Wall clock time and date at job start Sat Apr 11 2020 06:38:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31632 * 1
3 3 Si 1.86793 * 120.00406 * 2 1
4 4 H 1.48505 * 109.46997 * 270.00130 * 3 2 1
5 5 H 1.48502 * 109.47443 * 29.99576 * 3 2 1
6 6 H 1.48498 * 109.47191 * 150.00170 * 3 2 1
7 7 C 1.38799 * 119.99369 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99835 * 179.97438 * 7 2 1
9 9 S 1.76202 * 120.00275 * 0.02562 * 7 2 1
10 10 C 1.81005 * 99.99791 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.46842 * 180.02562 * 10 9 7
12 12 O 1.21281 * 120.00115 * 359.97438 * 11 10 9
13 13 N 1.34776 * 119.99912 * 180.02562 * 11 10 9
14 14 C 1.46920 * 120.63166 * 359.97438 * 13 11 10
15 15 C 1.53194 * 108.77730 * 126.41050 * 14 13 11
16 16 C 1.53041 * 109.30956 * 54.63772 * 15 14 13
17 17 C 1.53039 * 109.53783 * 298.63127 * 16 15 14
18 18 H 1.09007 * 109.52239 * 301.40151 * 17 16 15
19 19 N 1.46902 * 109.49955 * 181.32182 * 17 16 15
20 20 C 1.46894 * 110.99820 * 155.16238 * 19 17 16
21 21 C 1.53009 * 109.46764 * 180.02562 * 20 19 17
22 22 O 1.42899 * 109.47113 * 64.99856 * 21 20 19
23 23 C 1.42903 * 113.99629 * 180.02562 * 22 21 20
24 24 C 1.53000 * 109.46726 * 180.02562 * 23 22 21
25 25 C 1.53002 * 117.49654 * 243.74220 * 24 23 22
26 26 C 1.52999 * 117.49718 * 175.08876 * 24 23 22
27 27 C 1.46929 * 120.62811 * 179.97438 * 13 11 10
28 28 H 0.97007 * 119.99493 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.46849 * 60.00472 * 10 9 7
30 30 H 1.08995 * 109.47568 * 299.99762 * 10 9 7
31 31 H 1.08999 * 109.58613 * 246.19909 * 14 13 11
32 32 H 1.09002 * 109.58545 * 6.48257 * 14 13 11
33 33 H 1.09000 * 109.49671 * 174.58336 * 15 14 13
34 34 H 1.08994 * 109.50205 * 294.64906 * 15 14 13
35 35 H 1.08999 * 109.45789 * 178.61415 * 16 15 14
36 36 H 1.09000 * 109.46329 * 58.65650 * 16 15 14
37 37 H 1.00897 * 110.99841 * 279.11653 * 19 17 16
38 38 H 1.09000 * 109.47283 * 59.99980 * 20 19 17
39 39 H 1.09002 * 109.47562 * 299.99300 * 20 19 17
40 40 H 1.09007 * 109.46516 * 304.99789 * 21 20 19
41 41 H 1.09004 * 109.47113 * 185.00258 * 21 20 19
42 42 H 1.09002 * 109.47382 * 59.99956 * 23 22 21
43 43 H 1.09001 * 109.46938 * 299.99942 * 23 22 21
44 44 H 1.08997 * 115.55341 * 29.41760 * 24 23 22
45 45 H 1.09000 * 117.49888 * 0.02562 * 25 24 23
46 46 H 1.09005 * 117.49831 * 145.01661 * 25 24 23
47 47 H 1.08998 * 117.50075 * 214.97635 * 26 24 23
48 48 H 1.09004 * 117.49836 * 359.96930 * 26 24 23
49 49 H 1.09004 * 109.57939 * 113.80285 * 27 13 11
50 50 H 1.08997 * 109.58891 * 353.38052 * 27 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.4979 2.0463 -1.4001
5 1 1.4479 2.6527 0.6999
6 1 3.5479 1.4400 0.7000
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0001
9 16 1.1291 -2.7280 0.0005
10 6 2.5156 -3.8915 0.0005
11 6 1.9871 -5.3028 -0.0001
12 8 0.7908 -5.5023 0.0000
13 7 2.8437 -6.3432 0.0003
14 6 4.2955 -6.1176 0.0008
15 6 4.9146 -6.8924 1.1684
16 6 4.5074 -8.3644 1.0714
17 6 2.9845 -8.4816 1.1674
18 1 2.6448 -8.0519 2.1098
19 7 2.5968 -9.8972 1.1060
20 6 1.2993 -10.1164 1.7589
21 6 0.9305 -11.5990 1.6754
22 8 1.8688 -12.3667 2.4318
23 6 1.6139 -13.7727 2.4191
24 6 2.6740 -14.4908 3.2566
25 6 3.6035 -15.4674 2.5333
26 6 2.5095 -15.9978 3.4632
27 6 2.3435 -7.7248 0.0003
28 1 -0.4850 0.8401 -0.0004
29 1 3.1242 -3.7315 0.8906
30 1 3.1243 -3.7316 -0.8894
31 1 4.7206 -6.4710 -0.9386
32 1 4.4998 -5.0531 0.1167
33 1 6.0007 -6.8117 1.1234
34 1 4.5577 -6.4770 2.1107
35 1 4.9667 -8.9227 1.8871
36 1 4.8437 -8.7722 0.1181
37 1 2.5822 -10.2271 0.1526
38 1 0.5352 -9.5227 1.2572
39 1 1.3637 -9.8169 2.8049
40 1 0.9531 -11.9209 0.6342
41 1 -0.0707 -11.7477 2.0800
42 1 1.6509 -14.1395 1.3933
43 1 0.6268 -13.9668 2.8389
44 1 3.0936 -13.9128 4.0799
45 1 3.4600 -15.5980 1.4607
46 1 4.6346 -15.5320 2.8809
47 1 2.8213 -16.4113 4.4223
48 1 1.6458 -16.4776 3.0029
49 1 2.6092 -8.2094 -0.9392
50 1 1.2600 -7.7211 0.1183
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001207431609.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:37
Heat of formation + Delta-G solvation = -60.351730 kcal
Electronic energy + Delta-G solvation = -26960.286142 eV
Core-core repulsion = 23114.315134 eV
Total energy + Delta-G solvation = -3845.971008 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-40.06454 -38.83548 -37.78924 -36.91506 -35.30318 -32.50426 -32.42465 -31.13790
-29.41984 -27.79263 -26.50165 -25.57459 -24.96686 -23.00408 -22.79552 -22.13374
-21.03642 -20.77589 -19.07407 -17.69775 -17.32670 -16.78914 -16.49494 -16.17966
-15.66340 -15.49530 -15.01272 -14.81094 -14.78327 -14.56367 -14.46504 -14.05011
-13.73409 -13.51724 -13.33347 -13.19323 -13.02264 -12.81677 -12.53701 -12.26694
-11.96185 -11.90367 -11.69979 -11.47456 -11.35646 -11.07212 -11.05438 -11.02697
-10.93772 -10.85501 -10.76504 -10.65556 -10.60142 -9.81589 -9.78350 -9.41409
-9.07315 -8.89785 -8.29859 -8.23279 -6.51052 -6.22294 -3.93012 2.90152
3.03278 3.13996 3.21860 3.25239 3.29803 3.50553 3.56724 3.88924
4.19625 4.37809 4.47085 4.58212 4.61032 4.67831 4.83048 4.84263
4.88776 4.90739 4.91485 5.03339 5.11172 5.12959 5.13227 5.17852
5.20948 5.25616 5.31372 5.39637 5.46346 5.48294 5.60153 5.62479
5.65319 5.67415 5.69939 5.76547 5.81085 5.86406 5.89708 6.06642
6.11182 6.14930 6.51573 6.80580 6.96042 7.15479 7.54578 7.59059
8.34489 8.54061 9.23025 10.85146
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028239 B = 0.001683 C = 0.001624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 991.301758 B =16634.709802 C =17242.197699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.272 1.272
7 C -0.535 4.535
8 H 0.073 0.927
9 S -0.062 6.062
10 C -0.150 4.150
11 C 0.535 3.465
12 O -0.519 6.519
13 N -0.616 5.616
14 C 0.107 3.893
15 C -0.136 4.136
16 C -0.103 4.103
17 C 0.074 3.926
18 H 0.082 0.918
19 N -0.669 5.669
20 C 0.057 3.943
21 C 0.066 3.934
22 O -0.368 6.368
23 C 0.092 3.908
24 C -0.150 4.150
25 C -0.176 4.176
26 C -0.177 4.177
27 C 0.086 3.914
28 H 0.268 0.732
29 H 0.090 0.910
30 H 0.089 0.911
31 H 0.066 0.934
32 H 0.090 0.910
33 H 0.077 0.923
34 H 0.069 0.931
35 H 0.072 0.928
36 H 0.062 0.938
37 H 0.338 0.662
38 H 0.051 0.949
39 H 0.083 0.917
40 H 0.047 0.953
41 H 0.053 0.947
42 H 0.047 0.953
43 H 0.049 0.951
44 H 0.114 0.886
45 H 0.094 0.906
46 H 0.095 0.905
47 H 0.097 0.903
48 H 0.094 0.906
49 H 0.061 0.939
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.908 -28.656 3.374 30.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.135 4.135
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.683 4.683
8 H 0.091 0.909
9 S 0.165 5.835
10 C -0.300 4.300
11 C 0.323 3.677
12 O -0.394 6.394
13 N -0.353 5.353
14 C -0.017 4.017
15 C -0.174 4.174
16 C -0.142 4.142
17 C -0.037 4.037
18 H 0.101 0.899
19 N -0.300 5.300
20 C -0.073 4.073
21 C -0.011 4.011
22 O -0.287 6.287
23 C 0.015 3.985
24 C -0.168 4.168
25 C -0.213 4.213
26 C -0.214 4.214
27 C -0.039 4.039
28 H 0.078 0.922
29 H 0.108 0.892
30 H 0.107 0.893
31 H 0.084 0.916
32 H 0.108 0.892
33 H 0.096 0.904
34 H 0.088 0.912
35 H 0.091 0.909
36 H 0.081 0.919
37 H 0.157 0.843
38 H 0.069 0.931
39 H 0.101 0.899
40 H 0.066 0.934
41 H 0.072 0.928
42 H 0.065 0.935
43 H 0.067 0.933
44 H 0.132 0.868
45 H 0.113 0.887
46 H 0.114 0.886
47 H 0.116 0.884
48 H 0.112 0.888
49 H 0.080 0.920
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 7.461 -28.941 4.040 30.159
hybrid contribution 1.174 1.514 -0.862 2.101
sum 8.635 -27.426 3.178 28.928
Atomic orbital electron populations
1.70024 1.05961 1.27442 1.46858 1.24989 0.95024 0.99019 0.94516
0.86167 0.79422 0.81559 0.78353 1.20267 1.20743 1.19677 1.22860
0.94890 0.91614 1.58970 0.90932 1.85398 1.05047 0.96378 1.96704
1.23550 1.06453 0.95306 1.04731 1.20371 0.86194 0.86270 0.74882
1.90681 1.15252 1.85253 1.48204 1.48032 1.06520 1.05309 1.75432
1.21757 0.79815 1.01635 0.98471 1.21940 1.00742 0.95595 0.99160
1.21456 0.94366 0.95711 1.02621 1.21979 0.96068 0.87053 0.98597
0.89929 1.60598 1.29963 1.16935 1.22476 1.22056 0.90499 0.93690
1.01012 1.22514 0.91965 0.91494 0.95090 1.88006 1.52198 1.16495
1.72023 1.21967 0.96626 0.81929 0.97981 1.22122 1.00859 0.91475
1.02394 1.23064 0.96164 1.03670 0.98434 1.22985 1.01289 0.95416
1.01688 1.22283 1.00911 0.82392 0.98278 0.92191 0.89200 0.89264
0.91551 0.89155 0.90423 0.91247 0.90914 0.91910 0.84346 0.93088
0.89875 0.93448 0.92844 0.93462 0.93274 0.86829 0.88734 0.88610
0.88443 0.88770 0.92035 0.89299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
3 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16
4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16
8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16
9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16
10 C -0.15 -3.06 4.50 36.01 0.16 -2.90 16
11 C 0.53 10.29 7.72 -10.99 -0.08 10.20 16
12 O -0.52 -11.95 15.27 5.56 0.08 -11.87 16
13 N -0.62 -8.83 2.97 -172.78 -0.51 -9.34 16
14 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16
15 C -0.14 -1.25 6.08 -26.61 -0.16 -1.42 16
16 C -0.10 -0.95 5.49 -26.69 -0.15 -1.09 16
17 C 0.07 0.77 2.62 -67.61 -0.18 0.59 16
18 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16
19 N -0.67 -6.27 6.20 -106.61 -0.66 -6.93 16
20 C 0.06 0.52 5.87 -3.82 -0.02 0.50 16
21 C 0.07 0.54 6.22 37.16 0.23 0.77 16
22 O -0.37 -3.63 10.29 -35.23 -0.36 -3.99 16
23 C 0.09 0.70 6.22 37.16 0.23 0.93 16
24 C -0.15 -1.09 6.05 -90.62 -0.55 -1.64 16
25 C -0.18 -1.09 10.18 -26.70 -0.27 -1.36 16
26 C -0.18 -0.98 10.25 -26.70 -0.27 -1.26 16
27 C 0.09 1.05 5.69 -3.72 -0.02 1.03 16
28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
29 H 0.09 1.70 7.69 -51.92 -0.40 1.30 16
30 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16
31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
32 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16
33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.34 2.81 8.42 -39.29 -0.33 2.47 16
38 H 0.05 0.47 7.56 -51.93 -0.39 0.08 16
39 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16
40 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
42 H 0.05 0.32 7.88 -51.93 -0.41 -0.09 16
43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
44 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.09 0.54 8.03 -51.93 -0.42 0.13 16
46 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
47 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16
48 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
49 H 0.06 0.66 8.04 -51.93 -0.42 0.25 16
50 H 0.09 1.27 6.48 -51.93 -0.34 0.93 16
LS Contribution 415.27 15.07 6.26 6.26
Total: -1.00 -34.25 415.27 -11.47 -45.72
By element:
Atomic # 1 Polarization: 9.46 SS G_CDS: -8.86 Total: 0.60 kcal
Atomic # 6 Polarization: -6.54 SS G_CDS: -0.91 Total: -7.44 kcal
Atomic # 7 Polarization: -41.28 SS G_CDS: -0.44 Total: -41.72 kcal
Atomic # 8 Polarization: -15.59 SS G_CDS: -0.28 Total: -15.86 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal
Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -34.25 -11.47 -45.72 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207431609.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.632 kcal
(2) G-P(sol) polarization free energy of solvation -34.251 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds