Wall clock time and date at job start Sat Apr 11 2020 06:38:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31632 * 1
3 3 Si 1.86793 * 120.00406 * 2 1
4 4 H 1.48505 * 109.46997 * 270.00130 * 3 2 1
5 5 H 1.48502 * 109.47443 * 29.99576 * 3 2 1
6 6 H 1.48498 * 109.47191 * 150.00170 * 3 2 1
7 7 C 1.38799 * 119.99369 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99835 * 179.97438 * 7 2 1
9 9 S 1.76202 * 120.00275 * 0.02562 * 7 2 1
10 10 C 1.81005 * 99.99791 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.46842 * 180.02562 * 10 9 7
12 12 O 1.21281 * 120.00115 * 359.97438 * 11 10 9
13 13 N 1.34776 * 119.99912 * 180.02562 * 11 10 9
14 14 C 1.46920 * 120.63166 * 359.97438 * 13 11 10
15 15 C 1.53194 * 108.77730 * 126.41050 * 14 13 11
16 16 C 1.53041 * 109.30956 * 54.63772 * 15 14 13
17 17 C 1.53039 * 109.53783 * 298.63127 * 16 15 14
18 18 H 1.09007 * 109.52239 * 301.40151 * 17 16 15
19 19 N 1.46902 * 109.49955 * 181.32182 * 17 16 15
20 20 C 1.46894 * 110.99820 * 155.16238 * 19 17 16
21 21 C 1.53009 * 109.46764 * 180.02562 * 20 19 17
22 22 O 1.42899 * 109.47113 * 64.99856 * 21 20 19
23 23 C 1.42903 * 113.99629 * 180.02562 * 22 21 20
24 24 C 1.53000 * 109.46726 * 180.02562 * 23 22 21
25 25 C 1.53002 * 117.49654 * 243.74220 * 24 23 22
26 26 C 1.52999 * 117.49718 * 175.08876 * 24 23 22
27 27 C 1.46929 * 120.62811 * 179.97438 * 13 11 10
28 28 H 0.97007 * 119.99493 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.46849 * 60.00472 * 10 9 7
30 30 H 1.08995 * 109.47568 * 299.99762 * 10 9 7
31 31 H 1.08999 * 109.58613 * 246.19909 * 14 13 11
32 32 H 1.09002 * 109.58545 * 6.48257 * 14 13 11
33 33 H 1.09000 * 109.49671 * 174.58336 * 15 14 13
34 34 H 1.08994 * 109.50205 * 294.64906 * 15 14 13
35 35 H 1.08999 * 109.45789 * 178.61415 * 16 15 14
36 36 H 1.09000 * 109.46329 * 58.65650 * 16 15 14
37 37 H 1.00897 * 110.99841 * 279.11653 * 19 17 16
38 38 H 1.09000 * 109.47283 * 59.99980 * 20 19 17
39 39 H 1.09002 * 109.47562 * 299.99300 * 20 19 17
40 40 H 1.09007 * 109.46516 * 304.99789 * 21 20 19
41 41 H 1.09004 * 109.47113 * 185.00258 * 21 20 19
42 42 H 1.09002 * 109.47382 * 59.99956 * 23 22 21
43 43 H 1.09001 * 109.46938 * 299.99942 * 23 22 21
44 44 H 1.08997 * 115.55341 * 29.41760 * 24 23 22
45 45 H 1.09000 * 117.49888 * 0.02562 * 25 24 23
46 46 H 1.09005 * 117.49831 * 145.01661 * 25 24 23
47 47 H 1.08998 * 117.50075 * 214.97635 * 26 24 23
48 48 H 1.09004 * 117.49836 * 359.96930 * 26 24 23
49 49 H 1.09004 * 109.57939 * 113.80285 * 27 13 11
50 50 H 1.08997 * 109.58891 * 353.38052 * 27 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.4979 2.0463 -1.4001
5 1 1.4479 2.6527 0.6999
6 1 3.5479 1.4400 0.7000
7 6 2.0102 -1.2021 0.0005
8 1 3.0902 -1.2022 0.0001
9 16 1.1291 -2.7280 0.0005
10 6 2.5156 -3.8915 0.0005
11 6 1.9871 -5.3028 -0.0001
12 8 0.7908 -5.5023 0.0000
13 7 2.8437 -6.3432 0.0003
14 6 4.2955 -6.1176 0.0008
15 6 4.9146 -6.8924 1.1684
16 6 4.5074 -8.3644 1.0714
17 6 2.9845 -8.4816 1.1674
18 1 2.6448 -8.0519 2.1098
19 7 2.5968 -9.8972 1.1060
20 6 1.2993 -10.1164 1.7589
21 6 0.9305 -11.5990 1.6754
22 8 1.8688 -12.3667 2.4318
23 6 1.6139 -13.7727 2.4191
24 6 2.6740 -14.4908 3.2566
25 6 3.6035 -15.4674 2.5333
26 6 2.5095 -15.9978 3.4632
27 6 2.3435 -7.7248 0.0003
28 1 -0.4850 0.8401 -0.0004
29 1 3.1242 -3.7315 0.8906
30 1 3.1243 -3.7316 -0.8894
31 1 4.7206 -6.4710 -0.9386
32 1 4.4998 -5.0531 0.1167
33 1 6.0007 -6.8117 1.1234
34 1 4.5577 -6.4770 2.1107
35 1 4.9667 -8.9227 1.8871
36 1 4.8437 -8.7722 0.1181
37 1 2.5822 -10.2271 0.1526
38 1 0.5352 -9.5227 1.2572
39 1 1.3637 -9.8169 2.8049
40 1 0.9531 -11.9209 0.6342
41 1 -0.0707 -11.7477 2.0800
42 1 1.6509 -14.1395 1.3933
43 1 0.6268 -13.9668 2.8389
44 1 3.0936 -13.9128 4.0799
45 1 3.4600 -15.5980 1.4607
46 1 4.6346 -15.5320 2.8809
47 1 2.8213 -16.4113 4.4223
48 1 1.6458 -16.4776 3.0029
49 1 2.6092 -8.2094 -0.9392
50 1 1.2600 -7.7211 0.1183
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207431609.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:36
Heat of formation + Delta-G solvation = -82.916318 kcal
Electronic energy + Delta-G solvation = -26961.264616 eV
Core-core repulsion = 23114.315134 eV
Total energy + Delta-G solvation = -3846.949482 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.28113 -39.52106 -38.84921 -37.58650 -36.23235 -34.59432 -33.52956 -32.10346
-30.72849 -28.61239 -27.70021 -27.16745 -26.12818 -23.82785 -23.24377 -22.90971
-21.89667 -21.49076 -20.41972 -19.49287 -18.23263 -17.97619 -17.32555 -17.03065
-16.88685 -16.70749 -16.52295 -15.98200 -15.82271 -15.57345 -15.35235 -15.22062
-14.72183 -14.56815 -14.42871 -14.33689 -14.01505 -13.91189 -13.64715 -13.47758
-13.17605 -12.98624 -12.89588 -12.61976 -12.44453 -12.35822 -12.29750 -11.99493
-11.90173 -11.79324 -11.71147 -11.51470 -11.29549 -11.14914 -11.13797 -10.93703
-10.38491 -10.27904 -9.94002 -9.26811 -8.68919 -8.35413 -6.14201 1.23958
1.42336 1.44866 1.52580 1.56070 2.05305 2.26560 2.57978 2.98656
2.98921 3.09277 3.23795 3.61771 3.76407 3.87191 3.95177 3.98891
4.02077 4.05260 4.07168 4.20942 4.23318 4.23832 4.27277 4.36632
4.41783 4.49383 4.50136 4.58122 4.60519 4.69956 4.71661 4.77146
4.78636 4.81147 4.90703 4.95074 5.02707 5.11013 5.24874 5.26375
5.28974 5.37187 5.40920 5.47538 5.95919 6.18857 6.24670 6.31970
6.45659 7.05766 7.09632 8.73896
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.028239 B = 0.001683 C = 0.001624
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 991.301758 B =16634.709802 C =17242.197699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.014 3.986
3 Si 0.999 3.001
4 H -0.267 1.267
5 H -0.278 1.278
6 H -0.257 1.257
7 C -0.546 4.546
8 H 0.083 0.917
9 S -0.153 6.153
10 C -0.123 4.123
11 C 0.531 3.469
12 O -0.569 6.569
13 N -0.603 5.603
14 C 0.097 3.903
15 C -0.129 4.129
16 C -0.097 4.097
17 C 0.084 3.916
18 H 0.060 0.940
19 N -0.666 5.666
20 C 0.057 3.943
21 C 0.069 3.931
22 O -0.392 6.392
23 C 0.090 3.910
24 C -0.169 4.169
25 C -0.177 4.177
26 C -0.166 4.166
27 C 0.087 3.913
28 H 0.271 0.729
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.093 0.907
32 H 0.089 0.911
33 H 0.106 0.894
34 H 0.055 0.945
35 H 0.074 0.926
36 H 0.078 0.922
37 H 0.348 0.652
38 H 0.047 0.953
39 H 0.068 0.932
40 H 0.060 0.940
41 H 0.063 0.937
42 H 0.056 0.944
43 H 0.056 0.944
44 H 0.099 0.901
45 H 0.099 0.901
46 H 0.098 0.902
47 H 0.104 0.896
48 H 0.104 0.896
49 H 0.085 0.915
50 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.778 -29.760 2.858 32.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.191 4.191
3 Si 0.821 3.179
4 H -0.192 1.192
5 H -0.203 1.203
6 H -0.181 1.181
7 C -0.694 4.694
8 H 0.102 0.898
9 S 0.074 5.926
10 C -0.274 4.274
11 C 0.319 3.681
12 O -0.448 6.448
13 N -0.338 5.338
14 C -0.024 4.024
15 C -0.168 4.168
16 C -0.135 4.135
17 C -0.027 4.027
18 H 0.078 0.922
19 N -0.297 5.297
20 C -0.072 4.072
21 C -0.008 4.008
22 O -0.311 6.311
23 C 0.014 3.986
24 C -0.187 4.187
25 C -0.214 4.214
26 C -0.202 4.202
27 C -0.038 4.038
28 H 0.080 0.920
29 H 0.125 0.875
30 H 0.127 0.873
31 H 0.111 0.889
32 H 0.107 0.893
33 H 0.124 0.876
34 H 0.074 0.926
35 H 0.093 0.907
36 H 0.097 0.903
37 H 0.167 0.833
38 H 0.065 0.935
39 H 0.086 0.914
40 H 0.079 0.921
41 H 0.081 0.919
42 H 0.074 0.926
43 H 0.074 0.926
44 H 0.118 0.882
45 H 0.118 0.882
46 H 0.117 0.883
47 H 0.123 0.877
48 H 0.122 0.878
49 H 0.103 0.897
50 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 10.385 -30.095 3.522 32.031
hybrid contribution 0.333 1.692 -0.692 1.859
sum 10.718 -28.403 2.830 30.489
Atomic orbital electron populations
1.70192 1.08016 1.28610 1.47984 1.26134 0.95957 1.03322 0.93662
0.84944 0.78218 0.75930 0.78834 1.19243 1.20325 1.18110 1.23196
0.95351 0.91862 1.58957 0.89845 1.85590 1.10650 0.99340 1.97034
1.23364 1.03389 0.94244 1.06368 1.20188 0.85994 0.86789 0.75134
1.90663 1.17321 1.85816 1.50991 1.48057 1.07620 1.05001 1.73081
1.22109 0.77443 1.02207 1.00665 1.21918 1.02218 0.95071 0.97543
1.21424 0.92766 0.95767 1.03542 1.21859 0.97112 0.87207 0.96549
0.92162 1.60640 1.30031 1.15917 1.23088 1.22022 0.90396 0.94717
1.00076 1.22522 0.92113 0.90411 0.95779 1.87968 1.52910 1.17760
1.72488 1.22068 0.97071 0.80858 0.98589 1.22123 1.01690 0.92334
1.02548 1.23138 0.96411 1.03047 0.98836 1.23070 1.01294 0.93931
1.01949 1.22448 0.99674 0.81367 1.00267 0.91997 0.87506 0.87337
0.88894 0.89301 0.87596 0.92628 0.90728 0.90325 0.83311 0.93454
0.91359 0.92137 0.91885 0.92615 0.92625 0.88240 0.88245 0.88350
0.87711 0.87761 0.89683 0.91871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16
2 C 0.01 0.80 5.49 84.86 0.47 1.26 16
3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16
4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16
5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16
8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16
9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16
10 C -0.12 -4.99 4.50 71.24 0.32 -4.67 16
11 C 0.53 20.59 7.72 87.66 0.68 21.26 16
12 O -0.57 -27.28 15.27 -3.03 -0.05 -27.32 16
13 N -0.60 -16.59 2.97 -818.96 -2.43 -19.03 16
14 C 0.10 1.86 6.34 86.36 0.55 2.41 16
15 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16
16 C -0.10 -1.51 5.49 30.62 0.17 -1.34 16
17 C 0.08 1.66 2.62 44.98 0.12 1.77 16
18 H 0.06 1.48 7.80 -2.38 -0.02 1.46 16
19 N -0.67 -11.76 6.20 -491.20 -3.05 -14.81 16
20 C 0.06 1.05 5.87 86.31 0.51 1.56 16
21 C 0.07 1.06 6.22 71.99 0.45 1.51 16
22 O -0.39 -7.48 10.29 -148.98 -1.53 -9.01 16
23 C 0.09 1.29 6.22 71.98 0.45 1.73 16
24 C -0.17 -2.32 6.05 -10.79 -0.07 -2.39 16
25 C -0.18 -1.96 10.18 30.62 0.31 -1.65 16
26 C -0.17 -1.59 10.25 30.62 0.31 -1.28 16
27 C 0.09 2.04 5.69 86.35 0.49 2.54 16
28 H 0.27 15.51 8.31 -92.70 -0.77 14.73 16
29 H 0.11 3.96 7.69 -2.40 -0.02 3.94 16
30 H 0.11 3.97 7.94 -2.40 -0.02 3.96 16
31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.09 1.76 5.93 -2.39 -0.01 1.74 16
33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16
34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
37 H 0.35 5.11 8.42 -89.70 -0.75 4.36 16
38 H 0.05 0.90 7.56 -2.39 -0.02 0.88 16
39 H 0.07 1.45 8.06 -2.39 -0.02 1.43 16
40 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16
41 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16
42 H 0.06 0.68 7.88 -2.39 -0.02 0.66 16
43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16
45 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16
46 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16
47 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
48 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16
49 H 0.09 1.64 8.04 -2.38 -0.02 1.62 16
50 H 0.06 1.85 6.48 -2.39 -0.02 1.84 16
Total: -1.00 -77.20 415.27 -0.17 -77.37
By element:
Atomic # 1 Polarization: 22.58 SS G_CDS: 0.16 Total: 22.74 kcal
Atomic # 6 Polarization: -15.34 SS G_CDS: 5.58 Total: -9.76 kcal
Atomic # 7 Polarization: -84.61 SS G_CDS: -5.19 Total: -89.80 kcal
Atomic # 8 Polarization: -34.76 SS G_CDS: -1.58 Total: -36.34 kcal
Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal
Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal
Total: -77.20 -0.17 -77.37 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207431609.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.550 kcal
(2) G-P(sol) polarization free energy of solvation -77.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds