Wall clock time and date at job start Sat Apr 11 2020 06:38:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17408 * 1
3 3 C 1.47191 * 179.97438 * 2 1
4 4 C 1.53005 * 109.47205 * 110.16564 * 3 2 1
5 5 O 1.42897 * 109.47276 * 180.02562 * 4 3 2
6 6 C 1.35711 * 117.00224 * 180.02562 * 5 4 3
7 7 C 1.38997 * 119.91565 * 180.02562 * 6 5 4
8 8 C 1.37700 * 120.08859 * 180.02562 * 7 6 5
9 9 C 1.39728 * 119.91377 * 359.97233 * 8 7 6
10 10 C 1.47596 * 120.09003 * 180.02562 * 9 8 7
11 11 O 1.21584 * 120.00171 * 359.97438 * 10 9 8
12 12 N 1.34778 * 120.00090 * 179.72464 * 10 9 8
13 13 C 1.46500 * 119.99960 * 179.97438 * 12 10 9
14 14 C 1.53007 * 109.47233 * 180.31056 * 13 12 10
15 15 N 1.46498 * 112.84724 * 292.10215 * 14 13 12
16 16 C 1.36939 * 119.99982 * 294.86907 * 15 14 13
17 17 H 1.07998 * 119.99991 * 353.75864 * 16 15 14
18 18 C 1.38807 * 119.99889 * 173.76691 * 16 15 14
19 19 N 1.31624 * 120.00022 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00014 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.47584 * 89.99266 * 20 18 16
22 22 H 1.48503 * 109.47262 * 209.99897 * 20 18 16
23 23 H 1.48505 * 109.46931 * 329.99124 * 20 18 16
24 24 C 1.53777 * 113.61284 * 160.79433 * 14 13 12
25 25 C 1.53780 * 87.08111 * 220.01783 * 24 14 13
26 26 C 1.53781 * 113.61019 * 63.29750 * 14 13 12
27 27 C 1.39739 * 119.82361 * 0.27330 * 9 8 7
28 28 C 1.37706 * 119.90783 * 359.50013 * 27 9 8
29 29 H 4.44645 * 5.63351 * 180.02562 * 4 1 2
30 30 H 1.09003 * 109.47117 * 350.16592 * 3 2 1
31 31 H 1.09000 * 109.47517 * 230.16715 * 3 2 1
32 32 H 1.08997 * 109.47318 * 59.99664 * 4 3 2
33 33 H 1.09005 * 109.46640 * 299.99611 * 4 3 2
34 34 H 1.08005 * 119.95250 * 359.97438 * 7 6 5
35 35 H 1.08005 * 120.03943 * 179.97438 * 8 7 6
36 36 H 0.97000 * 120.00232 * 359.97438 * 12 10 9
37 37 H 1.09008 * 109.47182 * 300.30669 * 13 12 10
38 38 H 1.08999 * 109.47496 * 60.30968 * 13 12 10
39 39 H 0.97000 * 119.99585 * 114.86230 * 15 14 13
40 40 H 0.96999 * 119.99438 * 179.97438 * 19 18 16
41 41 H 1.08999 * 113.62074 * 334.56591 * 24 14 13
42 42 H 1.09005 * 113.61389 * 105.47315 * 24 14 13
43 43 H 1.09000 * 113.61912 * 270.89246 * 25 24 14
44 44 H 1.08998 * 113.61822 * 139.98225 * 25 24 14
45 45 H 1.09003 * 113.61149 * 254.52399 * 26 14 13
46 46 H 1.08995 * 113.62099 * 25.43488 * 26 14 13
47 47 H 1.07998 * 120.04198 * 179.72175 * 27 9 8
48 48 H 1.07998 * 119.95125 * 180.22854 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1741 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1558 0.4982 -1.3541
5 8 4.5848 0.4983 -1.3543
6 6 5.2007 0.9158 -2.4892
7 6 6.5889 0.9398 -2.5559
8 6 7.2176 1.3633 -3.7055
9 6 6.4582 1.7688 -4.8061
10 6 7.1280 2.2229 -6.0404
11 8 8.3422 2.2450 -6.1004
12 7 6.3938 2.6083 -7.1029
13 6 7.0587 3.0596 -8.3278
14 6 6.0047 3.4439 -9.3683
15 7 5.2440 2.2923 -9.8595
16 6 5.8746 1.3103 -10.5760
17 1 6.9078 1.4321 -10.8656
18 6 5.1857 0.1585 -10.9301
19 7 3.9265 0.0099 -10.5768
20 14 6.0456 -1.1807 -11.9081
21 1 6.6803 -2.1455 -10.9745
22 1 5.0530 -1.8906 -12.7543
23 1 7.0872 -0.5706 -12.7731
24 6 6.5453 4.3501 -10.4870
25 6 5.2178 5.1210 -10.3963
26 6 5.1221 4.6290 -8.9424
27 6 5.0629 1.7481 -4.7333
28 6 4.4417 1.3188 -3.5817
29 1 -1.0500 0.0001 0.0002
30 1 3.0098 -1.0118 0.1755
31 1 3.0091 0.6591 0.7891
32 1 2.7920 1.5105 -1.5297
33 1 2.7928 -0.1604 -2.1432
34 1 7.1752 0.6266 -1.7046
35 1 8.2963 1.3820 -3.7563
36 1 5.4251 2.5870 -7.0565
37 1 7.6819 3.9258 -8.1050
38 1 7.6810 2.2557 -8.7209
39 1 4.2937 2.2254 -9.6771
40 1 3.4450 -0.7949 -10.8246
41 1 7.4133 4.9390 -10.1908
42 1 6.6866 3.8343 -11.4368
43 1 4.4366 4.7233 -11.0441
44 1 5.3332 6.2013 -10.4849
45 1 4.1145 4.3383 -8.6453
46 1 5.6011 5.2942 -8.2239
47 1 4.4725 2.0650 -5.5803
48 1 3.3634 1.2990 -3.5259
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570103860.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:01
Heat of formation + Delta-G solvation = 17.570153 kcal
Electronic energy + Delta-G solvation = -28682.031519 eV
Core-core repulsion = 24703.995506 eV
Total energy + Delta-G solvation = -3978.036013 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.53807 -40.78216 -39.89627 -38.19606 -35.53061 -35.38799 -35.20874 -32.39152
-31.90974 -31.70920 -30.72040 -28.52149 -26.72374 -25.86332 -25.45239 -24.44559
-23.35402 -22.64262 -21.39320 -19.86579 -19.64219 -19.14648 -18.87269 -18.40244
-17.44093 -17.29324 -16.86556 -16.38845 -16.19979 -16.09588 -15.78707 -15.60510
-15.21271 -14.99262 -14.87575 -14.84732 -14.53021 -14.36670 -14.20625 -13.75655
-13.60242 -13.20894 -13.11362 -13.07467 -12.95389 -12.92080 -12.57218 -12.16508
-11.98563 -11.93715 -11.90220 -11.60918 -11.48538 -11.26849 -11.11381 -11.05419
-10.90041 -10.73418 -10.13543 -10.02679 -9.29556 -8.98374 -7.94382 -5.20648
-0.14070 0.28691 1.43686 1.46123 1.52096 1.58278 1.84540 1.87608
2.21785 2.29330 2.54302 2.83049 3.37733 3.56982 3.65138 3.74553
3.76990 3.81292 3.83858 3.96369 3.98647 4.01105 4.09858 4.17583
4.22639 4.29769 4.37864 4.53681 4.64509 4.82814 4.82996 4.84314
4.89337 4.91943 4.92641 5.00658 5.07944 5.12160 5.13237 5.20274
5.30888 5.34725 5.42926 5.49648 5.58613 5.63963 5.71135 6.26312
6.30235 6.61280 6.64784 7.24959 7.36606 8.09999 8.34174 9.27920
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.009581 B = 0.002521 C = 0.002355
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2921.880526 B =11105.538773 C =11884.287342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.225 4.225
3 C -0.005 4.005
4 C 0.058 3.942
5 O -0.313 6.313
6 C 0.155 3.845
7 C -0.159 4.159
8 C -0.028 4.028
9 C -0.189 4.189
10 C 0.552 3.448
11 O -0.591 6.591
12 N -0.697 5.697
13 C 0.128 3.872
14 C 0.158 3.842
15 N -0.704 5.704
16 C -0.222 4.222
17 H 0.065 0.935
18 C -0.065 4.065
19 N -0.960 5.960
20 Si 0.955 3.045
21 H -0.296 1.296
22 H -0.295 1.295
23 H -0.274 1.274
24 C -0.150 4.150
25 C -0.120 4.120
26 C -0.128 4.128
27 C -0.041 4.041
28 C -0.214 4.214
29 H 0.245 0.755
30 H 0.104 0.896
31 H 0.108 0.892
32 H 0.078 0.922
33 H 0.071 0.929
34 H 0.158 0.842
35 H 0.139 0.861
36 H 0.406 0.594
37 H 0.072 0.928
38 H 0.031 0.969
39 H 0.378 0.622
40 H 0.249 0.751
41 H 0.094 0.906
42 H 0.047 0.953
43 H 0.062 0.938
44 H 0.086 0.914
45 H 0.068 0.932
46 H 0.104 0.896
47 H 0.139 0.861
48 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.602 6.747 20.683 22.237
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.225 4.225
3 C -0.041 4.041
4 C -0.017 4.017
5 O -0.226 6.226
6 C 0.109 3.891
7 C -0.178 4.178
8 C -0.047 4.047
9 C -0.192 4.192
10 C 0.341 3.659
11 O -0.474 6.474
12 N -0.346 5.346
13 C 0.001 3.999
14 C 0.066 3.934
15 N -0.343 5.343
16 C -0.354 4.354
17 H 0.083 0.917
18 C -0.258 4.258
19 N -0.610 5.610
20 Si 0.785 3.215
21 H -0.224 1.224
22 H -0.221 1.221
23 H -0.199 1.199
24 C -0.190 4.190
25 C -0.157 4.157
26 C -0.165 4.165
27 C -0.060 4.060
28 C -0.232 4.232
29 H 0.261 0.739
30 H 0.122 0.878
31 H 0.126 0.874
32 H 0.097 0.903
33 H 0.090 0.910
34 H 0.176 0.824
35 H 0.157 0.843
36 H 0.242 0.758
37 H 0.090 0.910
38 H 0.049 0.951
39 H 0.211 0.789
40 H 0.058 0.942
41 H 0.112 0.888
42 H 0.066 0.934
43 H 0.080 0.920
44 H 0.104 0.896
45 H 0.087 0.913
46 H 0.122 0.878
47 H 0.156 0.844
48 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -3.565 6.601 20.690 22.008
hybrid contribution -0.591 -1.265 -1.078 1.764
sum -4.157 5.336 19.612 20.746
Atomic orbital electron populations
1.25771 0.96926 0.99546 0.98143 1.23000 0.94708 1.02015 1.02744
1.18412 0.84526 1.04539 0.96618 1.22898 0.77141 1.02649 0.99021
1.85952 1.22301 1.80510 1.33837 1.19294 0.92402 0.92062 0.85387
1.20547 0.91520 1.05980 0.99734 1.21120 1.00672 0.92433 0.90515
1.19857 0.94524 1.09805 0.95063 1.18594 0.86566 0.76719 0.84045
1.90696 1.15186 1.57183 1.84359 1.45659 1.10617 1.65318 1.12962
1.21734 0.95772 0.98098 0.84253 1.21121 0.92402 0.87133 0.92713
1.42086 1.07865 1.20934 1.63462 1.19291 0.95574 0.95826 1.24693
0.91673 1.25301 0.96956 1.00035 1.03536 1.69759 1.09789 1.28502
1.52994 0.85416 0.77510 0.80142 0.78390 1.22380 1.22108 1.19912
1.23334 0.98229 0.98308 0.99092 1.22556 0.96900 0.99879 0.96376
1.23111 0.99718 0.96120 0.97576 1.21265 0.92715 0.94173 0.97871
1.21394 1.01485 1.06867 0.93503 0.73855 0.87798 0.87402 0.90348
0.91030 0.82425 0.84301 0.75801 0.91036 0.95063 0.78900 0.94215
0.88784 0.93389 0.91952 0.89580 0.91346 0.87784 0.84377 0.82702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.26 19.25 74.32 1.43 -0.83 16
2 C -0.22 -3.17 13.34 31.12 0.42 -2.75 16
3 C 0.00 -0.05 6.07 28.79 0.17 0.12 16
4 C 0.06 0.79 4.69 71.98 0.34 1.13 16
5 O -0.31 -5.66 10.12 -90.32 -0.91 -6.58 16
6 C 0.16 3.28 6.70 22.63 0.15 3.43 16
7 C -0.16 -3.48 9.97 22.32 0.22 -3.26 16
8 C -0.03 -0.76 9.58 22.50 0.22 -0.54 16
9 C -0.19 -5.67 5.87 -20.08 -0.12 -5.78 16
10 C 0.55 20.11 7.76 86.71 0.67 20.78 16
11 O -0.59 -25.39 16.34 -3.98 -0.07 -25.45 16
12 N -0.70 -24.17 5.37 -466.19 -2.50 -26.67 16
13 C 0.13 4.73 5.08 86.38 0.44 5.17 16
14 C 0.16 5.65 0.80 4.13 0.00 5.65 16
15 N -0.70 -32.25 5.19 -300.97 -1.56 -33.81 16
16 C -0.22 -11.79 9.05 84.03 0.76 -11.03 16
17 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16
18 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16
19 N -0.96 -56.19 13.07 21.65 0.28 -55.90 16
20 Si 0.95 46.43 29.55 68.60 2.03 48.45 16
21 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16
22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16
23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
24 C -0.15 -4.87 7.28 31.12 0.23 -4.64 16
25 C -0.12 -3.38 7.99 31.12 0.25 -3.13 16
26 C -0.13 -3.52 7.04 31.12 0.22 -3.30 16
27 C -0.04 -1.04 9.53 22.51 0.21 -0.83 16
28 C -0.21 -4.53 9.01 22.33 0.20 -4.33 16
29 H 0.25 1.23 7.80 -4.42 -0.03 1.20 16
30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16
31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
32 H 0.08 0.95 7.65 -2.39 -0.02 0.94 16
33 H 0.07 0.99 7.66 -2.38 -0.02 0.97 16
34 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16
35 H 0.14 3.71 7.64 -2.91 -0.02 3.69 16
36 H 0.41 12.83 6.32 -92.71 -0.59 12.25 16
37 H 0.07 2.41 8.01 -2.38 -0.02 2.39 16
38 H 0.03 1.39 7.80 -2.39 -0.02 1.37 16
39 H 0.38 18.42 7.87 -92.71 -0.73 17.69 16
40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16
41 H 0.09 2.59 8.01 -2.39 -0.02 2.57 16
42 H 0.05 1.81 7.87 -2.38 -0.02 1.79 16
43 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16
44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
45 H 0.07 1.87 8.09 -2.39 -0.02 1.86 16
46 H 0.10 2.39 8.10 -2.39 -0.02 2.37 16
47 H 0.14 3.20 6.39 -2.91 -0.02 3.18 16
48 H 0.16 2.51 6.28 -2.91 -0.02 2.50 16
Total: -1.00 -69.68 407.77 3.21 -66.47
By element:
Atomic # 1 Polarization: 41.16 SS G_CDS: -0.33 Total: 40.83 kcal
Atomic # 6 Polarization: -13.62 SS G_CDS: 6.28 Total: -7.34 kcal
Atomic # 7 Polarization: -112.60 SS G_CDS: -3.78 Total: -116.38 kcal
Atomic # 8 Polarization: -31.05 SS G_CDS: -0.98 Total: -32.03 kcal
Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal
Total: -69.68 3.21 -66.47 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570103860.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.040 kcal
(2) G-P(sol) polarization free energy of solvation -69.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds