Wall clock time and date at job start Sat Apr 11 2020 06:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.45859 * 2 1
4 4 N 1.46505 * 109.47233 * 60.02792 * 3 2 1
5 5 C 1.34769 * 120.00621 * 179.97438 * 4 3 2
6 6 O 1.21579 * 119.99718 * 359.97438 * 5 4 3
7 7 C 1.47705 * 120.00525 * 179.97438 * 5 4 3
8 8 C 1.41501 * 126.51917 * 179.71119 * 7 5 4
9 9 C 1.35368 * 105.50183 * 179.90737 * 8 7 5
10 10 N 1.35026 * 107.22891 * 0.35520 * 9 8 7
11 11 C 1.46499 * 124.88497 * 179.76482 * 10 9 8
12 12 F 1.39900 * 109.47221 * 209.97845 * 11 10 9
13 13 F 1.39901 * 109.47105 * 329.97720 * 11 10 9
14 14 N 1.28474 * 110.23271 * 359.76453 * 10 9 8
15 15 C 1.53045 * 109.44520 * 119.96827 * 2 1 3
16 16 C 1.53191 * 109.31249 * 58.65088 * 15 2 1
17 17 N 1.46918 * 108.77554 * 54.63674 * 16 15 2
18 18 C 1.36936 * 120.63546 * 126.41727 * 17 16 15
19 19 H 1.08007 * 119.99305 * 332.60359 * 18 17 16
20 20 C 1.38806 * 120.00594 * 152.60143 * 18 17 16
21 21 N 1.31626 * 120.00074 * 159.34068 * 20 18 17
22 22 Si 1.86797 * 119.99965 * 339.34294 * 20 18 17
23 23 H 1.48507 * 109.46988 * 92.93967 * 22 20 18
24 24 H 1.48499 * 109.46999 * 212.93635 * 22 20 18
25 25 H 1.48494 * 109.47236 * 332.94025 * 22 20 18
26 26 C 1.46932 * 118.73798 * 306.38420 * 17 16 15
27 27 C 1.53044 * 109.45853 * 240.02846 * 2 1 3
28 28 H 1.08998 * 109.46654 * 60.00241 * 1 2 3
29 29 H 1.09001 * 109.46675 * 179.97438 * 1 2 3
30 30 H 1.08991 * 109.47300 * 299.99835 * 1 2 3
31 31 H 1.09006 * 109.46846 * 180.02562 * 3 2 1
32 32 H 1.08995 * 109.47453 * 300.02611 * 3 2 1
33 33 H 0.97006 * 119.99617 * 359.97438 * 4 3 2
34 34 H 1.08005 * 127.24705 * 0.02562 * 8 7 5
35 35 H 1.07996 * 126.38257 * 180.09387 * 9 8 7
36 36 H 1.09002 * 109.47201 * 89.97875 * 11 10 9
37 37 H 1.09005 * 109.49291 * 178.60255 * 15 2 1
38 38 H 1.09002 * 109.49470 * 298.69391 * 15 2 1
39 39 H 1.08995 * 109.58372 * 294.84257 * 16 15 2
40 40 H 1.09001 * 109.58133 * 174.42123 * 16 15 2
41 41 H 0.96993 * 119.99939 * 179.97438 * 21 20 18
42 42 H 1.08996 * 109.58882 * 293.82435 * 26 17 16
43 43 H 1.09002 * 109.70447 * 173.46792 * 26 17 16
44 44 H 1.08997 * 109.49819 * 61.31565 * 27 2 1
45 45 H 1.09006 * 109.49055 * 181.40941 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0397 1.4426 0.0000
4 7 1.5518 2.1329 1.1965
5 6 1.8775 3.4231 1.4102
6 8 2.5768 4.0140 0.6102
7 6 1.3851 4.1192 2.6163
8 6 1.6454 5.4621 2.9787
9 6 0.9915 5.6544 4.1483
10 7 0.3858 4.4896 4.4640
11 6 -0.4267 4.2657 5.6623
12 9 -0.3302 2.9241 6.0472
13 9 0.0365 5.0828 6.6992
14 7 0.6244 3.6060 3.5625
15 6 2.0395 -0.7209 1.2502
16 6 1.4990 -2.1542 1.2642
17 7 1.8621 -2.8089 0.0001
18 6 2.5253 -4.0069 0.0002
19 1 3.1631 -4.2710 0.8309
20 6 2.3780 -4.8819 -1.0673
21 7 3.2826 -5.8131 -1.2846
22 14 0.8961 -4.7379 -2.1953
23 1 1.2379 -3.8737 -3.3537
24 1 0.5109 -6.0873 -2.6812
25 1 -0.2384 -4.1383 -1.4481
26 6 1.4993 -2.1542 -1.2642
27 6 2.0399 -0.7209 -1.2501
28 1 -0.3632 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 3.1298 1.4428 -0.0005
32 1 1.6759 1.9565 -0.8897
33 1 0.9942 1.6614 1.8350
34 1 2.2391 6.1825 2.4355
35 1 0.9633 6.5678 4.7238
36 1 -1.4673 4.5077 5.4462
37 1 3.1293 -0.7431 1.2386
38 1 1.6954 -0.1934 2.1399
39 1 0.4141 -2.1345 1.3672
40 1 1.9374 -2.7018 2.0985
41 1 3.1794 -6.4248 -2.0303
42 1 0.4144 -2.1346 -1.3675
43 1 1.9361 -2.7011 -2.0999
44 1 1.6961 -0.1935 -2.1398
45 1 3.1296 -0.7431 -1.2380
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001278611316.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:48
Heat of formation + Delta-G solvation = -20.085272 kcal
Electronic energy + Delta-G solvation = -30225.828456 eV
Core-core repulsion = 25724.222803 eV
Total energy + Delta-G solvation = -4501.605653 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-50.02576 -48.12190 -43.09851 -39.89157 -38.56178 -35.27317 -33.53958 -33.02054
-31.43036 -31.11403 -30.37875 -27.86799 -27.26676 -26.43068 -24.12494 -23.32363
-22.48093 -22.15046 -20.99120 -20.25752 -19.29860 -18.90357 -18.26826 -17.98461
-17.52397 -16.44464 -16.07895 -15.96065 -15.36559 -15.07122 -14.92079 -14.86840
-14.49775 -14.31130 -14.29333 -14.01188 -13.89407 -13.82172 -13.52711 -13.42416
-13.07539 -12.88342 -12.45485 -12.13996 -11.98404 -11.70806 -11.51328 -11.48083
-10.86297 -10.74991 -10.61740 -10.44435 -10.34176 -10.02555 -9.95378 -9.78437
-9.72624 -9.62924 -9.38259 -9.05267 -8.58482 -6.92658 -5.92324 -3.27463
0.98424 1.24276 1.65162 2.80192 3.03656 3.19610 3.29706 3.33644
3.49708 3.52324 3.73006 4.15537 4.28471 4.55197 4.71904 4.91380
4.97360 5.03146 5.11982 5.13313 5.27283 5.42517 5.60394 5.71901
5.75373 5.84155 5.91816 5.95787 5.96359 5.97466 6.10354 6.21672
6.29072 6.34474 6.43695 6.47041 6.55415 6.70291 6.71590 6.74489
7.01475 7.14255 7.49933 7.99729 8.07761 8.35887 8.97638 9.75268
10.13597 11.23890
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.019076 B = 0.002461 C = 0.002291
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1467.479348 B =11375.641554 C =12220.726626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.065 4.065
3 C 0.129 3.871
4 N -0.707 5.707
5 C 0.599 3.401
6 O -0.532 6.532
7 C 0.009 3.991
8 C -0.167 4.167
9 C -0.004 4.004
10 N -0.352 5.352
11 C 0.504 3.496
12 F -0.164 7.164
13 F -0.174 7.174
14 N -0.245 5.245
15 C -0.124 4.124
16 C 0.149 3.851
17 N -0.605 5.605
18 C -0.258 4.258
19 H 0.085 0.915
20 C 0.022 3.978
21 N -0.910 5.910
22 Si 0.883 3.117
23 H -0.289 1.289
24 H -0.305 1.305
25 H -0.271 1.271
26 C 0.127 3.873
27 C -0.121 4.121
28 H 0.051 0.949
29 H 0.070 0.930
30 H 0.048 0.952
31 H 0.071 0.929
32 H 0.069 0.931
33 H 0.407 0.593
34 H 0.171 0.829
35 H 0.191 0.809
36 H 0.165 0.835
37 H 0.065 0.935
38 H 0.052 0.948
39 H 0.025 0.975
40 H 0.061 0.939
41 H 0.262 0.738
42 H 0.027 0.973
43 H 0.072 0.928
44 H 0.056 0.944
45 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.877 25.675 12.900 30.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.065 4.065
3 C 0.006 3.994
4 N -0.358 5.358
5 C 0.383 3.617
6 O -0.406 6.406
7 C -0.155 4.155
8 C -0.195 4.195
9 C -0.143 4.143
10 N -0.150 5.150
11 C 0.372 3.628
12 F -0.145 7.145
13 F -0.156 7.156
14 N -0.079 5.079
15 C -0.164 4.164
16 C 0.023 3.977
17 N -0.329 5.329
18 C -0.386 4.386
19 H 0.102 0.898
20 C -0.177 4.177
21 N -0.553 5.553
22 Si 0.714 3.286
23 H -0.216 1.216
24 H -0.233 1.233
25 H -0.196 1.196
26 C 0.001 3.999
27 C -0.161 4.161
28 H 0.070 0.930
29 H 0.089 0.911
30 H 0.067 0.933
31 H 0.089 0.911
32 H 0.087 0.913
33 H 0.244 0.756
34 H 0.189 0.811
35 H 0.208 0.792
36 H 0.181 0.819
37 H 0.084 0.916
38 H 0.070 0.930
39 H 0.042 0.958
40 H 0.080 0.920
41 H 0.072 0.928
42 H 0.045 0.955
43 H 0.090 0.910
44 H 0.075 0.925
45 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -9.935 24.895 12.737 29.676
hybrid contribution -0.548 0.504 -0.358 0.826
sum -10.482 25.399 12.379 30.137
Atomic orbital electron populations
1.21975 0.94672 1.02812 1.00795 1.20703 0.95804 0.92319 0.97709
1.21610 0.99433 0.91951 0.86437 1.45978 1.52718 1.11148 1.26004
1.16812 0.80118 0.81649 0.83171 1.90816 1.37954 1.66466 1.45406
1.22275 1.01723 0.94836 0.96620 1.21925 1.04220 0.96421 0.96924
1.22888 0.99853 0.92071 0.99519 1.46754 1.40505 1.09499 1.18195
1.21515 0.93737 0.73958 0.73631 1.93182 1.96874 1.33961 1.90519
1.93153 1.91121 1.72716 1.58576 1.73601 1.17125 1.18026 0.99119
1.22076 1.01276 0.97810 0.95190 1.20939 0.96505 0.90884 0.89401
1.44331 1.67438 1.21695 0.99392 1.18927 1.20054 0.92230 1.07394
0.89789 1.25278 0.97945 0.96211 0.98228 1.69843 1.33445 1.21280
1.30708 0.86943 0.85545 0.75528 0.80617 1.21635 1.23294 1.19608
1.21346 0.96901 0.91415 0.90232 1.22009 1.01460 0.97503 0.95080
0.92971 0.91076 0.93339 0.91056 0.91310 0.75575 0.81129 0.79236
0.81862 0.91637 0.92954 0.95750 0.92047 0.92822 0.95493 0.91017
0.92518 0.91327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 7.54 37.16 0.28 -1.70 16
2 C -0.06 -0.95 0.53 -154.46 -0.08 -1.03 16
3 C 0.13 1.75 4.56 -4.04 -0.02 1.73 16
4 N -0.71 -8.98 4.94 -61.29 -0.30 -9.28 16
5 C 0.60 8.21 7.82 -12.40 -0.10 8.11 16
6 O -0.53 -8.74 16.93 5.30 0.09 -8.65 16
7 C 0.01 0.11 7.13 -82.77 -0.59 -0.49 16
8 C -0.17 -1.52 10.81 -39.36 -0.43 -1.94 16
9 C 0.00 -0.02 10.98 -17.17 -0.19 -0.21 16
10 N -0.35 -2.74 3.68 -66.62 -0.24 -2.98 16
11 C 0.50 2.39 6.56 59.85 0.39 2.78 16
12 F -0.16 -1.26 17.26 2.25 0.04 -1.22 16
13 F -0.17 -0.86 16.96 2.25 0.04 -0.82 16
14 N -0.25 -2.62 11.41 33.42 0.38 -2.24 16
15 C -0.12 -1.97 4.75 -26.61 -0.13 -2.09 16
16 C 0.15 2.84 6.05 -3.72 -0.02 2.82 16
17 N -0.60 -14.10 2.77 -172.33 -0.48 -14.57 16
18 C -0.26 -7.18 10.03 -15.06 -0.15 -7.34 16
19 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16
20 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16
21 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16
22 Si 0.88 22.38 24.35 -169.99 -4.14 18.25 16
23 H -0.29 -7.06 6.62 56.52 0.37 -6.68 16
24 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16
25 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16
26 C 0.13 2.69 3.73 -3.71 -0.01 2.68 16
27 C -0.12 -2.07 4.91 -26.61 -0.13 -2.20 16
28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
29 H 0.07 1.11 4.98 -51.93 -0.26 0.85 16
30 H 0.05 0.58 6.86 -51.93 -0.36 0.22 16
31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.41 4.81 5.88 -40.82 -0.24 4.57 16
34 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16
35 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16
36 H 0.16 0.04 8.14 -51.93 -0.42 -0.38 16
37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.05 0.71 6.82 -51.93 -0.35 0.36 16
39 H 0.02 0.45 6.69 -51.93 -0.35 0.10 16
40 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16
41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
42 H 0.03 0.57 5.62 -51.93 -0.29 0.27 16
43 H 0.07 1.70 4.50 -51.93 -0.23 1.47 16
44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16
LS Contribution 362.01 15.07 5.46 5.46
Total: -1.00 -34.62 362.01 -5.56 -40.18
By element:
Atomic # 1 Polarization: 7.38 SS G_CDS: -5.91 Total: 1.47 kcal
Atomic # 6 Polarization: 2.93 SS G_CDS: -1.26 Total: 1.67 kcal
Atomic # 7 Polarization: -56.46 SS G_CDS: 0.13 Total: -56.33 kcal
Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal
Atomic # 9 Polarization: -2.11 SS G_CDS: 0.08 Total: -2.04 kcal
Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.25 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -34.62 -5.56 -40.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278611316.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.094 kcal
(2) G-P(sol) polarization free energy of solvation -34.619 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds