Wall clock time and date at job start Sat Apr 11 2020 06:38:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17408 * 1
3 3 C 1.47191 * 179.97438 * 2 1
4 4 C 1.53005 * 109.47205 * 110.16564 * 3 2 1
5 5 O 1.42897 * 109.47276 * 180.02562 * 4 3 2
6 6 C 1.35711 * 117.00224 * 180.02562 * 5 4 3
7 7 C 1.38997 * 119.91565 * 180.02562 * 6 5 4
8 8 C 1.37700 * 120.08859 * 180.02562 * 7 6 5
9 9 C 1.39728 * 119.91377 * 359.97233 * 8 7 6
10 10 C 1.47596 * 120.09003 * 180.02562 * 9 8 7
11 11 O 1.21584 * 120.00171 * 359.97438 * 10 9 8
12 12 N 1.34778 * 120.00090 * 179.72464 * 10 9 8
13 13 C 1.46500 * 119.99960 * 179.97438 * 12 10 9
14 14 C 1.53007 * 109.47233 * 180.31056 * 13 12 10
15 15 N 1.46498 * 112.84724 * 292.10215 * 14 13 12
16 16 C 1.36939 * 119.99982 * 294.86907 * 15 14 13
17 17 H 1.07998 * 119.99991 * 353.75864 * 16 15 14
18 18 C 1.38807 * 119.99889 * 173.76691 * 16 15 14
19 19 N 1.31624 * 120.00022 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00014 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47584 * 89.99266 * 20 18 16
22 22 H 1.48503 * 109.47262 * 209.99897 * 20 18 16
23 23 H 1.48505 * 109.46931 * 329.99124 * 20 18 16
24 24 C 1.53777 * 113.61284 * 160.79433 * 14 13 12
25 25 C 1.53780 * 87.08111 * 220.01783 * 24 14 13
26 26 C 1.53781 * 113.61019 * 63.29750 * 14 13 12
27 27 C 1.39739 * 119.82361 * 0.27330 * 9 8 7
28 28 C 1.37706 * 119.90783 * 359.50013 * 27 9 8
29 29 H 4.44645 * 5.63351 * 180.02562 * 4 1 2
30 30 H 1.09003 * 109.47117 * 350.16592 * 3 2 1
31 31 H 1.09000 * 109.47517 * 230.16715 * 3 2 1
32 32 H 1.08997 * 109.47318 * 59.99664 * 4 3 2
33 33 H 1.09005 * 109.46640 * 299.99611 * 4 3 2
34 34 H 1.08005 * 119.95250 * 359.97438 * 7 6 5
35 35 H 1.08005 * 120.03943 * 179.97438 * 8 7 6
36 36 H 0.97000 * 120.00232 * 359.97438 * 12 10 9
37 37 H 1.09008 * 109.47182 * 300.30669 * 13 12 10
38 38 H 1.08999 * 109.47496 * 60.30968 * 13 12 10
39 39 H 0.97000 * 119.99585 * 114.86230 * 15 14 13
40 40 H 0.96999 * 119.99438 * 179.97438 * 19 18 16
41 41 H 1.08999 * 113.62074 * 334.56591 * 24 14 13
42 42 H 1.09005 * 113.61389 * 105.47315 * 24 14 13
43 43 H 1.09000 * 113.61912 * 270.89246 * 25 24 14
44 44 H 1.08998 * 113.61822 * 139.98225 * 25 24 14
45 45 H 1.09003 * 113.61149 * 254.52399 * 26 14 13
46 46 H 1.08995 * 113.62099 * 25.43488 * 26 14 13
47 47 H 1.07998 * 120.04198 * 179.72175 * 27 9 8
48 48 H 1.07998 * 119.95125 * 180.22854 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1558 0.4982 -1.3541
5 8 4.5848 0.4983 -1.3543
6 6 5.2007 0.9158 -2.4892
7 6 6.5889 0.9398 -2.5559
8 6 7.2176 1.3633 -3.7055
9 6 6.4582 1.7688 -4.8061
10 6 7.1280 2.2229 -6.0404
11 8 8.3422 2.2450 -6.1004
12 7 6.3938 2.6083 -7.1029
13 6 7.0587 3.0596 -8.3278
14 6 6.0047 3.4439 -9.3683
15 7 5.2440 2.2923 -9.8595
16 6 5.8746 1.3103 -10.5760
17 1 6.9078 1.4321 -10.8656
18 6 5.1857 0.1585 -10.9301
19 7 3.9265 0.0099 -10.5768
20 14 6.0456 -1.1807 -11.9081
21 1 6.6803 -2.1455 -10.9745
22 1 5.0530 -1.8906 -12.7543
23 1 7.0872 -0.5706 -12.7731
24 6 6.5453 4.3501 -10.4870
25 6 5.2178 5.1210 -10.3963
26 6 5.1221 4.6290 -8.9424
27 6 5.0629 1.7481 -4.7333
28 6 4.4417 1.3188 -3.5817
29 1 -1.0500 0.0001 0.0002
30 1 3.0098 -1.0118 0.1755
31 1 3.0091 0.6591 0.7891
32 1 2.7920 1.5105 -1.5297
33 1 2.7928 -0.1604 -2.1432
34 1 7.1752 0.6266 -1.7046
35 1 8.2963 1.3820 -3.7563
36 1 5.4251 2.5870 -7.0565
37 1 7.6819 3.9258 -8.1050
38 1 7.6810 2.2557 -8.7209
39 1 4.2937 2.2254 -9.6771
40 1 3.4450 -0.7949 -10.8246
41 1 7.4133 4.9390 -10.1908
42 1 6.6866 3.8343 -11.4368
43 1 4.4366 4.7233 -11.0441
44 1 5.3332 6.2013 -10.4849
45 1 4.1145 4.3383 -8.6453
46 1 5.6011 5.2942 -8.2239
47 1 4.4725 2.0650 -5.5803
48 1 3.3634 1.2990 -3.5259
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001570103860.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:02
Heat of formation + Delta-G solvation = 36.241810 kcal
Electronic energy + Delta-G solvation = -28681.221855 eV
Core-core repulsion = 24703.995506 eV
Total energy + Delta-G solvation = -3977.226349 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.51814 -39.52494 -38.57267 -37.15803 -34.92434 -33.97987 -33.27849 -31.45305
-30.86266 -30.16723 -29.72163 -27.11082 -25.30954 -24.86083 -23.91854 -23.29913
-22.25306 -21.46446 -20.09850 -18.97144 -18.39793 -18.04703 -17.38165 -17.08164
-16.61029 -16.34877 -15.40794 -15.12377 -14.91161 -14.62889 -14.53275 -14.28368
-14.16375 -14.00381 -13.89947 -13.61111 -13.33182 -13.22691 -12.76526 -12.62533
-12.41825 -12.26290 -12.01780 -11.77690 -11.24973 -11.17414 -11.02433 -10.99741
-10.86158 -10.71268 -10.52911 -10.37365 -10.23903 -10.12163 -9.74698 -9.59997
-9.46919 -9.16990 -8.89246 -8.58935 -8.26534 -7.05535 -5.84057 -3.13605
0.92499 1.24748 2.18774 2.40683 2.92907 3.06588 3.41462 3.47740
3.47979 3.62215 3.96481 4.05825 4.46856 4.52138 4.53097 4.65360
4.75358 4.87237 4.99132 5.13796 5.17263 5.22927 5.25494 5.29781
5.34374 5.39242 5.43344 5.51276 5.53498 5.59734 5.77499 5.85205
5.99125 6.06296 6.11756 6.17121 6.18257 6.30533 6.36495 6.38373
6.53776 6.54944 6.70837 6.89744 6.96690 7.05911 7.11706 7.16447
7.69224 7.99001 8.34843 8.63927 9.46247 9.99368 10.34665 11.37988
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.009581 B = 0.002521 C = 0.002355
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2921.880526 B =11105.538773 C =11884.287342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.194 4.194
3 C -0.008 4.008
4 C 0.062 3.938
5 O -0.313 6.313
6 C 0.149 3.851
7 C -0.161 4.161
8 C -0.023 4.023
9 C -0.164 4.164
10 C 0.555 3.445
11 O -0.553 6.553
12 N -0.700 5.700
13 C 0.120 3.880
14 C 0.173 3.827
15 N -0.699 5.699
16 C -0.235 4.235
17 H 0.071 0.929
18 C -0.008 4.008
19 N -0.931 5.931
20 Si 0.904 3.096
21 H -0.289 1.289
22 H -0.292 1.292
23 H -0.281 1.281
24 C -0.150 4.150
25 C -0.128 4.128
26 C -0.145 4.145
27 C -0.040 4.040
28 C -0.215 4.215
29 H 0.220 0.780
30 H 0.099 0.901
31 H 0.098 0.902
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.136 0.864
35 H 0.143 0.857
36 H 0.399 0.601
37 H 0.056 0.944
38 H 0.070 0.930
39 H 0.386 0.614
40 H 0.255 0.745
41 H 0.069 0.931
42 H 0.074 0.926
43 H 0.081 0.919
44 H 0.054 0.946
45 H 0.064 0.936
46 H 0.077 0.923
47 H 0.132 0.868
48 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.708 5.607 19.059 20.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.194 4.194
3 C -0.045 4.045
4 C -0.013 4.013
5 O -0.226 6.226
6 C 0.103 3.897
7 C -0.180 4.180
8 C -0.042 4.042
9 C -0.167 4.167
10 C 0.342 3.658
11 O -0.433 6.433
12 N -0.349 5.349
13 C -0.006 4.006
14 C 0.080 3.920
15 N -0.340 5.340
16 C -0.366 4.366
17 H 0.089 0.911
18 C -0.205 4.205
19 N -0.579 5.579
20 Si 0.735 3.265
21 H -0.217 1.217
22 H -0.218 1.218
23 H -0.207 1.207
24 C -0.191 4.191
25 C -0.166 4.166
26 C -0.183 4.183
27 C -0.059 4.059
28 C -0.234 4.234
29 H 0.237 0.763
30 H 0.117 0.883
31 H 0.116 0.884
32 H 0.088 0.912
33 H 0.089 0.911
34 H 0.154 0.846
35 H 0.160 0.840
36 H 0.234 0.766
37 H 0.074 0.926
38 H 0.088 0.912
39 H 0.220 0.780
40 H 0.065 0.935
41 H 0.087 0.913
42 H 0.093 0.907
43 H 0.100 0.900
44 H 0.073 0.927
45 H 0.083 0.917
46 H 0.096 0.904
47 H 0.150 0.850
48 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -2.677 5.425 19.059 19.996
hybrid contribution -0.851 -0.947 -0.689 1.448
sum -3.529 4.478 18.370 19.235
Atomic orbital electron populations
1.24997 0.95986 1.00458 0.99185 1.22591 0.93958 1.01089 1.01749
1.18424 0.84897 1.04030 0.97107 1.22719 0.78514 1.01976 0.98124
1.85943 1.20938 1.81083 1.34648 1.19173 0.92272 0.93162 0.85050
1.20360 0.91058 1.06751 0.99806 1.21075 1.00718 0.92162 0.90200
1.19987 0.93587 1.07343 0.95785 1.18095 0.86895 0.77553 0.83215
1.90731 1.13581 1.55459 1.83555 1.45689 1.10316 1.65474 1.13425
1.21888 0.95952 0.98966 0.83811 1.20824 0.91643 0.87488 0.92045
1.42056 1.08060 1.20182 1.63681 1.19100 0.95994 0.95474 1.26027
0.91105 1.24717 0.96203 0.98029 1.01509 1.69651 1.08819 1.28267
1.51149 0.86233 0.78380 0.82285 0.79567 1.21677 1.21836 1.20689
1.23309 0.96181 0.98382 1.01201 1.22632 0.98867 0.98275 0.96800
1.23154 1.00094 0.98006 0.97051 1.21183 0.93521 0.94208 0.96995
1.21168 1.00285 1.07725 0.94215 0.76275 0.88295 0.88352 0.91233
0.91113 0.84612 0.83952 0.76606 0.92623 0.91165 0.77970 0.93528
0.91275 0.90695 0.90039 0.92728 0.91732 0.90402 0.85005 0.84952
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.33 19.25 29.55 0.57 -0.76 16
2 C -0.19 -1.53 13.34 -37.13 -0.50 -2.03 16
3 C -0.01 -0.05 6.07 -29.52 -0.18 -0.23 16
4 C 0.06 0.49 4.69 37.16 0.17 0.67 16
5 O -0.31 -3.20 10.12 -18.84 -0.19 -3.39 16
6 C 0.15 1.73 6.70 -39.02 -0.26 1.47 16
7 C -0.16 -1.88 9.97 -39.50 -0.39 -2.28 16
8 C -0.02 -0.30 9.58 -39.22 -0.38 -0.68 16
9 C -0.16 -2.46 5.87 -104.96 -0.62 -3.08 16
10 C 0.56 9.98 7.76 -12.44 -0.10 9.88 16
11 O -0.55 -11.56 16.34 5.29 0.09 -11.47 16
12 N -0.70 -12.13 5.37 -61.32 -0.33 -12.46 16
13 C 0.12 2.22 5.08 -4.04 -0.02 2.20 16
14 C 0.17 3.16 0.80 -131.01 -0.11 3.05 16
15 N -0.70 -15.88 5.19 -46.48 -0.24 -16.12 16
16 C -0.24 -6.15 9.05 -15.06 -0.14 -6.28 16
17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16
19 N -0.93 -26.79 13.07 55.49 0.73 -26.06 16
20 Si 0.90 22.19 29.55 -169.99 -5.02 17.17 16
21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
24 C -0.15 -2.55 7.28 -25.92 -0.19 -2.73 16
25 C -0.13 -1.96 7.99 -25.92 -0.21 -2.17 16
26 C -0.15 -2.18 7.04 -25.91 -0.18 -2.36 16
27 C -0.04 -0.53 9.53 -39.21 -0.37 -0.90 16
28 C -0.22 -2.48 9.01 -39.50 -0.36 -2.84 16
29 H 0.22 0.82 7.80 -54.09 -0.42 0.40 16
30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16
31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.07 0.51 7.65 -51.93 -0.40 0.11 16
33 H 0.07 0.56 7.66 -51.93 -0.40 0.17 16
34 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16
35 H 0.14 1.86 7.64 -52.48 -0.40 1.46 16
36 H 0.40 6.38 6.32 -40.82 -0.26 6.12 16
37 H 0.06 0.96 8.01 -51.92 -0.42 0.55 16
38 H 0.07 1.52 7.80 -51.93 -0.41 1.11 16
39 H 0.39 9.32 7.87 -40.82 -0.32 9.00 16
40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
41 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16
42 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16
43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
45 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16
46 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16
47 H 0.13 1.59 6.39 -52.49 -0.34 1.25 16
48 H 0.13 1.25 6.28 -52.49 -0.33 0.92 16
LS Contribution 407.77 15.07 6.14 6.14
Total: -1.00 -31.79 407.77 -9.18 -40.97
By element:
Atomic # 1 Polarization: 21.65 SS G_CDS: -7.01 Total: 14.64 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: -3.34 Total: -9.40 kcal
Atomic # 7 Polarization: -54.80 SS G_CDS: 0.15 Total: -54.65 kcal
Atomic # 8 Polarization: -14.76 SS G_CDS: -0.10 Total: -14.86 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -31.79 -9.18 -40.97 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570103860.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.208 kcal
(2) G-P(sol) polarization free energy of solvation -31.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.420 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.242 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds