Wall clock time and date at job start Sat Apr 11 2020 06:39:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46561 * 2 1
4 4 C 1.52991 * 109.47447 * 120.00164 * 2 1 3
5 5 C 1.50703 * 109.47195 * 174.99981 * 4 2 1
6 6 O 1.21277 * 120.00147 * 0.02562 * 5 4 2
7 7 N 1.34773 * 120.00103 * 179.97438 * 5 4 2
8 8 C 1.46496 * 120.00308 * 180.02562 * 7 5 4
9 9 H 1.09005 * 109.48624 * 34.95060 * 8 7 5
10 10 C 1.52572 * 109.49546 * 155.00195 * 8 7 5
11 11 C 1.47090 * 114.32442 * 205.00092 * 10 8 7
12 12 C 1.54859 * 110.32716 * 297.19500 * 11 10 8
13 13 N 1.44582 * 109.59744 * 71.26572 * 12 11 10
14 14 C 1.34775 * 118.64042 * 89.25793 * 13 12 11
15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12
16 16 C 1.50708 * 119.99957 * 359.97438 * 14 13 12
17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13
18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14
19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16
20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16
21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18
24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18
25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18
26 26 C 1.47595 * 122.71481 * 269.53084 * 13 12 11
27 27 C 1.50879 * 109.50763 * 274.89777 * 8 7 5
28 28 H 1.08996 * 109.47433 * 299.99438 * 1 2 3
29 29 H 1.09002 * 109.47465 * 60.00162 * 1 2 3
30 30 H 1.09007 * 109.46922 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46989 * 240.00558 * 2 1 3
32 32 H 1.09007 * 109.46835 * 180.02562 * 3 2 1
33 33 H 1.08996 * 109.47530 * 300.00035 * 3 2 1
34 34 H 1.09001 * 109.47013 * 60.00573 * 3 2 1
35 35 H 1.09006 * 109.47400 * 55.00381 * 4 2 1
36 36 H 1.08998 * 109.47542 * 295.00104 * 4 2 1
37 37 H 0.97002 * 120.00242 * 0.02562 * 7 5 4
38 38 H 1.08995 * 108.50893 * 83.74517 * 10 8 7
39 39 H 1.09005 * 108.50413 * 326.25289 * 10 8 7
40 40 H 1.09001 * 109.32296 * 176.93086 * 11 10 8
41 41 H 1.09001 * 109.33046 * 57.46084 * 11 10 8
42 42 H 1.09008 * 109.44788 * 311.23351 * 12 11 10
43 43 H 1.08999 * 109.45168 * 191.30768 * 12 11 10
44 44 H 1.09005 * 109.46512 * 60.00633 * 16 14 13
45 45 H 1.08991 * 109.47135 * 300.00153 * 16 14 13
46 46 H 0.97001 * 119.99662 * 359.97438 * 21 20 18
47 47 H 1.09001 * 108.94797 * 162.55609 * 26 13 12
48 48 H 1.08998 * 108.95582 * 281.19272 * 26 13 12
49 49 H 1.09000 * 109.36761 * 268.32455 * 27 8 7
50 50 H 1.09000 * 109.36980 * 28.07080 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2491
5 6 3.5420 -0.8293 1.1887
6 8 4.1451 -0.3739 0.2402
7 7 4.2151 -1.4312 2.1892
8 6 5.6751 -1.5358 2.1308
9 1 6.0846 -0.6457 1.6532
10 6 6.2339 -1.6574 3.5453
11 6 7.6243 -1.1994 3.6889
12 6 8.5698 -2.0720 2.8271
13 7 8.3612 -1.7762 1.4273
14 6 9.0851 -0.7908 0.8605
15 8 8.9298 -0.5216 -0.3119
16 6 10.0869 -0.0225 1.6836
17 16 10.8908 1.2240 0.6464
18 6 11.9782 1.9499 1.8276
19 1 11.9916 1.5859 2.8443
20 6 12.8174 2.9894 1.4514
21 7 12.8007 3.4334 0.2123
22 14 13.9706 3.7585 2.7036
23 1 14.7543 4.8407 2.0556
24 1 13.1778 4.3251 3.8242
25 1 14.8961 2.7217 3.2266
26 6 7.3841 -2.5049 0.5951
27 6 6.0612 -2.7575 1.3339
28 1 -0.3634 0.5137 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 3.1299 1.4427 -0.0005
33 1 1.6765 1.9565 -0.8899
34 1 1.6766 1.9564 0.8901
35 1 1.6055 -1.7199 1.2950
36 1 1.7517 -0.1584 2.1369
37 1 3.7328 -1.7952 2.9481
38 1 6.1805 -2.7026 3.8498
39 1 5.6056 -1.0723 4.2170
40 1 7.9213 -1.2707 4.7353
41 1 7.6973 -0.1609 3.3659
42 1 8.3592 -3.1257 3.0107
43 1 9.6048 -1.8574 3.0931
44 1 10.8377 -0.7088 2.0754
45 1 9.5762 0.4688 2.5117
46 1 12.2021 3.0337 -0.4379
47 1 7.1814 -1.9230 -0.3041
48 1 7.8120 -3.4644 0.3048
49 1 6.1769 -3.6067 2.0074
50 1 5.2794 -2.9767 0.6067
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001065781967.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:26
Heat of formation + Delta-G solvation = -95.823242 kcal
Electronic energy + Delta-G solvation = -28448.094727 eV
Core-core repulsion = 24600.585559 eV
Total energy + Delta-G solvation = -3847.509168 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.68554 -39.70317 -37.67626 -35.87875 -34.93556 -33.12461 -32.49590 -32.29446
-29.36172 -28.34470 -27.31136 -26.57103 -25.10231 -24.72248 -22.12851 -21.34433
-20.84140 -19.98002 -18.92012 -18.14704 -17.30989 -17.00486 -16.58496 -16.27237
-15.81410 -15.25808 -14.80886 -14.57567 -14.48494 -14.24650 -14.12068 -13.85556
-13.82627 -13.51444 -13.30077 -12.87329 -12.67919 -12.61065 -12.46526 -12.36171
-12.15810 -11.97811 -11.87689 -11.75026 -11.48473 -11.37169 -11.14983 -11.09058
-10.95167 -10.93851 -10.89629 -10.86291 -10.16153 -9.83577 -9.52603 -9.39457
-9.29577 -8.98819 -8.51234 -8.17443 -6.63483 -6.59290 -3.96731 2.48875
2.86044 2.91783 3.02217 3.34348 3.38989 3.49183 3.59314 4.26587
4.30577 4.42349 4.48276 4.51911 4.62204 4.76458 4.81273 4.89586
4.99149 5.01114 5.15256 5.17643 5.23731 5.24954 5.25274 5.32428
5.35420 5.40779 5.46273 5.50278 5.55276 5.65948 5.69546 5.71752
5.72920 5.80674 5.86953 5.88681 5.92701 5.97187 6.05545 6.10703
6.13613 6.24583 6.37398 6.69758 7.28252 7.51402 7.93786 8.08659
8.52648 8.53285 9.30279 10.84664
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013383 B = 0.002556 C = 0.002360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2091.782011 B =10952.280150 C =11863.310195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.082 4.082
3 C -0.155 4.155
4 C -0.136 4.136
5 C 0.507 3.493
6 O -0.524 6.524
7 N -0.732 5.732
8 C 0.146 3.854
9 H 0.094 0.906
10 C -0.120 4.120
11 C -0.141 4.141
12 C 0.110 3.890
13 N -0.614 5.614
14 C 0.527 3.473
15 O -0.513 6.513
16 C -0.127 4.127
17 S -0.118 6.118
18 C -0.606 4.606
19 H 0.065 0.935
20 C 0.035 3.965
21 N -0.884 5.884
22 Si 1.084 2.916
23 H -0.278 1.278
24 H -0.285 1.285
25 H -0.285 1.285
26 C 0.117 3.883
27 C -0.136 4.136
28 H 0.054 0.946
29 H 0.058 0.942
30 H 0.053 0.947
31 H 0.078 0.922
32 H 0.076 0.924
33 H 0.052 0.948
34 H 0.046 0.954
35 H 0.090 0.910
36 H 0.091 0.909
37 H 0.396 0.604
38 H 0.065 0.935
39 H 0.066 0.934
40 H 0.081 0.919
41 H 0.071 0.929
42 H 0.077 0.923
43 H 0.084 0.916
44 H 0.091 0.909
45 H 0.091 0.909
46 H 0.278 0.722
47 H 0.093 0.907
48 H 0.061 0.939
49 H 0.067 0.933
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.337 -15.226 9.769 29.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.100 4.100
3 C -0.212 4.212
4 C -0.176 4.176
5 C 0.294 3.706
6 O -0.399 6.399
7 N -0.384 5.384
8 C 0.041 3.959
9 H 0.112 0.888
10 C -0.158 4.158
11 C -0.180 4.180
12 C -0.014 4.014
13 N -0.350 5.350
14 C 0.314 3.686
15 O -0.387 6.387
16 C -0.278 4.278
17 S 0.108 5.892
18 C -0.754 4.754
19 H 0.083 0.917
20 C -0.176 4.176
21 N -0.518 5.518
22 Si 0.910 3.090
23 H -0.203 1.203
24 H -0.212 1.212
25 H -0.212 1.212
26 C -0.006 4.006
27 C -0.175 4.175
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.096 0.904
32 H 0.095 0.905
33 H 0.072 0.928
34 H 0.066 0.934
35 H 0.109 0.891
36 H 0.109 0.891
37 H 0.230 0.770
38 H 0.084 0.916
39 H 0.084 0.916
40 H 0.099 0.901
41 H 0.090 0.910
42 H 0.095 0.905
43 H 0.103 0.897
44 H 0.109 0.891
45 H 0.110 0.890
46 H 0.091 0.909
47 H 0.112 0.888
48 H 0.079 0.921
49 H 0.085 0.915
50 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -21.986 -13.339 7.495 26.786
hybrid contribution -1.258 -1.811 1.971 2.958
sum -23.245 -15.150 9.466 29.316
Atomic orbital electron populations
1.21864 0.95018 1.01560 1.02034 1.20868 0.94959 0.97102 0.97115
1.21974 1.03430 0.94788 1.01049 1.21784 0.91953 1.02797 1.01093
1.20785 0.90201 0.77292 0.82357 1.90756 1.70189 1.46217 1.32715
1.46225 1.07588 1.60625 1.23948 1.20458 0.79356 0.99871 0.96194
0.88765 1.20681 0.97380 1.02137 0.95630 1.21268 0.94619 1.01271
1.00817 1.21585 1.00085 0.99328 0.80422 1.47693 1.40123 1.36713
1.10466 1.20401 0.81132 0.79089 0.87949 1.90703 1.66026 1.65499
1.16438 1.23380 0.99759 1.01783 1.02849 1.84876 1.48345 1.38964
1.17005 1.23681 1.27965 1.25437 0.98342 0.91687 1.26046 0.97731
0.93938 0.99879 1.70793 1.36895 1.41036 1.03092 0.83338 0.75430
0.76280 0.73977 1.20290 1.21173 1.21152 1.21602 0.87498 0.96796
0.94679 1.22100 0.97530 0.97863 1.00013 0.92702 0.92326 0.92801
0.90382 0.90511 0.92844 0.93439 0.89121 0.89055 0.76993 0.91628
0.91562 0.90052 0.90984 0.90493 0.89733 0.89073 0.89038 0.90943
0.88824 0.92072 0.91480 0.90354
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16
2 C -0.08 -0.70 2.57 -90.62 -0.23 -0.93 16
3 C -0.16 -1.59 8.93 37.16 0.33 -1.26 16
4 C -0.14 -0.96 5.17 -27.89 -0.14 -1.11 16
5 C 0.51 5.36 7.37 -10.99 -0.08 5.28 16
6 O -0.52 -8.13 13.63 5.56 0.08 -8.05 16
7 N -0.73 -6.09 4.93 -55.06 -0.27 -6.36 16
8 C 0.15 1.50 2.06 -69.22 -0.14 1.35 16
9 H 0.09 1.42 6.91 -51.93 -0.36 1.06 16
10 C -0.12 -0.95 4.69 -29.79 -0.14 -1.09 16
11 C -0.14 -1.32 5.62 -28.59 -0.16 -1.48 16
12 C 0.11 1.15 5.17 -4.09 -0.02 1.13 16
13 N -0.61 -8.76 2.25 -172.75 -0.39 -9.15 16
14 C 0.53 10.32 7.64 -10.98 -0.08 10.24 16
15 O -0.51 -12.25 15.14 5.55 0.08 -12.17 16
16 C -0.13 -2.63 4.65 36.01 0.17 -2.46 16
17 S -0.12 -3.27 19.60 -107.50 -2.11 -5.38 16
18 C -0.61 -17.67 9.50 30.94 0.29 -17.37 16
19 H 0.06 1.80 7.80 -52.49 -0.41 1.39 16
20 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16
21 N -0.88 -27.95 13.67 55.49 0.76 -27.19 16
22 Si 1.08 25.17 29.92 -169.99 -5.09 20.08 16
23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
24 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16
25 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16
26 C 0.12 1.51 6.07 -3.13 -0.02 1.50 16
27 C -0.14 -1.33 5.38 -27.48 -0.15 -1.48 16
28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.05 0.29 8.14 -51.92 -0.42 -0.14 16
31 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16
32 H 0.08 1.03 5.95 -51.92 -0.31 0.72 16
33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16
37 H 0.40 1.96 8.60 -40.82 -0.35 1.61 16
38 H 0.07 0.40 7.36 -51.93 -0.38 0.01 16
39 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16
40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
41 H 0.07 0.87 7.27 -51.93 -0.38 0.50 16
42 H 0.08 0.62 8.07 -51.92 -0.42 0.20 16
43 H 0.08 0.92 6.26 -51.93 -0.32 0.59 16
44 H 0.09 1.75 7.30 -51.91 -0.38 1.37 16
45 H 0.09 1.77 7.08 -51.92 -0.37 1.40 16
46 H 0.28 9.01 7.12 -40.82 -0.29 8.72 16
47 H 0.09 1.53 6.96 -51.93 -0.36 1.17 16
48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
49 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16
50 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16
LS Contribution 401.08 15.07 6.04 6.04
Total: -1.00 -37.61 401.08 -9.57 -47.18
By element:
Atomic # 1 Polarization: 10.89 SS G_CDS: -8.55 Total: 2.34 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -0.13 Total: -7.35 kcal
Atomic # 7 Polarization: -42.80 SS G_CDS: 0.10 Total: -42.70 kcal
Atomic # 8 Polarization: -20.38 SS G_CDS: 0.16 Total: -20.22 kcal
Atomic # 14 Polarization: 25.17 SS G_CDS: -5.09 Total: 20.08 kcal
Atomic # 16 Polarization: -3.27 SS G_CDS: -2.11 Total: -5.38 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -37.61 -9.57 -47.18 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001065781967.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.644 kcal
(2) G-P(sol) polarization free energy of solvation -37.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.823 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds