Wall clock time and date at job start Sat Apr 11 2020 06:37:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 F 1.39906 * 109.46887 * 2 1
4 4 F 1.39896 * 109.47164 * 240.00627 * 2 1 3
5 5 C 1.52996 * 109.47371 * 119.99597 * 2 1 3
6 6 C 1.53008 * 109.47022 * 180.02562 * 5 2 1
7 7 C 1.50702 * 109.46955 * 180.02562 * 6 5 2
8 8 O 1.21279 * 120.00201 * 359.97438 * 7 6 5
9 9 N 1.34774 * 119.99814 * 180.02562 * 7 6 5
10 10 C 1.46503 * 119.99603 * 180.02562 * 9 7 6
11 11 C 1.50709 * 109.46729 * 179.97438 * 10 9 7
12 12 C 1.40073 * 126.12313 * 259.88192 * 11 10 9
13 13 N 1.31006 * 108.25295 * 179.83823 * 12 11 10
14 14 N 1.39749 * 108.17885 * 0.35335 * 13 12 11
15 15 C 1.34642 * 126.12567 * 79.99778 * 11 10 9
16 16 C 1.51035 * 127.91038 * 359.68657 * 15 11 10
17 17 N 1.47494 * 107.00460 * 169.71753 * 16 15 11
18 18 C 1.36935 * 121.01655 * 222.90206 * 17 16 15
19 19 H 1.08003 * 120.00000 * 155.90950 * 18 17 16
20 20 C 1.38810 * 120.00058 * 335.91821 * 18 17 16
21 21 N 1.31616 * 119.99791 * 344.45450 * 20 18 17
22 22 Si 1.86801 * 120.00237 * 164.45798 * 20 18 17
23 23 H 1.48501 * 109.46987 * 89.99326 * 22 20 18
24 24 H 1.48493 * 109.47222 * 209.99609 * 22 20 18
25 25 H 1.48502 * 109.46853 * 330.00010 * 22 20 18
26 26 C 1.47090 * 117.97260 * 42.92063 * 17 16 15
27 27 C 1.46556 * 127.32195 * 179.45647 * 14 13 12
28 28 H 1.08995 * 109.47460 * 299.99449 * 1 2 3
29 29 H 1.08997 * 109.47629 * 60.00332 * 1 2 3
30 30 H 1.09008 * 109.46544 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.46676 * 60.00714 * 5 2 1
32 32 H 1.08995 * 109.47810 * 300.00350 * 5 2 1
33 33 H 1.09002 * 109.46965 * 60.00704 * 6 5 2
34 34 H 1.08995 * 109.46961 * 300.00683 * 6 5 2
35 35 H 0.96995 * 120.00182 * 359.97438 * 9 7 6
36 36 H 1.08997 * 109.47524 * 60.00106 * 10 9 7
37 37 H 1.08991 * 109.47107 * 299.99056 * 10 9 7
38 38 H 1.08007 * 125.87116 * 0.02562 * 12 11 10
39 39 H 1.08997 * 109.95132 * 289.09278 * 16 15 11
40 40 H 1.09000 * 109.94610 * 50.34741 * 16 15 11
41 41 H 0.97001 * 120.00162 * 180.02562 * 21 20 18
42 42 H 1.09000 * 109.51221 * 56.33544 * 26 17 16
43 43 H 1.09002 * 109.51614 * 176.49615 * 26 17 16
44 44 H 1.09005 * 109.50594 * 41.61326 * 27 14 13
45 45 H 1.08998 * 109.50897 * 281.47318 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3191 0.0000
4 9 1.9963 -0.6594 -1.1423
5 6 2.0400 -0.7211 1.2492
6 6 3.5701 -0.7205 1.2495
7 6 4.0725 -1.4314 2.4797
8 8 3.2845 -1.8926 3.2779
9 7 5.3976 -1.5537 2.6934
10 6 5.8859 -2.2452 3.8890
11 6 7.3930 -2.2445 3.8893
12 6 8.2193 -3.3078 3.5037
13 7 9.4660 -2.9281 3.6377
14 7 9.4728 -1.6164 4.1197
15 6 8.1862 -1.2226 4.2624
16 6 7.7701 0.1435 4.7541
17 7 8.9842 0.8057 5.2668
18 6 8.9604 1.5137 6.4387
19 1 9.8712 1.6582 7.0009
20 6 7.7657 2.0454 6.9042
21 7 6.7301 2.1425 6.0977
22 14 7.6276 2.6232 8.6752
23 1 8.0106 4.0554 8.7599
24 1 6.2280 2.4566 9.1426
25 1 8.5346 1.8169 9.5310
26 6 10.2214 0.6828 4.4807
27 6 10.6426 -0.7899 4.4300
28 1 -0.3634 0.5137 0.8900
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0278 0.0005
31 1 1.6768 -1.7488 1.2492
32 1 1.6767 -0.2074 2.1392
33 1 3.9330 0.3073 1.2497
34 1 3.9337 -1.2340 0.3595
35 1 6.0278 -1.1845 2.0552
36 1 5.5235 -3.2732 3.8877
37 1 5.5219 -1.7326 4.7793
38 1 7.8860 -4.2734 3.1530
39 1 7.3498 0.7226 3.9319
40 1 7.0356 0.0433 5.5532
41 1 5.8953 2.5145 6.4228
42 1 10.0470 1.0466 3.4681
43 1 11.0104 1.2712 4.9491
44 1 11.3995 -0.9257 3.6575
45 1 11.0509 -1.0852 5.3966
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001128392376.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:20
Heat of formation + Delta-G solvation = -66.783406 kcal
Electronic energy + Delta-G solvation = -30105.232880 eV
Core-core repulsion = 25601.602244 eV
Total energy + Delta-G solvation = -4503.630636 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-49.92813 -47.91275 -42.43558 -40.60783 -37.97889 -36.19360 -35.07788 -34.63818
-32.96494 -31.87587 -31.61545 -30.18062 -27.89081 -26.82228 -25.42312 -24.93320
-23.31596 -22.46974 -21.60541 -21.26681 -19.96470 -18.59345 -18.55048 -18.48670
-17.70358 -17.26383 -16.90736 -16.77564 -16.74906 -16.54453 -16.24949 -15.53205
-15.33742 -15.17172 -14.96793 -14.74731 -14.51709 -14.46927 -14.26549 -14.17797
-13.95528 -13.76527 -13.35884 -13.32662 -13.10698 -13.06762 -12.96203 -12.81455
-12.71826 -12.62835 -12.35597 -12.20585 -12.04230 -11.92375 -11.78992 -11.62323
-10.99675 -10.77844 -10.07474 -10.01681 -9.39383 -8.95728 -7.99518 -5.42950
0.92607 1.45017 1.48446 1.55185 1.58852 1.64592 1.68552 2.43883
2.46266 2.90548 3.19832 3.25169 3.42242 3.44162 3.51663 3.60415
3.82054 3.87706 4.11128 4.14016 4.19207 4.22312 4.25904 4.37046
4.46689 4.56148 4.65970 4.67134 4.76213 4.79158 4.87169 4.93471
4.98389 4.99616 5.01834 5.05579 5.23572 5.36115 5.48123 5.57858
5.75567 6.08460 6.19708 6.60064 6.79907 6.98524 7.26576 7.64761
8.15903 9.09859
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.010035 B = 0.003091 C = 0.002601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.646696 B = 9057.618598 C =10760.467024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.281 3.719
3 F -0.214 7.214
4 F -0.210 7.210
5 C -0.141 4.141
6 C -0.142 4.142
7 C 0.515 3.485
8 O -0.583 6.583
9 N -0.713 5.713
10 C 0.216 3.784
11 C -0.275 4.275
12 C 0.067 3.933
13 N -0.327 5.327
14 N -0.367 5.367
15 C 0.095 3.905
16 C 0.250 3.750
17 N -0.616 5.616
18 C -0.269 4.269
19 H 0.079 0.921
20 C -0.042 4.042
21 N -0.931 5.931
22 Si 0.965 3.035
23 H -0.281 1.281
24 H -0.295 1.295
25 H -0.272 1.272
26 C 0.128 3.872
27 C 0.117 3.883
28 H 0.098 0.902
29 H 0.087 0.913
30 H 0.105 0.895
31 H 0.109 0.891
32 H 0.096 0.904
33 H 0.102 0.898
34 H 0.118 0.882
35 H 0.408 0.592
36 H 0.085 0.915
37 H 0.043 0.957
38 H 0.215 0.785
39 H 0.035 0.965
40 H 0.072 0.928
41 H 0.253 0.747
42 H 0.040 0.960
43 H 0.099 0.901
44 H 0.112 0.888
45 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.224 -7.095 -12.688 15.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C 0.246 3.754
3 F -0.196 7.196
4 F -0.191 7.191
5 C -0.179 4.179
6 C -0.182 4.182
7 C 0.303 3.697
8 O -0.464 6.464
9 N -0.363 5.363
10 C 0.092 3.908
11 C -0.287 4.287
12 C -0.119 4.119
13 N -0.147 5.147
14 N -0.149 5.149
15 C -0.037 4.037
16 C 0.123 3.877
17 N -0.339 5.339
18 C -0.398 4.398
19 H 0.097 0.903
20 C -0.238 4.238
21 N -0.576 5.576
22 Si 0.793 3.207
23 H -0.208 1.208
24 H -0.222 1.222
25 H -0.197 1.197
26 C 0.001 3.999
27 C -0.006 4.006
28 H 0.117 0.883
29 H 0.105 0.895
30 H 0.124 0.876
31 H 0.127 0.873
32 H 0.115 0.885
33 H 0.121 0.879
34 H 0.137 0.863
35 H 0.243 0.757
36 H 0.103 0.897
37 H 0.062 0.938
38 H 0.232 0.768
39 H 0.053 0.947
40 H 0.090 0.910
41 H 0.062 0.938
42 H 0.058 0.942
43 H 0.117 0.883
44 H 0.130 0.870
45 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -5.474 -7.578 -12.180 15.354
hybrid contribution -0.493 1.068 0.791 1.417
sum -5.967 -6.511 -11.389 14.412
Atomic orbital electron populations
1.22785 0.89122 1.06804 1.06120 1.21449 0.95520 0.74925 0.83555
1.93001 1.90910 1.38764 1.96893 1.92985 1.90874 1.81063 1.54157
1.22363 0.95139 1.03865 0.96538 1.21644 0.96727 1.02947 0.96859
1.20887 0.82077 0.79107 0.87670 1.90670 1.56090 1.50904 1.48692
1.46131 1.06910 1.57979 1.25310 1.19162 0.87277 0.97319 0.87053
1.19556 0.95650 0.95154 1.18376 1.24258 0.88938 1.00187 0.98551
1.77163 1.22121 0.93459 1.21963 1.48688 1.05815 1.10516 1.49850
1.22227 0.85726 0.98560 0.97159 1.19345 0.89149 0.82694 0.96517
1.44436 1.06106 1.59144 1.24259 1.19481 0.95538 1.27273 0.97530
0.90349 1.25710 0.97090 0.99193 1.01779 1.70084 1.03323 1.49079
1.35077 0.85311 0.76620 0.78224 0.80505 1.20753 1.22176 1.19708
1.21437 0.90286 0.92359 0.95811 1.22534 0.85179 0.90686 1.02153
0.88292 0.89453 0.87634 0.87279 0.88515 0.87928 0.86344 0.75651
0.89662 0.93842 0.76807 0.94732 0.90977 0.93817 0.94198 0.88260
0.87006 0.90544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.27 9.38 71.98 0.68 -1.60 16
2 C 0.28 5.09 2.11 30.59 0.06 5.16 16
3 F -0.21 -4.89 16.54 44.97 0.74 -4.15 16
4 F -0.21 -4.22 16.54 44.97 0.74 -3.48 16
5 C -0.14 -2.73 4.09 30.60 0.13 -2.60 16
6 C -0.14 -3.04 5.46 29.85 0.16 -2.87 16
7 C 0.51 14.63 7.83 87.66 0.69 15.32 16
8 O -0.58 -20.54 15.98 -3.03 -0.05 -20.59 16
9 N -0.71 -19.85 5.55 -466.78 -2.59 -22.44 16
10 C 0.22 6.76 5.95 85.64 0.51 7.27 16
11 C -0.28 -9.10 5.46 -20.24 -0.11 -9.21 16
12 C 0.07 1.97 11.97 85.26 1.02 2.99 16
13 N -0.33 -11.14 12.61 -56.79 -0.72 -11.86 16
14 N -0.37 -13.40 4.03 -334.04 -1.35 -14.75 16
15 C 0.09 3.69 6.71 41.30 0.28 3.96 16
16 C 0.25 11.49 5.11 85.55 0.44 11.93 16
17 N -0.62 -28.71 3.01 -701.16 -2.11 -30.82 16
18 C -0.27 -13.77 9.67 84.03 0.81 -12.96 16
19 H 0.08 3.84 7.88 -2.91 -0.02 3.81 16
20 C -0.04 -2.20 5.00 84.86 0.42 -1.77 16
21 N -0.93 -52.04 11.07 21.65 0.24 -51.80 16
22 Si 0.97 43.17 29.58 68.60 2.03 45.20 16
23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16
24 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16
25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
26 C 0.13 4.61 6.49 86.35 0.56 5.17 16
27 C 0.12 3.73 7.44 86.45 0.64 4.38 16
28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
29 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16
30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16
31 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16
32 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16
33 H 0.10 2.23 7.80 -2.39 -0.02 2.21 16
34 H 0.12 2.06 7.80 -2.39 -0.02 2.04 16
35 H 0.41 10.14 8.46 -92.71 -0.78 9.36 16
36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.22 4.42 8.06 -2.91 -0.02 4.39 16
39 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16
40 H 0.07 3.83 6.46 -2.39 -0.02 3.81 16
41 H 0.25 13.91 8.31 -92.71 -0.77 13.13 16
42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
43 H 0.10 3.24 7.94 -2.39 -0.02 3.22 16
44 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16
45 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16
Total: -1.00 -67.37 381.12 3.47 -63.90
By element:
Atomic # 1 Polarization: 25.38 SS G_CDS: 0.23 Total: 25.61 kcal
Atomic # 6 Polarization: 18.88 SS G_CDS: 6.29 Total: 25.17 kcal
Atomic # 7 Polarization: -125.14 SS G_CDS: -6.52 Total: -131.67 kcal
Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal
Atomic # 9 Polarization: -9.11 SS G_CDS: 1.49 Total: -7.62 kcal
Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal
Total: -67.37 3.47 -63.90 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001128392376.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.882 kcal
(2) G-P(sol) polarization free energy of solvation -67.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds