Wall clock time and date at job start Sat Apr 11 2020 06:39:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86801 * 120.00283 * 2 1
4 4 H 1.48497 * 109.47152 * 269.99852 * 3 2 1
5 5 H 1.48502 * 109.47092 * 29.99968 * 3 2 1
6 6 H 1.48508 * 109.46979 * 149.99822 * 3 2 1
7 7 C 1.38806 * 119.99913 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00149 * 180.02562 * 7 2 1
9 9 S 1.76200 * 119.99777 * 0.02562 * 7 2 1
10 10 C 1.81004 * 99.99800 * 180.02562 * 9 7 2
11 11 C 1.50697 * 109.47094 * 179.97438 * 10 9 7
12 12 O 1.21288 * 119.99939 * 359.97438 * 11 10 9
13 13 N 1.34773 * 120.00108 * 179.97438 * 11 10 9
14 14 C 1.46504 * 120.00292 * 180.02562 * 13 11 10
15 15 H 1.09001 * 109.53017 * 35.09905 * 14 13 11
16 16 C 1.53119 * 109.50215 * 275.00234 * 14 13 11
17 17 C 1.53124 * 109.15776 * 182.40341 * 16 14 13
18 18 C 1.53038 * 109.27916 * 57.65236 * 17 16 14
19 19 N 1.46846 * 109.52163 * 300.82167 * 18 17 16
20 20 C 1.46906 * 110.99732 * 185.84338 * 19 18 17
21 21 C 1.52992 * 109.47246 * 75.78793 * 20 19 18
22 22 C 1.53176 * 109.54643 * 65.26097 * 21 20 19
23 23 C 1.53093 * 109.21999 * 176.81447 * 22 21 20
24 24 O 1.42910 * 109.40818 * 302.49298 * 23 22 21
25 25 C 1.42902 * 114.15624 * 61.05627 * 24 23 22
26 26 C 1.53086 * 109.41480 * 298.87440 * 25 24 23
27 27 C 1.46841 * 111.20188 * 61.74433 * 19 18 17
28 28 H 0.96998 * 119.99702 * 0.02562 * 1 2 3
29 29 H 1.08998 * 109.46981 * 59.99989 * 10 9 7
30 30 H 1.09001 * 109.47073 * 300.00136 * 10 9 7
31 31 H 0.97002 * 120.00191 * 0.02562 * 13 11 10
32 32 H 1.08998 * 109.52588 * 62.49764 * 16 14 13
33 33 H 1.08996 * 109.57446 * 302.33535 * 16 14 13
34 34 H 1.09002 * 109.50204 * 297.71051 * 17 16 14
35 35 H 1.08996 * 109.50163 * 177.59670 * 17 16 14
36 36 H 1.09001 * 109.45571 * 180.80423 * 18 17 16
37 37 H 1.09002 * 109.45859 * 60.83613 * 18 17 16
38 38 H 1.08999 * 109.46460 * 315.78646 * 20 19 18
39 39 H 1.09000 * 109.46856 * 195.79205 * 20 19 18
40 40 H 1.09007 * 109.62127 * 305.03545 * 21 20 19
41 41 H 1.09001 * 109.52084 * 296.75435 * 22 21 20
42 42 H 1.09002 * 109.52135 * 56.87580 * 22 21 20
43 43 H 1.08998 * 109.47985 * 62.40167 * 23 22 21
44 44 H 1.08994 * 109.48352 * 182.44154 * 23 22 21
45 45 H 1.09003 * 109.47703 * 178.88880 * 25 24 23
46 46 H 1.09001 * 109.49159 * 58.86603 * 25 24 23
47 47 H 1.09001 * 109.52297 * 297.69962 * 26 25 24
48 48 H 1.09003 * 109.57555 * 177.54552 * 26 25 24
49 49 H 1.09001 * 109.46290 * 58.26756 * 27 19 18
50 50 H 1.08995 * 109.46375 * 178.24604 * 27 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4979 2.0463 -1.4000
5 1 1.4478 2.6527 0.7000
6 1 3.5479 1.4400 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2021 -0.0001
9 16 1.1292 -2.7280 -0.0019
10 6 2.5157 -3.8915 -0.0013
11 6 1.9872 -5.3028 -0.0018
12 8 0.7909 -5.5023 -0.0019
13 7 2.8439 -6.3432 -0.0020
14 6 2.3302 -7.7152 -0.0029
15 1 1.4155 -7.7614 -0.5940
16 6 2.0325 -8.1505 1.4346
17 6 1.5532 -9.6048 1.4301
18 6 2.6232 -10.4874 0.7833
19 7 2.8714 -10.0309 -0.5901
20 6 3.7913 -10.9387 -1.2885
21 6 3.0446 -12.2126 -1.6888
22 6 1.9635 -11.8707 -2.7187
23 6 1.2746 -13.1601 -3.1732
24 8 2.2501 -14.0558 -3.7102
25 6 3.2599 -14.4479 -2.7782
26 6 4.0281 -13.2096 -2.3093
27 6 3.3776 -8.6526 -0.6082
28 1 -0.4849 0.8400 -0.0004
29 1 3.1236 -3.7318 0.8892
30 1 3.1250 -3.7310 -0.8908
31 1 3.8007 -6.1836 -0.0015
32 1 1.2554 -7.5122 1.8550
33 1 2.9375 -8.0671 2.0362
34 1 0.6263 -9.6808 0.8616
35 1 1.3804 -9.9341 2.4547
36 1 2.2788 -11.5215 0.7657
37 1 3.5456 -10.4216 1.3603
38 1 4.6195 -11.1954 -0.6280
39 1 4.1776 -10.4480 -2.1818
40 1 2.5815 -12.6576 -0.8081
41 1 1.2282 -11.2045 -2.2674
42 1 2.4209 -11.3798 -3.5777
43 1 0.7821 -13.6289 -2.3213
44 1 0.5340 -12.9265 -3.9381
45 1 3.9485 -15.1425 -3.2593
46 1 2.7943 -14.9333 -1.9204
47 1 4.5275 -12.7468 -3.1606
48 1 4.7702 -13.5000 -1.5656
49 1 4.2965 -8.5954 -0.0247
50 1 3.5812 -8.3539 -1.6365
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001316936703.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:28
Heat of formation + Delta-G solvation = -122.121920 kcal
Electronic energy + Delta-G solvation = -27583.651206 eV
Core-core repulsion = 23735.001642 eV
Total energy + Delta-G solvation = -3848.649565 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.15492 -40.40361 -39.35003 -36.46341 -34.92130 -34.58561 -33.18739 -31.93681
-31.74430 -29.59787 -28.14264 -27.64898 -25.06196 -24.39717 -23.96423 -22.86459
-21.61218 -21.01347 -20.69228 -19.79777 -17.85589 -17.66435 -17.08368 -16.91221
-16.88186 -16.55921 -16.38381 -16.09706 -15.82574 -15.58044 -15.52224 -15.07425
-14.80266 -14.74584 -14.56994 -14.49621 -14.04188 -13.67770 -13.52000 -13.16887
-13.15423 -13.14360 -12.89547 -12.75507 -12.60978 -12.39414 -12.18978 -12.08686
-11.83795 -11.74439 -11.63048 -11.54833 -11.34524 -11.14576 -11.10338 -10.89809
-10.41310 -10.27651 -10.09569 -9.25988 -8.66992 -8.34869 -6.12992 1.26170
1.42252 1.46415 1.56797 1.61495 2.16947 2.27436 2.95005 2.99244
3.04091 3.32580 3.68836 3.71186 3.83193 3.93551 3.98914 3.99968
4.04554 4.16550 4.20442 4.29934 4.32170 4.34895 4.46320 4.50057
4.50511 4.54914 4.58028 4.66925 4.72012 4.77348 4.84227 4.86683
4.93323 4.95616 4.98466 5.04022 5.08010 5.21797 5.24159 5.33111
5.34324 5.41577 5.46094 5.50468 6.09021 6.13931 6.19571 6.33046
6.51227 7.06344 7.25762 8.74353
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.024971 B = 0.001770 C = 0.001743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1121.050098 B =15819.651773 C =16059.898436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.013 3.987
3 Si 0.999 3.001
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.258 1.258
7 C -0.547 4.547
8 H 0.083 0.917
9 S -0.152 6.152
10 C -0.129 4.129
11 C 0.536 3.464
12 O -0.563 6.563
13 N -0.710 5.710
14 C 0.152 3.848
15 H 0.064 0.936
16 C -0.128 4.128
17 C -0.110 4.110
18 C 0.059 3.941
19 N -0.543 5.543
20 C 0.067 3.933
21 C -0.078 4.078
22 C -0.137 4.137
23 C 0.057 3.943
24 O -0.409 6.409
25 C 0.056 3.944
26 C -0.146 4.146
27 C 0.063 3.937
28 H 0.271 0.729
29 H 0.109 0.891
30 H 0.110 0.890
31 H 0.415 0.585
32 H 0.039 0.961
33 H 0.074 0.926
34 H 0.059 0.941
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.044 0.956
38 H 0.050 0.950
39 H 0.073 0.927
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.056 0.944
43 H 0.055 0.945
44 H 0.092 0.908
45 H 0.102 0.898
46 H 0.056 0.944
47 H 0.066 0.934
48 H 0.089 0.911
49 H 0.056 0.944
50 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.478 -30.128 -0.855 33.017
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.192 4.192
3 Si 0.821 3.179
4 H -0.193 1.193
5 H -0.203 1.203
6 H -0.182 1.182
7 C -0.694 4.694
8 H 0.101 0.899
9 S 0.075 5.925
10 C -0.280 4.280
11 C 0.322 3.678
12 O -0.441 6.441
13 N -0.364 5.364
14 C 0.047 3.953
15 H 0.082 0.918
16 C -0.167 4.167
17 C -0.148 4.148
18 C -0.068 4.068
19 N -0.268 5.268
20 C -0.061 4.061
21 C -0.097 4.097
22 C -0.175 4.175
23 C -0.019 4.019
24 O -0.329 6.329
25 C -0.020 4.020
26 C -0.184 4.184
27 C -0.065 4.065
28 H 0.080 0.920
29 H 0.128 0.872
30 H 0.128 0.872
31 H 0.252 0.748
32 H 0.058 0.942
33 H 0.092 0.908
34 H 0.078 0.922
35 H 0.102 0.898
36 H 0.107 0.893
37 H 0.062 0.938
38 H 0.068 0.932
39 H 0.091 0.909
40 H 0.093 0.907
41 H 0.094 0.906
42 H 0.075 0.925
43 H 0.073 0.927
44 H 0.110 0.890
45 H 0.120 0.880
46 H 0.074 0.926
47 H 0.085 0.915
48 H 0.107 0.893
49 H 0.074 0.926
50 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 10.907 -30.453 -1.294 32.373
hybrid contribution 2.337 1.750 0.648 2.991
sum 13.243 -28.702 -0.645 31.617
Atomic orbital electron populations
1.70184 1.07986 1.28603 1.47987 1.26139 0.95974 1.03345 0.93749
0.84948 0.78199 0.75997 0.78793 1.19314 1.20302 1.18165 1.23209
0.95356 0.91997 1.58877 0.89883 1.85598 1.10583 0.99242 1.97049
1.23372 1.03538 0.94346 1.06776 1.20041 0.86247 0.86600 0.74882
1.90697 1.17429 1.86026 1.49977 1.45740 1.10217 1.04853 1.75543
1.20872 0.97788 0.79853 0.96804 0.91799 1.21937 1.01334 0.97328
0.96125 1.21512 0.98862 0.93056 1.01362 1.22161 0.97844 0.99359
0.87460 1.61689 1.47138 1.01113 1.16879 1.22121 0.93001 0.92714
0.98242 1.21137 0.95802 0.94720 0.98050 1.22050 0.99103 0.97534
0.98785 1.22681 0.90570 0.89511 0.99180 1.87896 1.40125 1.65181
1.39676 1.22713 0.90043 0.96144 0.93147 1.22188 0.98483 0.96282
1.01494 1.22129 0.94990 0.88065 1.01359 0.92000 0.87248 0.87185
0.74804 0.94199 0.90774 0.92239 0.89837 0.89323 0.93817 0.93192
0.90851 0.90651 0.90601 0.92497 0.92707 0.88977 0.87989 0.92555
0.91528 0.89297 0.92616 0.89960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16
2 C 0.01 0.72 5.49 84.86 0.47 1.19 16
3 Si 1.00 43.63 29.55 68.60 2.03 45.66 16
4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
7 C -0.55 -31.29 9.50 67.96 0.65 -30.64 16
8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16
9 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16
10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16
11 C 0.54 19.85 7.81 87.66 0.68 20.54 16
12 O -0.56 -26.44 15.53 -3.05 -0.05 -26.49 16
13 N -0.71 -17.82 5.08 -442.27 -2.25 -20.07 16
14 C 0.15 3.50 2.61 45.04 0.12 3.62 16
15 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16
16 C -0.13 -2.80 5.58 30.68 0.17 -2.63 16
17 C -0.11 -1.85 6.09 30.65 0.19 -1.66 16
18 C 0.06 0.76 5.29 86.33 0.46 1.21 16
19 N -0.54 -7.81 4.12 -896.38 -3.69 -11.50 16
20 C 0.07 0.74 4.40 86.30 0.38 1.12 16
21 C -0.08 -0.85 2.33 -10.68 -0.02 -0.87 16
22 C -0.14 -1.95 5.27 30.68 0.16 -1.79 16
23 C 0.06 0.82 6.85 72.01 0.49 1.31 16
24 O -0.41 -6.95 10.76 -148.98 -1.60 -8.55 16
25 C 0.06 0.60 6.84 72.01 0.49 1.10 16
26 C -0.15 -1.33 5.42 30.68 0.17 -1.17 16
27 C 0.06 1.00 4.90 86.33 0.42 1.42 16
28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16
30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16
31 H 0.42 7.34 8.60 -92.71 -0.80 6.54 16
32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
36 H 0.09 0.94 6.65 -2.39 -0.02 0.92 16
37 H 0.04 0.49 8.14 -2.39 -0.02 0.48 16
38 H 0.05 0.45 8.00 -2.39 -0.02 0.43 16
39 H 0.07 0.86 7.79 -2.39 -0.02 0.84 16
40 H 0.08 0.79 6.71 -2.38 -0.02 0.77 16
41 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16
42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
46 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
50 H 0.08 1.30 7.93 -2.39 -0.02 1.29 16
Total: -1.00 -76.74 404.08 -1.07 -77.80
By element:
Atomic # 1 Polarization: 20.55 SS G_CDS: 0.11 Total: 20.66 kcal
Atomic # 6 Polarization: -17.18 SS G_CDS: 5.26 Total: -11.92 kcal
Atomic # 7 Polarization: -81.86 SS G_CDS: -5.65 Total: -87.51 kcal
Atomic # 8 Polarization: -33.39 SS G_CDS: -1.65 Total: -35.04 kcal
Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal
Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal
Total: -76.74 -1.07 -77.80 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316936703.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.321 kcal
(2) G-P(sol) polarization free energy of solvation -76.735 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds