Wall clock time and date at job start Sat Apr 11 2020 06:39:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.45774 * 2 1
4 4 C 1.53043 * 109.45907 * 240.03382 * 2 1 3
5 5 C 1.53193 * 109.30846 * 301.34429 * 4 2 1
6 6 N 1.46921 * 108.77446 * 305.36237 * 5 4 2
7 7 C 1.34777 * 120.63206 * 233.62985 * 6 5 4
8 8 O 1.21672 * 120.00269 * 171.17414 * 7 6 5
9 9 C 1.46889 * 119.99816 * 351.18482 * 7 6 5
10 10 C 1.36116 * 125.44104 * 331.69177 * 9 7 6
11 11 C 1.41695 * 107.75359 * 179.97438 * 10 9 7
12 12 C 1.40024 * 133.34964 * 180.02562 * 11 10 9
13 13 C 1.36576 * 119.82820 * 179.97438 * 12 11 10
14 14 C 1.38861 * 120.60269 * 0.02807 * 13 12 11
15 15 C 1.37842 * 120.62943 * 359.95354 * 14 13 12
16 16 C 1.39082 * 119.81610 * 0.04129 * 15 14 13
17 17 N 1.37837 * 133.16415 * 180.31817 * 16 15 14
18 18 C 1.36889 * 125.62205 * 359.91469 * 17 16 15
19 19 H 1.07998 * 120.00990 * 134.81378 * 18 17 16
20 20 C 1.39020 * 119.99868 * 314.81439 * 18 17 16
21 21 N 1.31340 * 120.00420 * 169.94538 * 20 18 17
22 22 Si 1.86804 * 119.99691 * 349.94388 * 20 18 17
23 23 H 1.48505 * 109.47035 * 94.69247 * 22 20 18
24 24 H 1.48496 * 109.46963 * 214.69507 * 22 20 18
25 25 H 1.48508 * 109.47206 * 334.69520 * 22 20 18
26 26 C 1.46926 * 118.73953 * 53.61255 * 6 5 4
27 27 C 1.53190 * 108.89403 * 306.31821 * 26 6 5
28 28 H 1.08999 * 109.49822 * 294.75684 * 27 26 6
29 29 C 1.52994 * 109.50083 * 174.65584 * 27 26 6
30 30 O 1.42907 * 109.47048 * 64.99985 * 29 27 26
31 31 H 1.08999 * 109.47358 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.46668 * 299.96724 * 1 2 3
33 33 H 1.08996 * 109.47528 * 59.96764 * 1 2 3
34 34 H 1.08994 * 109.49738 * 181.38895 * 4 2 1
35 35 H 1.09007 * 109.52275 * 61.30641 * 4 2 1
36 36 H 1.09000 * 109.58586 * 185.57451 * 5 4 2
37 37 H 1.09000 * 109.70780 * 65.21876 * 5 4 2
38 38 H 1.08006 * 126.11753 * 359.94457 * 10 9 7
39 39 H 1.07996 * 120.08860 * 359.97438 * 12 11 10
40 40 H 1.07999 * 119.69910 * 179.97438 * 13 12 11
41 41 H 1.08002 * 119.68345 * 179.97438 * 14 13 12
42 42 H 1.08000 * 120.09220 * 180.02562 * 15 14 13
43 43 H 0.97002 * 120.00099 * 179.97438 * 21 20 18
44 44 H 1.08995 * 109.58735 * 66.18051 * 26 6 5
45 45 H 1.09005 * 109.58761 * 186.46082 * 26 6 5
46 46 H 1.09001 * 109.47559 * 185.00130 * 29 27 26
47 47 H 1.09004 * 109.47430 * 305.00280 * 29 27 26
48 48 H 0.96700 * 113.99834 * 180.02562 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0398 -0.7208 -1.2501
5 6 1.4995 -2.1542 -1.2642
6 7 1.8625 -2.8088 0.0001
7 6 2.5164 -3.9873 0.0001
8 8 2.9528 -4.4409 1.0414
9 6 2.7023 -4.7241 -1.2570
10 6 1.8722 -4.6690 -2.3343
11 6 2.4044 -5.5207 -3.3338
12 6 1.9912 -5.8589 -4.6283
13 6 2.7330 -6.7319 -5.3719
14 6 3.8955 -7.2894 -4.8560
15 6 4.3227 -6.9715 -3.5846
16 6 3.5840 -6.0849 -2.8084
17 7 3.7512 -5.5796 -1.5369
18 6 4.7840 -5.8785 -0.6896
19 1 5.2831 -5.0894 -0.1470
20 6 5.1903 -7.1981 -0.5275
21 7 6.2978 -7.4689 0.1245
22 14 4.1611 -8.5861 -1.2372
23 1 4.6841 -8.9549 -2.5773
24 1 4.2316 -9.7648 -0.3367
25 1 2.7495 -8.1420 -1.3618
26 6 1.4996 -2.1540 1.2643
27 6 2.0402 -0.7207 1.2537
28 1 3.1299 -0.7430 1.2418
29 6 1.5574 0.0165 2.5044
30 8 2.1254 -0.5929 3.6655
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5134 0.8904
33 1 -0.3634 0.5143 -0.8896
34 1 3.1295 -0.7428 -1.2384
35 1 1.6961 -0.1937 -2.1402
36 1 1.9380 -2.7018 -2.0984
37 1 0.4146 -2.1370 -1.3683
38 1 0.9692 -4.0816 -2.4129
39 1 1.0883 -5.4306 -5.0376
40 1 2.4122 -6.9916 -6.3699
41 1 4.4706 -7.9784 -5.4569
42 1 5.2283 -7.4100 -3.1922
43 1 6.5811 -8.3896 0.2379
44 1 0.4147 -2.1346 1.3675
45 1 1.9362 -2.7031 2.0987
46 1 1.8674 1.0602 2.4533
47 1 0.4702 -0.0373 2.5609
48 1 1.8616 -0.1762 4.4973
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598783472.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:11
Heat of formation + Delta-G solvation = -9.783855 kcal
Electronic energy + Delta-G solvation = -31066.602525 eV
Core-core repulsion = 27087.380353 eV
Total energy + Delta-G solvation = -3979.222172 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.173 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.97932 -39.86790 -37.84452 -36.48324 -36.04954 -33.97811 -33.20926 -31.67159
-31.25790 -29.26252 -28.61323 -27.87247 -25.93401 -24.93319 -24.70407 -22.61331
-22.05413 -21.11992 -20.21790 -19.36590 -18.47549 -17.83172 -17.43415 -16.48625
-16.09841 -15.73530 -15.51600 -15.14385 -14.98335 -14.64559 -14.31128 -14.14952
-13.92799 -13.74886 -13.68578 -13.28690 -13.07421 -12.91687 -12.76801 -12.61640
-12.37026 -12.10232 -11.99523 -11.67500 -11.53014 -11.34772 -11.11273 -11.02536
-10.86346 -10.77528 -10.53320 -10.46257 -10.37482 -10.15721 -10.04554 -9.81072
-9.35020 -9.19021 -8.60269 -8.24002 -7.34387 -6.92895 -6.74832 -4.46454
1.61068 2.47349 2.84718 3.08186 3.19550 3.21480 3.31435 3.98206
4.01963 4.03334 4.32793 4.59532 4.63571 4.68567 4.83690 4.87532
4.94085 5.16091 5.20341 5.25427 5.34834 5.41061 5.46541 5.49014
5.56053 5.61297 5.69305 5.79232 5.82384 5.85528 5.87614 5.96825
6.07435 6.11468 6.14554 6.20641 6.25048 6.36560 6.43189 6.56956
6.66205 6.79555 6.90773 7.19869 7.29964 7.33258 7.51951 7.60041
7.62680 7.84968 7.89219 8.26964 8.74920 8.85463 9.08997 10.30677
Molecular weight = 342.17amu
Principal moments of inertia in cm(-1)
A = 0.013971 B = 0.004038 C = 0.003304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.734910 B = 6931.793246 C = 8472.644035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.084 4.084
3 H 0.071 0.929
4 C -0.129 4.129
5 C 0.089 3.911
6 N -0.611 5.611
7 C 0.588 3.412
8 O -0.514 6.514
9 C -0.003 4.003
10 C -0.207 4.207
11 C -0.118 4.118
12 C -0.082 4.082
13 C -0.156 4.156
14 C -0.134 4.134
15 C -0.106 4.106
16 C 0.053 3.947
17 N -0.253 5.253
18 C -0.332 4.332
19 H 0.121 0.879
20 C 0.081 3.919
21 N -0.834 5.834
22 Si 0.876 3.124
23 H -0.246 1.246
24 H -0.285 1.285
25 H -0.254 1.254
26 C 0.126 3.874
27 C -0.098 4.098
28 H 0.083 0.917
29 C 0.083 3.917
30 O -0.568 6.568
31 H 0.063 0.937
32 H 0.053 0.947
33 H 0.056 0.944
34 H 0.068 0.932
35 H 0.076 0.924
36 H 0.113 0.887
37 H 0.066 0.934
38 H 0.138 0.862
39 H 0.110 0.890
40 H 0.109 0.891
41 H 0.112 0.888
42 H 0.121 0.879
43 H 0.285 0.715
44 H 0.062 0.938
45 H 0.097 0.903
46 H 0.045 0.955
47 H 0.048 0.952
48 H 0.377 0.623
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.600 13.659 -2.915 18.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.103 4.103
3 H 0.089 0.911
4 C -0.167 4.167
5 C -0.034 4.034
6 N -0.346 5.346
7 C 0.377 3.623
8 O -0.388 6.388
9 C -0.121 4.121
10 C -0.234 4.234
11 C -0.122 4.122
12 C -0.100 4.100
13 C -0.176 4.176
14 C -0.154 4.154
15 C -0.125 4.125
16 C -0.060 4.060
17 N 0.085 4.915
18 C -0.460 4.460
19 H 0.138 0.862
20 C -0.132 4.132
21 N -0.464 5.464
22 Si 0.701 3.299
23 H -0.171 1.171
24 H -0.211 1.211
25 H -0.177 1.177
26 C 0.003 3.997
27 C -0.118 4.118
28 H 0.101 0.899
29 C 0.005 3.995
30 O -0.373 6.373
31 H 0.082 0.918
32 H 0.072 0.928
33 H 0.075 0.925
34 H 0.087 0.913
35 H 0.094 0.906
36 H 0.131 0.869
37 H 0.084 0.916
38 H 0.156 0.844
39 H 0.128 0.872
40 H 0.127 0.873
41 H 0.130 0.870
42 H 0.139 0.861
43 H 0.096 0.904
44 H 0.080 0.920
45 H 0.116 0.884
46 H 0.063 0.937
47 H 0.066 0.934
48 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -10.603 12.781 -2.402 16.779
hybrid contribution -0.586 -0.247 0.290 0.699
sum -11.190 12.534 -2.112 16.934
Atomic orbital electron populations
1.22020 0.95170 1.02498 1.01550 1.21112 0.95940 0.98996 0.94202
0.91099 1.21951 1.01571 0.95864 0.97360 1.22311 0.99919 0.93252
0.87879 1.47735 1.59311 1.20838 1.06739 1.17276 0.77250 0.80049
0.87745 1.90838 1.47254 1.67381 1.33297 1.19809 0.92252 1.04274
0.95743 1.20564 1.02235 1.07074 0.93489 1.17939 0.97182 1.01847
0.95279 1.20130 0.98978 0.98312 0.92614 1.20355 0.96898 1.00781
0.99516 1.20551 0.97874 1.02094 0.94888 1.20306 1.00199 0.97875
0.94143 1.18387 0.98990 1.02519 0.86104 1.40210 1.14835 1.28186
1.08284 1.19360 1.08173 0.95573 1.22887 0.86196 1.25457 0.95221
0.98131 0.94372 1.69614 1.19316 1.21864 1.35635 0.86969 0.82723
0.80889 0.79353 1.17117 1.21129 1.17743 1.21466 0.98850 0.92000
0.87356 1.21568 1.01999 0.95397 0.92793 0.89905 1.22201 0.96521
0.95268 0.85486 1.86587 1.74130 1.60302 1.16284 0.91788 0.92762
0.92473 0.91291 0.90581 0.86935 0.91629 0.84395 0.87223 0.87304
0.86975 0.86085 0.90443 0.92007 0.88423 0.93651 0.93367 0.77704
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.26 8.12 37.16 0.30 -0.96 16
2 C -0.08 -0.81 2.72 -90.42 -0.25 -1.06 16
3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
4 C -0.13 -1.42 5.63 -26.61 -0.15 -1.57 16
5 C 0.09 1.17 4.55 -3.71 -0.02 1.16 16
6 N -0.61 -10.32 2.97 -174.24 -0.52 -10.84 16
7 C 0.59 13.16 7.44 -12.76 -0.09 13.06 16
8 O -0.51 -13.62 15.46 5.21 0.08 -13.54 16
9 C 0.00 -0.08 6.23 -82.25 -0.51 -0.59 16
10 C -0.21 -4.14 8.36 -39.03 -0.33 -4.46 16
11 C -0.12 -2.50 6.16 -106.89 -0.66 -3.16 16
12 C -0.08 -1.47 10.06 -39.51 -0.40 -1.87 16
13 C -0.16 -2.71 9.97 -39.95 -0.40 -3.10 16
14 C -0.13 -2.55 10.02 -39.50 -0.40 -2.94 16
15 C -0.11 -2.39 6.60 -39.41 -0.26 -2.65 16
16 C 0.05 1.28 4.94 -83.84 -0.41 0.87 16
17 N -0.25 -6.60 2.43 -56.08 -0.14 -6.74 16
18 C -0.33 -9.53 9.11 -15.00 -0.14 -9.67 16
19 H 0.12 3.74 8.05 -52.49 -0.42 3.31 16
20 C 0.08 2.27 5.20 -17.47 -0.09 2.18 16
21 N -0.83 -23.87 13.95 55.50 0.77 -23.09 16
22 Si 0.88 21.83 23.68 -169.99 -4.03 17.81 16
23 H -0.25 -5.64 5.48 56.52 0.31 -5.33 16
24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16
25 H -0.25 -6.73 6.87 56.52 0.39 -6.34 16
26 C 0.13 1.87 5.08 -3.71 -0.02 1.85 16
27 C -0.10 -1.19 2.37 -90.34 -0.21 -1.41 16
28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
29 C 0.08 0.81 5.98 37.15 0.22 1.04 16
30 O -0.57 -6.53 13.30 -35.23 -0.47 -7.00 16
31 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16
32 H 0.05 0.38 6.58 -51.92 -0.34 0.04 16
33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
35 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16
36 H 0.11 1.66 4.39 -51.93 -0.23 1.43 16
37 H 0.07 0.73 6.70 -51.93 -0.35 0.38 16
38 H 0.14 2.21 6.33 -52.48 -0.33 1.88 16
39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
40 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16
41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16
42 H 0.12 2.83 5.49 -52.49 -0.29 2.54 16
43 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16
44 H 0.06 0.79 6.69 -51.93 -0.35 0.45 16
45 H 0.10 1.78 6.84 -51.93 -0.36 1.43 16
46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
47 H 0.05 0.40 6.74 -51.93 -0.35 0.05 16
48 H 0.38 2.41 9.12 45.56 0.42 2.82 16
LS Contribution 363.05 15.07 5.47 5.47
Total: -1.00 -33.87 363.05 -8.53 -42.40
By element:
Atomic # 1 Polarization: 14.72 SS G_CDS: -5.90 Total: 8.81 kcal
Atomic # 6 Polarization: -9.47 SS G_CDS: -3.81 Total: -13.28 kcal
Atomic # 7 Polarization: -40.79 SS G_CDS: 0.12 Total: -40.67 kcal
Atomic # 8 Polarization: -20.16 SS G_CDS: -0.39 Total: -20.54 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -4.03 Total: 17.81 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -33.87 -8.53 -42.40 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598783472.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.620 kcal
(2) G-P(sol) polarization free energy of solvation -33.873 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds