Wall clock time and date at job start Sat Apr 11 2020 06:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.45859 * 2 1
4 4 N 1.46505 * 109.47233 * 60.02792 * 3 2 1
5 5 C 1.34769 * 120.00621 * 179.97438 * 4 3 2
6 6 O 1.21579 * 119.99718 * 359.97438 * 5 4 3
7 7 C 1.47705 * 120.00525 * 179.97438 * 5 4 3
8 8 C 1.41501 * 126.51917 * 179.71119 * 7 5 4
9 9 C 1.35368 * 105.50183 * 179.90737 * 8 7 5
10 10 N 1.35026 * 107.22891 * 0.35520 * 9 8 7
11 11 C 1.46499 * 124.88497 * 179.76482 * 10 9 8
12 12 F 1.39900 * 109.47221 * 209.97845 * 11 10 9
13 13 F 1.39901 * 109.47105 * 329.97720 * 11 10 9
14 14 N 1.28474 * 110.23271 * 359.76453 * 10 9 8
15 15 C 1.53045 * 109.44520 * 119.96827 * 2 1 3
16 16 C 1.53191 * 109.31249 * 58.65088 * 15 2 1
17 17 N 1.46918 * 108.77554 * 54.63674 * 16 15 2
18 18 C 1.36936 * 120.63546 * 126.41727 * 17 16 15
19 19 H 1.08007 * 119.99305 * 332.60359 * 18 17 16
20 20 C 1.38806 * 120.00594 * 152.60143 * 18 17 16
21 21 N 1.31626 * 120.00074 * 159.34068 * 20 18 17
22 22 Si 1.86797 * 119.99965 * 339.34294 * 20 18 17
23 23 H 1.48507 * 109.46988 * 92.93967 * 22 20 18
24 24 H 1.48499 * 109.46999 * 212.93635 * 22 20 18
25 25 H 1.48494 * 109.47236 * 332.94025 * 22 20 18
26 26 C 1.46932 * 118.73798 * 306.38420 * 17 16 15
27 27 C 1.53044 * 109.45853 * 240.02846 * 2 1 3
28 28 H 1.08998 * 109.46654 * 60.00241 * 1 2 3
29 29 H 1.09001 * 109.46675 * 179.97438 * 1 2 3
30 30 H 1.08991 * 109.47300 * 299.99835 * 1 2 3
31 31 H 1.09006 * 109.46846 * 180.02562 * 3 2 1
32 32 H 1.08995 * 109.47453 * 300.02611 * 3 2 1
33 33 H 0.97006 * 119.99617 * 359.97438 * 4 3 2
34 34 H 1.08005 * 127.24705 * 0.02562 * 8 7 5
35 35 H 1.07996 * 126.38257 * 180.09387 * 9 8 7
36 36 H 1.09002 * 109.47201 * 89.97875 * 11 10 9
37 37 H 1.09005 * 109.49291 * 178.60255 * 15 2 1
38 38 H 1.09002 * 109.49470 * 298.69391 * 15 2 1
39 39 H 1.08995 * 109.58372 * 294.84257 * 16 15 2
40 40 H 1.09001 * 109.58133 * 174.42123 * 16 15 2
41 41 H 0.96993 * 119.99939 * 179.97438 * 21 20 18
42 42 H 1.08996 * 109.58882 * 293.82435 * 26 17 16
43 43 H 1.09002 * 109.70447 * 173.46792 * 26 17 16
44 44 H 1.08997 * 109.49819 * 61.31565 * 27 2 1
45 45 H 1.09006 * 109.49055 * 181.40941 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0397 1.4426 0.0000
4 7 1.5518 2.1329 1.1965
5 6 1.8775 3.4231 1.4102
6 8 2.5768 4.0140 0.6102
7 6 1.3851 4.1192 2.6163
8 6 1.6454 5.4621 2.9787
9 6 0.9915 5.6544 4.1483
10 7 0.3858 4.4896 4.4640
11 6 -0.4267 4.2657 5.6623
12 9 -0.3302 2.9241 6.0472
13 9 0.0365 5.0828 6.6992
14 7 0.6244 3.6060 3.5625
15 6 2.0395 -0.7209 1.2502
16 6 1.4990 -2.1542 1.2642
17 7 1.8621 -2.8089 0.0001
18 6 2.5253 -4.0069 0.0002
19 1 3.1631 -4.2710 0.8309
20 6 2.3780 -4.8819 -1.0673
21 7 3.2826 -5.8131 -1.2846
22 14 0.8961 -4.7379 -2.1953
23 1 1.2379 -3.8737 -3.3537
24 1 0.5109 -6.0873 -2.6812
25 1 -0.2384 -4.1383 -1.4481
26 6 1.4993 -2.1542 -1.2642
27 6 2.0399 -0.7209 -1.2501
28 1 -0.3632 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 3.1298 1.4428 -0.0005
32 1 1.6759 1.9565 -0.8897
33 1 0.9942 1.6614 1.8350
34 1 2.2391 6.1825 2.4355
35 1 0.9633 6.5678 4.7238
36 1 -1.4673 4.5077 5.4462
37 1 3.1293 -0.7431 1.2386
38 1 1.6954 -0.1934 2.1399
39 1 0.4141 -2.1345 1.3672
40 1 1.9374 -2.7018 2.0985
41 1 3.1794 -6.4248 -2.0303
42 1 0.4144 -2.1346 -1.3675
43 1 1.9361 -2.7011 -2.0999
44 1 1.6961 -0.1935 -2.1398
45 1 3.1296 -0.7431 -1.2380
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001278611316.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:37:48
Heat of formation + Delta-G solvation = -44.942374 kcal
Electronic energy + Delta-G solvation = -30226.906341 eV
Core-core repulsion = 25724.222803 eV
Total energy + Delta-G solvation = -4502.683538 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.161 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-50.41567 -48.53324 -43.73481 -41.07276 -39.85549 -36.76088 -34.75476 -33.99201
-33.12953 -31.97211 -31.84476 -29.10017 -28.38097 -27.32526 -25.66790 -24.61948
-23.71687 -22.73391 -22.57545 -21.18941 -19.86792 -19.67965 -19.27120 -18.77167
-18.31273 -18.08533 -17.31817 -16.85513 -16.82987 -16.10008 -15.95010 -15.69939
-15.47867 -15.36693 -15.28307 -15.12318 -14.90737 -14.83501 -14.59504 -14.43256
-14.19856 -14.01416 -13.91719 -13.59177 -13.29097 -13.15646 -12.87417 -12.41768
-12.26142 -12.20230 -12.17275 -12.10307 -11.71378 -11.54038 -11.40008 -11.16879
-11.10600 -10.66814 -10.65037 -10.32872 -10.10022 -8.88098 -8.15251 -5.46108
0.27059 0.73721 1.02787 1.31171 1.41918 1.51468 2.07766 2.26577
2.43185 2.54879 2.79558 3.07310 3.37884 3.50460 3.54353 3.71136
3.74721 3.78532 3.84649 4.07252 4.29980 4.37939 4.50702 4.55313
4.56133 4.62335 4.71856 4.74355 4.75175 4.82396 4.93819 5.03150
5.03994 5.12197 5.18378 5.24315 5.28833 5.34695 5.39580 5.45451
5.60673 5.88773 6.14206 6.32082 6.64799 6.94716 7.07806 7.65485
8.05772 9.05019
Molecular weight = 342.16amu
Principal moments of inertia in cm(-1)
A = 0.019076 B = 0.002461 C = 0.002291
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1467.479348 B =11375.641554 C =12220.726626
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.056 4.056
3 C 0.139 3.861
4 N -0.700 5.700
5 C 0.599 3.401
6 O -0.567 6.567
7 C -0.018 4.018
8 C -0.188 4.188
9 C 0.020 3.980
10 N -0.351 5.351
11 C 0.499 3.501
12 F -0.184 7.184
13 F -0.174 7.174
14 N -0.261 5.261
15 C -0.114 4.114
16 C 0.144 3.856
17 N -0.619 5.619
18 C -0.247 4.247
19 H 0.047 0.953
20 C -0.038 4.038
21 N -0.960 5.960
22 Si 0.949 3.051
23 H -0.274 1.274
24 H -0.314 1.314
25 H -0.257 1.257
26 C 0.122 3.878
27 C -0.116 4.116
28 H 0.066 0.934
29 H 0.054 0.946
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.076 0.924
33 H 0.413 0.587
34 H 0.176 0.824
35 H 0.231 0.769
36 H 0.217 0.783
37 H 0.046 0.954
38 H 0.079 0.921
39 H 0.044 0.956
40 H 0.048 0.952
41 H 0.261 0.739
42 H 0.041 0.959
43 H 0.045 0.955
44 H 0.084 0.916
45 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.625 28.925 13.869 34.473
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.056 4.056
3 C 0.015 3.985
4 N -0.352 5.352
5 C 0.384 3.616
6 O -0.444 6.444
7 C -0.180 4.180
8 C -0.215 4.215
9 C -0.120 4.120
10 N -0.149 5.149
11 C 0.368 3.632
12 F -0.165 7.165
13 F -0.156 7.156
14 N -0.096 5.096
15 C -0.153 4.153
16 C 0.020 3.980
17 N -0.343 5.343
18 C -0.377 4.377
19 H 0.065 0.935
20 C -0.233 4.233
21 N -0.607 5.607
22 Si 0.778 3.222
23 H -0.201 1.201
24 H -0.243 1.243
25 H -0.181 1.181
26 C -0.003 4.003
27 C -0.155 4.155
28 H 0.085 0.915
29 H 0.073 0.927
30 H 0.087 0.913
31 H 0.077 0.923
32 H 0.094 0.906
33 H 0.251 0.749
34 H 0.193 0.807
35 H 0.248 0.752
36 H 0.233 0.767
37 H 0.065 0.935
38 H 0.098 0.902
39 H 0.061 0.939
40 H 0.067 0.933
41 H 0.069 0.931
42 H 0.059 0.941
43 H 0.063 0.937
44 H 0.102 0.898
45 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -12.719 28.182 13.740 33.835
hybrid contribution 0.352 -0.435 -0.479 0.737
sum -12.367 27.747 13.261 33.146
Atomic orbital electron populations
1.21931 0.93044 1.02208 1.02638 1.20577 0.96926 0.92431 0.95677
1.21391 0.98687 0.91155 0.87245 1.45874 1.52552 1.11023 1.25720
1.17100 0.79422 0.81583 0.83498 1.90788 1.39580 1.67215 1.46858
1.22070 1.03419 0.95924 0.96621 1.22140 1.05431 0.95719 0.98256
1.23451 0.97402 0.92735 0.98459 1.47155 1.40035 1.09405 1.18269
1.22411 0.95200 0.72962 0.72586 1.93143 1.96976 1.35713 1.90673
1.93156 1.91325 1.72536 1.58538 1.73518 1.17425 1.19004 0.99625
1.21946 1.00068 0.96051 0.97244 1.21111 0.97565 0.92181 0.87170
1.44452 1.67460 1.20705 1.01724 1.18865 1.19003 0.93942 1.05852
0.93472 1.25930 1.00471 0.96350 1.00528 1.69983 1.35506 1.23049
1.32160 0.85866 0.82016 0.75134 0.79171 1.20093 1.24299 1.18104
1.21405 0.97493 0.93161 0.88223 1.21910 1.00474 0.95454 0.97678
0.91504 0.92723 0.91319 0.92315 0.90600 0.74884 0.80668 0.75220
0.76701 0.93466 0.90218 0.93859 0.93334 0.93052 0.94119 0.93676
0.89786 0.92883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.35 7.54 71.98 0.54 -2.81 16
2 C -0.06 -1.51 0.53 -52.15 -0.03 -1.54 16
3 C 0.14 3.52 4.56 86.38 0.39 3.91 16
4 N -0.70 -16.52 4.94 -466.10 -2.30 -18.83 16
5 C 0.60 15.80 7.82 86.75 0.68 16.48 16
6 O -0.57 -18.45 16.93 -3.97 -0.07 -18.51 16
7 C -0.02 -0.40 7.13 42.46 0.30 -0.10 16
8 C -0.19 -3.05 10.81 22.41 0.24 -2.81 16
9 C 0.02 0.19 10.98 83.54 0.92 1.11 16
10 N -0.35 -4.35 3.68 -364.70 -1.34 -5.69 16
11 C 0.50 2.95 6.56 127.77 0.84 3.79 16
12 F -0.18 -2.37 17.26 44.97 0.78 -1.59 16
13 F -0.17 -1.10 16.96 44.97 0.76 -0.34 16
14 N -0.26 -4.98 11.41 -48.18 -0.55 -5.53 16
15 C -0.11 -3.46 4.75 30.67 0.15 -3.31 16
16 C 0.14 5.42 6.05 86.36 0.52 5.94 16
17 N -0.62 -28.84 2.77 -699.12 -1.94 -30.77 16
18 C -0.25 -14.20 10.03 84.03 0.84 -13.35 16
19 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16
20 C -0.04 -2.28 5.23 84.86 0.44 -1.84 16
21 N -0.96 -61.49 13.97 21.65 0.30 -61.19 16
22 Si 0.95 46.86 24.35 68.60 1.67 48.53 16
23 H -0.27 -12.77 6.62 99.48 0.66 -12.12 16
24 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16
25 H -0.26 -11.92 6.63 99.48 0.66 -11.26 16
26 C 0.12 5.03 3.73 86.36 0.32 5.35 16
27 C -0.12 -3.77 4.91 30.67 0.15 -3.62 16
28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
29 H 0.05 1.51 4.98 -2.39 -0.01 1.49 16
30 H 0.07 1.36 6.86 -2.39 -0.02 1.34 16
31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16
32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.41 8.73 5.88 -92.70 -0.55 8.19 16
34 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16
35 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16
36 H 0.22 -0.94 8.14 -2.39 -0.02 -0.96 16
37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16
38 H 0.08 1.99 6.82 -2.39 -0.02 1.98 16
39 H 0.04 1.50 6.69 -2.39 -0.02 1.48 16
40 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16
41 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16
42 H 0.04 1.59 5.62 -2.39 -0.01 1.58 16
43 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16
44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
45 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16
Total: -1.00 -78.89 362.01 4.03 -74.86
By element:
Atomic # 1 Polarization: 11.48 SS G_CDS: 0.40 Total: 11.88 kcal
Atomic # 6 Polarization: 0.88 SS G_CDS: 6.32 Total: 7.20 kcal
Atomic # 7 Polarization: -116.19 SS G_CDS: -5.83 Total: -122.01 kcal
Atomic # 8 Polarization: -18.45 SS G_CDS: -0.07 Total: -18.51 kcal
Atomic # 9 Polarization: -3.47 SS G_CDS: 1.54 Total: -1.94 kcal
Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal
Total: -78.89 4.03 -74.86 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001278611316.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.921 kcal
(2) G-P(sol) polarization free energy of solvation -78.892 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.971 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds