Wall clock time and date at job start Sat Apr 11 2020 06:39:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53006 * 109.46561 * 2 1
4 4 C 1.52991 * 109.47447 * 120.00164 * 2 1 3
5 5 C 1.50703 * 109.47195 * 174.99981 * 4 2 1
6 6 O 1.21277 * 120.00147 * 0.02562 * 5 4 2
7 7 N 1.34773 * 120.00103 * 179.97438 * 5 4 2
8 8 C 1.46496 * 120.00308 * 180.02562 * 7 5 4
9 9 H 1.09005 * 109.48624 * 34.95060 * 8 7 5
10 10 C 1.52572 * 109.49546 * 155.00195 * 8 7 5
11 11 C 1.47090 * 114.32442 * 205.00092 * 10 8 7
12 12 C 1.54859 * 110.32716 * 297.19500 * 11 10 8
13 13 N 1.44582 * 109.59744 * 71.26572 * 12 11 10
14 14 C 1.34775 * 118.64042 * 89.25793 * 13 12 11
15 15 O 1.21284 * 120.00295 * 180.02562 * 14 13 12
16 16 C 1.50708 * 119.99957 * 359.97438 * 14 13 12
17 17 S 1.80998 * 109.47052 * 180.02562 * 16 14 13
18 18 C 1.76199 * 100.00013 * 180.02562 * 17 16 14
19 19 H 1.07991 * 119.99794 * 0.02562 * 18 17 16
20 20 C 1.38798 * 119.99771 * 180.02562 * 18 17 16
21 21 N 1.31633 * 120.00311 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 119.99653 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18
24 24 H 1.48508 * 109.47016 * 299.99635 * 22 20 18
25 25 H 1.48495 * 109.47483 * 59.99992 * 22 20 18
26 26 C 1.47595 * 122.71481 * 269.53084 * 13 12 11
27 27 C 1.50879 * 109.50763 * 274.89777 * 8 7 5
28 28 H 1.08996 * 109.47433 * 299.99438 * 1 2 3
29 29 H 1.09002 * 109.47465 * 60.00162 * 1 2 3
30 30 H 1.09007 * 109.46922 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46989 * 240.00558 * 2 1 3
32 32 H 1.09007 * 109.46835 * 180.02562 * 3 2 1
33 33 H 1.08996 * 109.47530 * 300.00035 * 3 2 1
34 34 H 1.09001 * 109.47013 * 60.00573 * 3 2 1
35 35 H 1.09006 * 109.47400 * 55.00381 * 4 2 1
36 36 H 1.08998 * 109.47542 * 295.00104 * 4 2 1
37 37 H 0.97002 * 120.00242 * 0.02562 * 7 5 4
38 38 H 1.08995 * 108.50893 * 83.74517 * 10 8 7
39 39 H 1.09005 * 108.50413 * 326.25289 * 10 8 7
40 40 H 1.09001 * 109.32296 * 176.93086 * 11 10 8
41 41 H 1.09001 * 109.33046 * 57.46084 * 11 10 8
42 42 H 1.09008 * 109.44788 * 311.23351 * 12 11 10
43 43 H 1.08999 * 109.45168 * 191.30768 * 12 11 10
44 44 H 1.09005 * 109.46512 * 60.00633 * 16 14 13
45 45 H 1.08991 * 109.47135 * 300.00153 * 16 14 13
46 46 H 0.97001 * 119.99662 * 359.97438 * 21 20 18
47 47 H 1.09001 * 108.94797 * 162.55609 * 26 13 12
48 48 H 1.08998 * 108.95582 * 281.19272 * 26 13 12
49 49 H 1.09000 * 109.36761 * 268.32455 * 27 8 7
50 50 H 1.09000 * 109.36980 * 28.07080 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2491
5 6 3.5420 -0.8293 1.1887
6 8 4.1451 -0.3739 0.2402
7 7 4.2151 -1.4312 2.1892
8 6 5.6751 -1.5358 2.1308
9 1 6.0846 -0.6457 1.6532
10 6 6.2339 -1.6574 3.5453
11 6 7.6243 -1.1994 3.6889
12 6 8.5698 -2.0720 2.8271
13 7 8.3612 -1.7762 1.4273
14 6 9.0851 -0.7908 0.8605
15 8 8.9298 -0.5216 -0.3119
16 6 10.0869 -0.0225 1.6836
17 16 10.8908 1.2240 0.6464
18 6 11.9782 1.9499 1.8276
19 1 11.9916 1.5859 2.8443
20 6 12.8174 2.9894 1.4514
21 7 12.8007 3.4334 0.2123
22 14 13.9706 3.7585 2.7036
23 1 14.7543 4.8407 2.0556
24 1 13.1778 4.3251 3.8242
25 1 14.8961 2.7217 3.2266
26 6 7.3841 -2.5049 0.5951
27 6 6.0612 -2.7575 1.3339
28 1 -0.3634 0.5137 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 3.1299 1.4427 -0.0005
33 1 1.6765 1.9565 -0.8899
34 1 1.6766 1.9564 0.8901
35 1 1.6055 -1.7199 1.2950
36 1 1.7517 -0.1584 2.1369
37 1 3.7328 -1.7952 2.9481
38 1 6.1805 -2.7026 3.8498
39 1 5.6056 -1.0723 4.2170
40 1 7.9213 -1.2707 4.7353
41 1 7.6973 -0.1609 3.3659
42 1 8.3592 -3.1257 3.0107
43 1 9.6048 -1.8574 3.0931
44 1 10.8377 -0.7088 2.0754
45 1 9.5762 0.4688 2.5117
46 1 12.2021 3.0337 -0.4379
47 1 7.1814 -1.9230 -0.3041
48 1 7.8120 -3.4644 0.3048
49 1 6.1769 -3.6067 2.0074
50 1 5.2794 -2.9767 0.6067
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001065781967.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:25
Heat of formation + Delta-G solvation = -122.050321 kcal
Electronic energy + Delta-G solvation = -28449.232018 eV
Core-core repulsion = 24600.585559 eV
Total energy + Delta-G solvation = -3848.646460 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.71169 -40.80774 -38.81397 -36.69754 -35.95827 -34.76165 -34.03158 -33.32052
-30.79134 -29.18308 -27.99639 -27.49922 -27.09304 -25.91890 -23.22811 -22.09919
-21.71833 -20.69516 -20.62098 -19.80335 -18.35222 -18.07382 -17.74046 -17.34165
-16.67919 -16.50732 -16.45432 -15.73740 -15.62106 -15.45230 -15.25762 -15.02336
-14.72547 -14.64947 -14.47271 -14.27690 -14.07853 -13.93126 -13.47583 -13.39844
-13.35618 -13.06836 -12.83060 -12.74799 -12.74233 -12.38041 -12.13259 -12.01921
-11.95998 -11.78058 -11.70292 -11.67235 -11.60990 -11.54351 -11.10616 -10.97118
-10.71247 -10.33131 -10.15459 -9.69875 -8.94321 -8.90911 -6.30072 1.15535
1.45156 1.50463 1.60015 1.68764 1.79926 2.00481 2.19554 2.33507
3.01094 3.08539 3.48031 3.66661 3.75874 3.77822 3.87070 3.92607
3.99162 4.02601 4.05345 4.13897 4.25778 4.31726 4.34597 4.45128
4.57121 4.63382 4.67833 4.68653 4.70239 4.75749 4.81538 4.85332
4.92358 5.00287 5.06462 5.06785 5.11380 5.19406 5.28443 5.31982
5.39727 5.48179 5.57019 5.59030 5.62022 6.11748 6.21185 6.61998
7.04433 7.06145 7.36646 8.48830
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.013383 B = 0.002556 C = 0.002360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2091.782011 B =10952.280150 C =11863.310195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.083 4.083
3 C -0.154 4.154
4 C -0.127 4.127
5 C 0.498 3.502
6 O -0.585 6.585
7 N -0.714 5.714
8 C 0.145 3.855
9 H 0.035 0.965
10 C -0.116 4.116
11 C -0.137 4.137
12 C 0.096 3.904
13 N -0.594 5.594
14 C 0.521 3.479
15 O -0.571 6.571
16 C -0.098 4.098
17 S -0.208 6.208
18 C -0.609 4.609
19 H 0.077 0.923
20 C -0.022 4.022
21 N -0.914 5.914
22 Si 1.138 2.862
23 H -0.281 1.281
24 H -0.262 1.262
25 H -0.260 1.260
26 C 0.115 3.885
27 C -0.123 4.123
28 H 0.067 0.933
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.052 0.948
32 H 0.037 0.963
33 H 0.049 0.951
34 H 0.062 0.938
35 H 0.124 0.876
36 H 0.116 0.884
37 H 0.419 0.581
38 H 0.105 0.895
39 H 0.079 0.921
40 H 0.113 0.887
41 H 0.033 0.967
42 H 0.120 0.880
43 H 0.084 0.916
44 H 0.113 0.887
45 H 0.107 0.893
46 H 0.259 0.741
47 H 0.045 0.955
48 H 0.083 0.917
49 H 0.111 0.889
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.036 -18.102 14.577 34.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.102 4.102
3 C -0.212 4.212
4 C -0.166 4.166
5 C 0.287 3.713
6 O -0.465 6.465
7 N -0.367 5.367
8 C 0.039 3.961
9 H 0.054 0.946
10 C -0.153 4.153
11 C -0.176 4.176
12 C -0.026 4.026
13 N -0.327 5.327
14 C 0.309 3.691
15 O -0.450 6.450
16 C -0.249 4.249
17 S 0.019 5.981
18 C -0.757 4.757
19 H 0.096 0.904
20 C -0.224 4.224
21 N -0.549 5.549
22 Si 0.955 3.045
23 H -0.206 1.206
24 H -0.187 1.187
25 H -0.185 1.185
26 C -0.007 4.007
27 C -0.162 4.162
28 H 0.086 0.914
29 H 0.072 0.928
30 H 0.088 0.912
31 H 0.071 0.929
32 H 0.056 0.944
33 H 0.068 0.932
34 H 0.081 0.919
35 H 0.142 0.858
36 H 0.134 0.866
37 H 0.256 0.744
38 H 0.123 0.877
39 H 0.098 0.902
40 H 0.131 0.869
41 H 0.052 0.948
42 H 0.138 0.862
43 H 0.102 0.898
44 H 0.131 0.869
45 H 0.125 0.875
46 H 0.070 0.930
47 H 0.064 0.936
48 H 0.101 0.899
49 H 0.129 0.871
50 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -23.749 -16.298 12.393 31.356
hybrid contribution -0.830 -1.009 0.483 1.393
sum -24.579 -17.307 12.875 32.702
Atomic orbital electron populations
1.21802 0.92677 1.02782 1.02477 1.20857 0.96754 0.95510 0.97125
1.21943 1.00857 0.96732 1.01630 1.21812 0.88959 1.04794 1.01044
1.21544 0.91792 0.76286 0.81709 1.90758 1.71627 1.48804 1.35277
1.46041 1.06867 1.59728 1.24088 1.20348 0.80437 0.97539 0.97733
0.94638 1.20657 0.96263 1.04762 0.93639 1.21272 0.95485 0.98725
1.02069 1.22050 1.00648 1.02176 0.77700 1.47693 1.38440 1.34403
1.12188 1.20305 0.81571 0.80116 0.87131 1.90684 1.67984 1.67578
1.18784 1.23238 1.00109 1.00010 1.01543 1.85201 1.49795 1.42450
1.20643 1.23996 1.27606 1.25374 0.98679 0.90431 1.27932 0.99256
0.94423 1.00819 1.70916 1.37679 1.42174 1.04158 0.82716 0.73859
0.75986 0.71925 1.20618 1.18673 1.18450 1.21711 0.89147 0.96304
0.93566 1.22043 0.94953 0.98987 1.00194 0.91359 0.92829 0.91156
0.92919 0.94423 0.93161 0.91945 0.85812 0.86594 0.74358 0.87697
0.90210 0.86873 0.94765 0.86167 0.89806 0.86865 0.87517 0.93032
0.93626 0.89854 0.87108 0.91070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16
2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.43 16
3 C -0.15 -3.36 8.93 71.98 0.64 -2.72 16
4 C -0.13 -1.53 5.17 29.85 0.15 -1.38 16
5 C 0.50 10.48 7.37 87.66 0.65 11.13 16
6 O -0.59 -19.84 13.63 -3.02 -0.04 -19.88 16
7 N -0.71 -10.50 4.93 -446.52 -2.20 -12.70 16
8 C 0.14 2.78 2.06 44.16 0.09 2.87 16
9 H 0.04 1.13 6.91 -2.38 -0.02 1.12 16
10 C -0.12 -1.34 4.69 28.61 0.13 -1.21 16
11 C -0.14 -2.13 5.62 29.39 0.17 -1.97 16
12 C 0.10 1.70 5.17 87.37 0.45 2.16 16
13 N -0.59 -16.71 2.25 -818.84 -1.84 -18.55 16
14 C 0.52 21.37 7.64 87.66 0.67 22.04 16
15 O -0.57 -29.64 15.14 -3.04 -0.05 -29.68 16
16 C -0.10 -4.14 4.65 71.24 0.33 -3.81 16
17 S -0.21 -12.08 19.60 -56.49 -1.11 -13.19 16
18 C -0.61 -36.04 9.50 67.95 0.65 -35.39 16
19 H 0.08 4.25 7.80 -2.92 -0.02 4.23 16
20 C -0.02 -1.29 5.49 84.86 0.47 -0.82 16
21 N -0.91 -59.91 13.67 21.65 0.30 -59.61 16
22 Si 1.14 50.04 29.92 68.60 2.05 52.09 16
23 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16
24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
26 C 0.12 2.98 6.07 86.38 0.52 3.51 16
27 C -0.12 -2.16 5.38 30.11 0.16 -1.99 16
28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16
31 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16
32 H 0.04 1.12 5.95 -2.38 -0.01 1.11 16
33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
35 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16
36 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
37 H 0.42 2.44 8.60 -92.71 -0.80 1.64 16
38 H 0.10 0.51 7.36 -2.39 -0.02 0.49 16
39 H 0.08 0.78 8.04 -2.38 -0.02 0.76 16
40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16
41 H 0.03 0.80 7.27 -2.39 -0.02 0.79 16
42 H 0.12 1.20 8.07 -2.38 -0.02 1.18 16
43 H 0.08 1.54 6.26 -2.39 -0.01 1.53 16
44 H 0.11 4.26 7.30 -2.39 -0.02 4.25 16
45 H 0.11 4.17 7.08 -2.40 -0.02 4.15 16
46 H 0.26 17.77 7.12 -92.71 -0.66 17.11 16
47 H 0.05 1.64 6.96 -2.39 -0.02 1.62 16
48 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
49 H 0.11 1.04 7.32 -2.39 -0.02 1.03 16
50 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16
Total: -1.00 -93.72 401.08 3.07 -90.65
By element:
Atomic # 1 Polarization: 20.48 SS G_CDS: 0.24 Total: 20.72 kcal
Atomic # 6 Polarization: -15.57 SS G_CDS: 5.72 Total: -9.85 kcal
Atomic # 7 Polarization: -87.11 SS G_CDS: -3.75 Total: -90.86 kcal
Atomic # 8 Polarization: -49.48 SS G_CDS: -0.09 Total: -49.57 kcal
Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal
Atomic # 16 Polarization: -12.08 SS G_CDS: -1.11 Total: -13.19 kcal
Total: -93.72 3.07 -90.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001065781967.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.399 kcal
(2) G-P(sol) polarization free energy of solvation -93.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.120 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.050 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds