Wall clock time and date at job start Sat Apr 11 2020 06:39:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86801 * 120.00283 * 2 1
4 4 H 1.48497 * 109.47152 * 269.99852 * 3 2 1
5 5 H 1.48502 * 109.47092 * 29.99968 * 3 2 1
6 6 H 1.48508 * 109.46979 * 149.99822 * 3 2 1
7 7 C 1.38806 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00149 * 180.02562 * 7 2 1
9 9 S 1.76200 * 119.99777 * 0.02562 * 7 2 1
10 10 C 1.81004 * 99.99800 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.47094 * 179.97438 * 10 9 7
12 12 O 1.21288 * 119.99939 * 359.97438 * 11 10 9
13 13 N 1.34773 * 120.00108 * 179.97438 * 11 10 9
14 14 C 1.46504 * 120.00292 * 180.02562 * 13 11 10
15 15 H 1.09001 * 109.53017 * 35.09905 * 14 13 11
16 16 C 1.53119 * 109.50215 * 275.00234 * 14 13 11
17 17 C 1.53124 * 109.15776 * 182.40341 * 16 14 13
18 18 C 1.53038 * 109.27916 * 57.65236 * 17 16 14
19 19 N 1.46846 * 109.52163 * 300.82167 * 18 17 16
20 20 C 1.46906 * 110.99732 * 185.84338 * 19 18 17
21 21 C 1.52992 * 109.47246 * 75.78793 * 20 19 18
22 22 C 1.53176 * 109.54643 * 65.26097 * 21 20 19
23 23 C 1.53093 * 109.21999 * 176.81447 * 22 21 20
24 24 O 1.42910 * 109.40818 * 302.49298 * 23 22 21
25 25 C 1.42902 * 114.15624 * 61.05627 * 24 23 22
26 26 C 1.53086 * 109.41480 * 298.87440 * 25 24 23
27 27 C 1.46841 * 111.20188 * 61.74433 * 19 18 17
28 28 H 0.96998 * 119.99702 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.46981 * 59.99989 * 10 9 7
30 30 H 1.09001 * 109.47073 * 300.00136 * 10 9 7
31 31 H 0.97002 * 120.00191 * 0.02562 * 13 11 10
32 32 H 1.08998 * 109.52588 * 62.49764 * 16 14 13
33 33 H 1.08996 * 109.57446 * 302.33535 * 16 14 13
34 34 H 1.09002 * 109.50204 * 297.71051 * 17 16 14
35 35 H 1.08996 * 109.50163 * 177.59670 * 17 16 14
36 36 H 1.09001 * 109.45571 * 180.80423 * 18 17 16
37 37 H 1.09002 * 109.45859 * 60.83613 * 18 17 16
38 38 H 1.08999 * 109.46460 * 315.78646 * 20 19 18
39 39 H 1.09000 * 109.46856 * 195.79205 * 20 19 18
40 40 H 1.09007 * 109.62127 * 305.03545 * 21 20 19
41 41 H 1.09001 * 109.52084 * 296.75435 * 22 21 20
42 42 H 1.09002 * 109.52135 * 56.87580 * 22 21 20
43 43 H 1.08998 * 109.47985 * 62.40167 * 23 22 21
44 44 H 1.08994 * 109.48352 * 182.44154 * 23 22 21
45 45 H 1.09003 * 109.47703 * 178.88880 * 25 24 23
46 46 H 1.09001 * 109.49159 * 58.86603 * 25 24 23
47 47 H 1.09001 * 109.52297 * 297.69962 * 26 25 24
48 48 H 1.09003 * 109.57555 * 177.54552 * 26 25 24
49 49 H 1.09001 * 109.46290 * 58.26756 * 27 19 18
50 50 H 1.08995 * 109.46375 * 178.24604 * 27 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0463 -1.4000
5 1 1.4478 2.6527 0.7000
6 1 3.5479 1.4400 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0001
9 16 1.1292 -2.7280 -0.0019
10 6 2.5157 -3.8915 -0.0013
11 6 1.9872 -5.3028 -0.0018
12 8 0.7909 -5.5023 -0.0019
13 7 2.8439 -6.3432 -0.0020
14 6 2.3302 -7.7152 -0.0029
15 1 1.4155 -7.7614 -0.5940
16 6 2.0325 -8.1505 1.4346
17 6 1.5532 -9.6048 1.4301
18 6 2.6232 -10.4874 0.7833
19 7 2.8714 -10.0309 -0.5901
20 6 3.7913 -10.9387 -1.2885
21 6 3.0446 -12.2126 -1.6888
22 6 1.9635 -11.8707 -2.7187
23 6 1.2746 -13.1601 -3.1732
24 8 2.2501 -14.0558 -3.7102
25 6 3.2599 -14.4479 -2.7782
26 6 4.0281 -13.2096 -2.3093
27 6 3.3776 -8.6526 -0.6082
28 1 -0.4849 0.8400 -0.0004
29 1 3.1236 -3.7318 0.8892
30 1 3.1250 -3.7310 -0.8908
31 1 3.8007 -6.1836 -0.0015
32 1 1.2554 -7.5122 1.8550
33 1 2.9375 -8.0671 2.0362
34 1 0.6263 -9.6808 0.8616
35 1 1.3804 -9.9341 2.4547
36 1 2.2788 -11.5215 0.7657
37 1 3.5456 -10.4216 1.3603
38 1 4.6195 -11.1954 -0.6280
39 1 4.1776 -10.4480 -2.1818
40 1 2.5815 -12.6576 -0.8081
41 1 1.2282 -11.2045 -2.2674
42 1 2.4209 -11.3798 -3.5777
43 1 0.7821 -13.6289 -2.3213
44 1 0.5340 -12.9265 -3.9381
45 1 3.9485 -15.1425 -3.2593
46 1 2.7943 -14.9333 -1.9204
47 1 4.5275 -12.7468 -3.1606
48 1 4.7702 -13.5000 -1.5656
49 1 4.2965 -8.5954 -0.0247
50 1 3.5812 -8.3539 -1.6365
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001316936703.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:28
Heat of formation + Delta-G solvation = -98.597530 kcal
Electronic energy + Delta-G solvation = -27582.631112 eV
Core-core repulsion = 23735.001642 eV
Total energy + Delta-G solvation = -3847.629470 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.24742 -39.53402 -38.36938 -35.59513 -33.92989 -32.43999 -32.42661 -31.41319
-30.50736 -28.36360 -27.48254 -25.48396 -24.37309 -23.84661 -23.13148 -22.16079
-20.34836 -20.25270 -19.97223 -17.84100 -16.71848 -16.57465 -16.31406 -16.30166
-15.52727 -15.49499 -15.04956 -15.00533 -14.80682 -14.80269 -14.37816 -14.02452
-13.94099 -13.82741 -13.43567 -13.14028 -12.95273 -12.66487 -12.58549 -12.44415
-12.18159 -12.01439 -11.66972 -11.56569 -11.37097 -11.06835 -11.05223 -11.02406
-10.92121 -10.85817 -10.77054 -10.62539 -10.55935 -9.85282 -9.80828 -9.36984
-9.07012 -8.88085 -8.65085 -8.23310 -6.49707 -6.21652 -3.92057 2.94392
3.10269 3.22179 3.25118 3.29787 3.47931 3.55320 3.85507 4.20446
4.26069 4.42906 4.46199 4.55040 4.67284 4.69423 4.77228 4.86766
4.90984 4.97347 5.05116 5.08118 5.13495 5.15941 5.18689 5.23366
5.26505 5.34318 5.38822 5.42684 5.46873 5.49615 5.55689 5.61341
5.65248 5.73714 5.77142 5.89274 5.90626 5.92730 6.03049 6.13744
6.15383 6.22129 6.57046 6.73177 6.81034 6.86322 7.59535 7.71957
8.35185 8.63085 9.23657 10.85764
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.024971 B = 0.001770 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1121.050098 B =15819.651773 C =16059.898436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.272 1.272
7 C -0.536 4.536
8 H 0.072 0.928
9 S -0.059 6.059
10 C -0.154 4.154
11 C 0.534 3.466
12 O -0.515 6.515
13 N -0.736 5.736
14 C 0.152 3.848
15 H 0.096 0.904
16 C -0.133 4.133
17 C -0.114 4.114
18 C 0.054 3.946
19 N -0.532 5.532
20 C 0.063 3.937
21 C -0.083 4.083
22 C -0.142 4.142
23 C 0.058 3.942
24 O -0.386 6.386
25 C 0.063 3.937
26 C -0.152 4.152
27 C 0.053 3.947
28 H 0.268 0.732
29 H 0.089 0.911
30 H 0.089 0.911
31 H 0.396 0.604
32 H 0.074 0.926
33 H 0.058 0.942
34 H 0.074 0.926
35 H 0.069 0.931
36 H 0.075 0.925
37 H 0.032 0.968
38 H 0.037 0.963
39 H 0.075 0.925
40 H 0.071 0.929
41 H 0.087 0.913
42 H 0.068 0.932
43 H 0.048 0.952
44 H 0.093 0.907
45 H 0.091 0.909
46 H 0.048 0.952
47 H 0.072 0.928
48 H 0.070 0.930
49 H 0.036 0.964
50 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.200 -28.989 -1.353 30.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.684 4.684
8 H 0.090 0.910
9 S 0.167 5.833
10 C -0.304 4.304
11 C 0.320 3.680
12 O -0.389 6.389
13 N -0.390 5.390
14 C 0.046 3.954
15 H 0.115 0.885
16 C -0.171 4.171
17 C -0.152 4.152
18 C -0.073 4.073
19 N -0.256 5.256
20 C -0.065 4.065
21 C -0.101 4.101
22 C -0.179 4.179
23 C -0.018 4.018
24 O -0.305 6.305
25 C -0.014 4.014
26 C -0.191 4.191
27 C -0.076 4.076
28 H 0.078 0.922
29 H 0.107 0.893
30 H 0.107 0.893
31 H 0.229 0.771
32 H 0.093 0.907
33 H 0.077 0.923
34 H 0.093 0.907
35 H 0.087 0.913
36 H 0.093 0.907
37 H 0.051 0.949
38 H 0.055 0.945
39 H 0.093 0.907
40 H 0.090 0.910
41 H 0.106 0.894
42 H 0.086 0.914
43 H 0.066 0.934
44 H 0.111 0.889
45 H 0.109 0.891
46 H 0.066 0.934
47 H 0.091 0.909
48 H 0.089 0.911
49 H 0.055 0.945
50 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 7.570 -29.268 -1.792 30.284
hybrid contribution 3.344 1.542 0.810 3.771
sum 10.914 -27.726 -0.981 29.812
Atomic orbital electron populations
1.70015 1.05943 1.27446 1.46845 1.24992 0.95028 0.99018 0.94552
0.86171 0.79401 0.81593 0.78348 1.20270 1.20744 1.19725 1.22870
0.94902 0.91692 1.58953 0.90955 1.85399 1.04900 0.96278 1.96710
1.23536 1.06573 0.95459 1.04862 1.20282 0.86551 0.86183 0.74947
1.90705 1.15302 1.85520 1.47327 1.46015 1.09808 1.05299 1.77871
1.20800 0.97886 0.80303 0.96398 0.88548 1.21999 1.01805 0.96453
0.96882 1.21540 0.98960 0.94259 1.00456 1.22182 0.98053 0.99219
0.87884 1.61733 1.46309 1.01312 1.16250 1.22133 0.93027 0.93108
0.98268 1.21167 0.96025 0.94593 0.98359 1.22129 0.99016 0.97862
0.98917 1.22654 0.90640 0.89604 0.98942 1.87928 1.39348 1.64922
1.38312 1.22521 0.90242 0.95589 0.93067 1.22235 0.98551 0.96926
1.01343 1.22277 0.95714 0.88273 1.01312 0.92183 0.89306 0.89264
0.77085 0.90720 0.92287 0.90694 0.91260 0.90657 0.94933 0.94524
0.90670 0.91024 0.89424 0.91374 0.93407 0.88886 0.89059 0.93378
0.90915 0.91086 0.94539 0.90098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16
2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16
4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16
8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16
9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16
10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16
11 C 0.53 9.86 7.81 -10.99 -0.09 9.77 16
12 O -0.51 -11.58 15.53 5.55 0.09 -11.50 16
13 N -0.74 -9.69 5.08 -53.72 -0.27 -9.96 16
14 C 0.15 1.80 2.61 -67.85 -0.18 1.62 16
15 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16
16 C -0.13 -1.49 5.58 -26.61 -0.15 -1.63 16
17 C -0.11 -1.02 6.09 -26.65 -0.16 -1.19 16
18 C 0.05 0.42 5.29 -3.83 -0.02 0.40 16
19 N -0.53 -4.37 4.12 -234.68 -0.97 -5.34 16
20 C 0.06 0.43 4.40 -3.82 -0.02 0.41 16
21 C -0.08 -0.53 2.33 -90.44 -0.21 -0.74 16
22 C -0.14 -1.06 5.27 -26.59 -0.14 -1.20 16
23 C 0.06 0.43 6.85 37.21 0.25 0.69 16
24 O -0.39 -3.44 10.76 -35.23 -0.38 -3.82 16
25 C 0.06 0.40 6.84 37.20 0.25 0.65 16
26 C -0.15 -0.87 5.42 -26.59 -0.14 -1.02 16
27 C 0.05 0.48 4.90 -3.84 -0.02 0.46 16
28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16
30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16
31 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16
32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
36 H 0.08 0.51 6.65 -51.93 -0.35 0.17 16
37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
38 H 0.04 0.24 8.00 -51.93 -0.42 -0.18 16
39 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16
40 H 0.07 0.47 6.71 -51.93 -0.35 0.12 16
41 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16
42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
47 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
49 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
50 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16
LS Contribution 404.08 15.07 6.09 6.09
Total: -1.00 -33.87 404.08 -11.10 -44.97
By element:
Atomic # 1 Polarization: 9.02 SS G_CDS: -8.96 Total: 0.06 kcal
Atomic # 6 Polarization: -7.42 SS G_CDS: -0.20 Total: -7.62 kcal
Atomic # 7 Polarization: -40.23 SS G_CDS: -0.51 Total: -40.74 kcal
Atomic # 8 Polarization: -15.03 SS G_CDS: -0.29 Total: -15.32 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal
Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -33.87 -11.10 -44.97 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316936703.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.623 kcal
(2) G-P(sol) polarization free energy of solvation -33.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds