.88192 * 11 10 9
13 13 N 1.31006 * 108.25295 * 179.83823 * 12 11 10
14 14 N 1.39749 * 108.17885 * 0.35335 * 13 12 11
15 15 C 1.34642 * 126.12567 * 79.99778 * 11 10 9
16 16 C 1.51035 * 127.91038 * 359.68657 * 15 11 10
17 17 N 1.47494 * 107.00460 * 169.71753 * 16 15 11
18 18 C 1.36935 * 121.01655 * 222.90206 * 17 16 15
19 19 H 1.08003 * 120.00000 * 155.90950 * 18 17 16
20 20 C 1.38810 * 120.00058 * 335.91821 * 18 17 16
21 21 N 1.31616 * 119.99791 * 344.45450 * 20 18 17
22 22 Si 1.86801 * 120.00237 * 164.45798 * 20 18 17
23 23 H 1.48501 * 109.46987 * 89.99326 * 22 20 18
24 24 H 1.48493 * 109.47222 * 209.99609 * 22 20 18
25 25 H 1.48502 * 109.46853 * 330.00010 * 22 20 18
26 26 C 1.47090 * 117.97260 * 42.92063 * 17 16 15
27 27 C 1.46556 * 127.32195 * 179.45647 * 14 13 12
28 28 H 1.08995 * 109.47460 * 299.99449 * 1 2 3
29 29 H 1.08997 * 109.47629 * 60.00332 * 1 2 3
30 30 H 1.09008 * 109.46544 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.46676 * 60.00714 * 5 2 1
32 32 H 1.08995 * 109.47810 * 300.00350 * 5 2 1
33 33 H 1.09002 * 109.46965 * 60.00704 * 6 5 2
34 34 H 1.08995 * 109.46961 * 300.00683 * 6 5 2
35 35 H 0.96995 * 120.00182 * 359.97438 * 9 7 6
36 36 H 1.08997 * 109.47524 * 60.00106 * 10 9 7
37 37 H 1.08991 * 109.47107 * 299.99056 * 10 9 7
38 38 H 1.08007 * 125.87116 * 0.02562 * 12 11 10
39 39 H 1.08997 * 109.95132 * 289.09278 * 16 15 11
40 40 H 1.09000 * 109.94610 * 50.34741 * 16 15 11
41 41 H 0.97001 * 120.00162 * 180.02562 * 21 20 18
42 42 H 1.09000 * 109.51221 * 56.33544 * 26 17 16
43 43 H 1.09002 * 109.51614 * 176.49615 * 26 17 16
44 44 H 1.09005 * 109.50594 * 41.61326 * 27 14 13
45 45 H 1.08998 * 109.50897 * 281.47318 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3191 0.0000
4 9 1.9963 -0.6594 -1.1423
5 6 2.0400 -0.7211 1.2492
6 6 3.5701 -0.7205 1.2495
7 6 4.0725 -1.4314 2.4797
8 8 3.2845 -1.8926 3.2779
9 7 5.3976 -1.5537 2.6934
10 6 5.8859 -2.2452 3.8890
11 6 7.3930 -2.2445 3.8893
12 6 8.2193 -3.3078 3.5037
13 7 9.4660 -2.9281 3.6377
14 7 9.4728 -1.6164 4.1197
15 6 8.1862 -1.2226 4.2624
16 6 7.7701 0.1435 4.7541
17 7 8.9842 0.8057 5.2668
18 6 8.9604 1.5137 6.4387
19 1 9.8712 1.6582 7.0009
20 6 7.7657 2.0454 6.9042
21 7 6.7301 2.1425 6.0977
22 14 7.6276 2.6232 8.6752
23 1 8.0106 4.0554 8.7599
24 1 6.2280 2.4566 9.1426
25 1 8.5346 1.8169 9.5310
26 6 10.2214 0.6828 4.4807
27 6 10.6426 -0.7899 4.4300
28 1 -0.3634 0.5137 0.8900
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0278 0.0005
31 1 1.6768 -1.7488 1.2492
32 1 1.6767 -0.2074 2.1392
33 1 3.9330 0.3073 1.2497
34 1 3.9337 -1.2340 0.3595
35 1 6.0278 -1.1845 2.0552
36 1 5.5235 -3.2732 3.8877
37 1 5.5219 -1.7326 4.7793
38 1 7.8860 -4.2734 3.1530
39 1 7.3498 0.7226 3.9319
40 1 7.0356 0.0433 5.5532
41 1 5.8953 2.5145 6.4228
42 1 10.0470 1.0466 3.4681
43 1 11.0104 1.2712 4.9491
44 1 11.3995 -0.9257 3.6575
45 1 11.0509 -1.0852 5.3966
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001128392376.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:21
Heat of formation + Delta-G solvation = -47.620983 kcal
Electronic energy + Delta-G solvation = -30104.401935 eV
Core-core repulsion = 25601.602244 eV
Total energy + Delta-G solvation = -4502.799691 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.11284 -47.08373 -41.01373 -39.40705 -36.33698 -34.93489 -34.17347 -33.01164
-31.45898 -30.76461 -30.23375 -28.81373 -26.31559 -25.49690 -24.18553 -23.43016
-21.81852 -21.62932 -20.25805 -20.03551 -18.42969 -17.79233 -17.42446 -16.74380
-16.51455 -16.24527 -15.76742 -15.64375 -15.51043 -15.14500 -14.64946 -14.21373
-13.91268 -13.75055 -13.60996 -13.47680 -13.41873 -13.36277 -13.26595 -13.14756
-12.82862 -12.53287 -12.45071 -12.41619 -11.96044 -11.71951 -11.63646 -11.36608
-11.28302 -11.03002 -10.98391 -10.90075 -10.74176 -10.22557 -10.20798 -10.10242
-9.76722 -8.92884 -8.77072 -8.57396 -7.95102 -7.10234 -6.03354 -3.45925
2.39919 2.83082 2.90455 2.99321 3.27493 3.35896 3.37216 3.50486
3.74710 3.98095 4.24187 4.24886 4.30118 4.81285 4.90996 4.93563
5.03953 5.05242 5.18899 5.25259 5.30647 5.35711 5.42947 5.52098
5.53574 5.55583 5.59780 5.70389 5.77101 5.82303 5.84249 6.11700
6.20472 6.35297 6.39912 6.52047 6.69140 6.88909 7.06362 7.12398
7.55212 7.58496 7.75501 8.07355 8.21328 8.42128 8.90120 9.52598
10.05114 11.07650
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.010035 B = 0.003091 C = 0.002601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.646696 B = 9057.618598 C =10760.467024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.284 3.716
3 F -0.200 7.200
4 F -0.203 7.203
5 C -0.143 4.143
6 C -0.148 4.148
7 C 0.516 3.484
8 O -0.549 6.549
9 N -0.717 5.717
10 C 0.210 3.790
11 C -0.289 4.289
12 C 0.056 3.944
13 N -0.318 5.318
14 N -0.358 5.358
15 C 0.120 3.880
16 C 0.231 3.769
17 N -0.596 5.596
18 C -0.265 4.265
19 H 0.073 0.927
20 C 0.009 3.991
21 N -0.903 5.903
22 Si 0.908 3.092
23 H -0.285 1.285
24 H -0.287 1.287
25 H -0.278 1.278
26 C 0.129 3.871
27 C 0.113 3.887
28 H 0.090 0.910
29 H 0.080 0.920
30 H 0.089 0.911
31 H 0.101 0.899
32 H 0.103 0.897
33 H 0.103 0.897
34 H 0.098 0.902
35 H 0.400 0.600
36 H 0.068 0.932
37 H 0.074 0.926
38 H 0.175 0.825
39 H 0.057 0.943
40 H 0.109 0.891
41 H 0.260 0.740
42 H 0.036 0.964
43 H 0.085 0.915
44 H 0.080 0.920
45 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.765 -5.822 -11.697 14.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C 0.248 3.752
3 F -0.181 7.181
4 F -0.184 7.184
5 C -0.181 4.181
6 C -0.188 4.188
7 C 0.302 3.698
8 O -0.427 6.427
9 N -0.368 5.368
10 C 0.086 3.914
11 C -0.301 4.301
12 C -0.131 4.131
13 N -0.138 5.138
14 N -0.139 5.139
15 C -0.012 4.012
16 C 0.104 3.896
17 N -0.319 5.319
18 C -0.393 4.393
19 H 0.091 0.909
20 C -0.191 4.191
21 N -0.546 5.546
22 Si 0.737 3.263
23 H -0.211 1.211
24 H -0.212 1.212
25 H -0.204 1.204
26 C 0.000 4.000
27 C -0.010 4.010
28 H 0.109 0.891
29 H 0.099 0.901
30 H 0.108 0.892
31 H 0.119 0.881
32 H 0.122 0.878
33 H 0.121 0.879
34 H 0.116 0.884
35 H 0.234 0.766
36 H 0.086 0.914
37 H 0.092 0.908
38 H 0.192 0.808
39 H 0.074 0.926
40 H 0.127 0.873
41 H 0.070 0.930
42 H 0.054 0.946
43 H 0.103 0.897
44 H 0.098 0.902
45 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -6.067 -6.310 -11.164 14.186
hybrid contribution -0.375 0.721 0.521 0.965
sum -6.442 -5.589 -10.643 13.639
Atomic orbital electron populations
1.22754 0.91552 1.05470 1.05362 1.21208 0.93866 0.75859 0.84248
1.93028 1.90547 1.37670 1.96869 1.93000 1.90603 1.80998 1.53838
1.22368 0.95953 1.03345 0.96414 1.21637 0.95916 1.03322 0.97915
1.20350 0.82516 0.79704 0.87190 1.90688 1.55362 1.49373 1.47314
1.46207 1.06568 1.58221 1.25802 1.19310 0.87931 0.96699 0.87440
1.19430 0.95294 0.95528 1.19894 1.23673 0.90081 0.99270 1.00034
1.77169 1.21040 0.93948 1.21626 1.48504 1.05879 1.09977 1.49520
1.22589 0.84502 0.99094 0.95020 1.19917 0.89872 0.81218 0.98571
1.44201 1.04610 1.59101 1.23985 1.19145 0.95449 1.28168 0.96555
0.90894 1.25032 0.97081 0.98215 0.98734 1.69936 1.03187 1.47671
1.33845 0.86213 0.77318 0.78586 0.84168 1.21136 1.21243 1.20368
1.21276 0.91785 0.90694 0.96201 1.22554 0.85146 0.92392 1.00925
0.89067 0.90145 0.89216 0.88083 0.87813 0.87912 0.88368 0.76563
0.91359 0.90823 0.80762 0.92580 0.87314 0.93036 0.94600 0.89707
0.90178 0.90587
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.31 9.38 37.16 0.35 -0.96 16
2 C 0.28 2.73 2.11 -26.73 -0.06 2.67 16
3 F -0.20 -2.34 16.54 2.25 0.04 -2.30 16
4 F -0.20 -2.19 16.54 2.25 0.04 -2.15 16
5 C -0.14 -1.44 4.09 -26.73 -0.11 -1.55 16
6 C -0.15 -1.64 5.46 -27.88 -0.15 -1.79 16
7 C 0.52 7.39 7.83 -10.99 -0.09 7.30 16
8 O -0.55 -9.62 15.98 5.56 0.09 -9.53 16
9 N -0.72 -10.09 5.55 -61.47 -0.34 -10.43 16
10 C 0.21 3.30 5.95 -5.19 -0.03 3.27 16
11 C -0.29 -4.92 5.46 -105.20 -0.57 -5.50 16
12 C 0.06 0.90 11.97 -17.22 -0.21 0.70 16
13 N -0.32 -5.81 12.61 30.70 0.39 -5.43 16
14 N -0.36 -6.79 4.03 -56.93 -0.23 -7.02 16
15 C 0.12 2.34 6.71 -82.17 -0.55 1.79 16
16 C 0.23 5.13 5.11 -4.49 -0.02 5.11 16
17 N -0.60 -13.74 3.01 -172.97 -0.52 -14.26 16
18 C -0.26 -6.71 9.67 -15.06 -0.15 -6.86 16
19 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16
20 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16
21 N -0.90 -24.35 11.07 55.49 0.61 -23.73 16
22 Si 0.91 20.66 29.58 -169.99 -5.03 15.64 16
23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16
26 C 0.13 2.38 6.49 -3.59 -0.02 2.36 16
27 C 0.11 1.91 7.44 -3.88 -0.03 1.88 16
28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.09 0.49 8.14 -51.92 -0.42 0.06 16
31 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16
32 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16
33 H 0.10 1.13 7.80 -51.93 -0.41 0.73 16
34 H 0.10 0.93 7.80 -51.93 -0.41 0.53 16
35 H 0.40 5.09 8.46 -40.82 -0.35 4.75 16
36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16
38 H 0.18 2.18 8.06 -52.48 -0.42 1.75 16
39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
40 H 0.11 2.73 6.46 -51.93 -0.34 2.39 16
41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16
42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
43 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16
44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
LS Contribution 381.12 15.07 5.74 5.74
Total: -1.00 -30.89 381.12 -7.46 -38.35
By element:
Atomic # 1 Polarization: 13.09 SS G_CDS: -6.52 Total: 6.56 kcal
Atomic # 6 Polarization: 10.29 SS G_CDS: -1.73 Total: 8.56 kcal
Atomic # 7 Polarization: -60.78 SS G_CDS: -0.09 Total: -60.87 kcal
Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal
Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.45 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -30.89 -7.46 -38.35 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001128392376.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal
(2) G-P(sol) polarization free energy of solvation -30.889 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.162 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds