Wall clock time and date at job start Sat Apr 11 2020 06:39:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53004 * 109.47158 * 2 1
4 4 C 1.53003 * 109.46845 * 179.97438 * 3 2 1
5 5 C 1.50699 * 109.46848 * 179.97438 * 4 3 2
6 6 O 1.21288 * 120.00158 * 359.97438 * 5 4 3
7 7 N 1.34777 * 120.00049 * 179.97438 * 5 4 3
8 8 C 1.46921 * 120.62828 * 354.22547 * 7 5 4
9 9 C 1.53198 * 108.77501 * 126.11567 * 8 7 5
10 10 C 1.53041 * 109.31296 * 54.63276 * 9 8 7
11 11 H 1.08992 * 109.46054 * 178.62844 * 10 9 8
12 12 N 1.46506 * 109.46006 * 58.65361 * 10 9 8
13 13 C 1.34777 * 119.99728 * 85.00081 * 12 10 9
14 14 O 1.21281 * 120.00001 * 359.97438 * 13 12 10
15 15 C 1.50696 * 120.00180 * 180.02562 * 13 12 10
16 16 S 1.80996 * 109.47626 * 179.97438 * 15 13 12
17 17 C 1.76192 * 100.00460 * 179.97438 * 16 15 13
18 18 H 1.08010 * 119.99951 * 359.97438 * 17 16 15
19 19 C 1.38795 * 120.00502 * 179.97438 * 17 16 15
20 20 N 1.31629 * 119.99776 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 120.00264 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.47585 * 0.02562 * 21 19 17
23 23 H 1.48507 * 109.47038 * 120.00167 * 21 19 17
24 24 H 1.48498 * 109.47236 * 239.99708 * 21 19 17
25 25 C 1.53046 * 109.53646 * 298.63596 * 10 9 8
26 26 C 1.46926 * 120.62706 * 173.94485 * 7 5 4
27 27 H 1.08996 * 109.58950 * 114.10163 * 26 7 5
28 28 C 1.52994 * 109.58954 * 353.66917 * 26 7 5
29 29 H 1.09000 * 109.47322 * 300.00220 * 1 2 3
30 30 H 1.08996 * 109.47035 * 60.00257 * 1 2 3
31 31 H 1.09003 * 109.46973 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47322 * 239.99780 * 2 1 3
33 33 H 1.09004 * 109.46881 * 119.99418 * 2 1 3
34 34 H 1.09000 * 109.47184 * 59.99695 * 3 2 1
35 35 H 1.09004 * 109.46750 * 299.99498 * 3 2 1
36 36 H 1.09000 * 109.46988 * 59.99624 * 4 3 2
37 37 H 1.09004 * 109.47068 * 299.99341 * 4 3 2
38 38 H 1.09000 * 109.58494 * 245.90151 * 8 7 5
39 39 H 1.08995 * 109.59089 * 6.18641 * 8 7 5
40 40 H 1.09001 * 109.49977 * 174.58422 * 9 8 7
41 41 H 1.08997 * 109.49705 * 294.64905 * 9 8 7
42 42 H 0.96998 * 119.99933 * 265.00424 * 12 10 9
43 43 H 1.08996 * 109.47120 * 300.00591 * 15 13 12
44 44 H 1.09006 * 109.46664 * 59.99682 * 15 13 12
45 45 H 0.97001 * 120.00399 * 179.97438 * 20 19 17
46 46 H 1.08998 * 109.49351 * 181.31363 * 25 10 9
47 47 H 1.08991 * 109.49609 * 301.41470 * 25 10 9
48 48 H 1.08997 * 109.46916 * 65.72951 * 28 26 7
49 49 H 1.09001 * 109.46970 * 185.72761 * 28 26 7
50 50 H 1.08994 * 109.47246 * 305.72671 * 28 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 6 4.0724 2.8632 0.0000
6 8 3.2842 3.7852 -0.0013
7 7 5.3974 3.1095 0.0009
8 6 6.3631 2.0098 0.1298
9 6 7.3538 2.0843 -1.0364
10 6 7.9881 3.4766 -1.0734
11 1 8.7114 3.5246 -1.8873
12 7 8.6665 3.7379 0.1985
13 6 9.9299 3.3088 0.3890
14 8 10.5049 2.7060 -0.4924
15 6 10.6276 3.5770 1.6975
16 16 12.2976 2.8810 1.6446
17 6 12.8662 3.3275 3.2514
18 1 12.2175 3.8718 3.9219
19 6 14.1477 2.9799 3.6556
20 7 14.9381 2.3162 2.8386
21 14 14.7508 3.4539 5.3587
22 1 13.6787 4.1890 6.0767
23 1 15.1033 2.2273 6.1182
24 1 15.9497 4.3215 5.2357
25 6 6.8995 4.5291 -1.2963
26 6 5.9037 4.4823 -0.1330
27 1 6.4044 4.7787 0.7887
28 6 4.7391 5.4332 -0.4163
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 1.6766 1.9564 0.8900
35 1 1.6767 1.9563 -0.8901
36 1 3.9337 0.9284 -0.8891
37 1 3.9330 0.9288 0.8909
38 1 6.9011 2.1046 1.0730
39 1 5.8363 1.0559 0.1039
40 1 8.1323 1.3334 -0.9010
41 1 6.8280 1.8985 -1.9729
42 1 8.2064 4.2197 0.9036
43 1 10.6869 4.6526 1.8638
44 1 10.0669 3.1141 2.5097
45 1 15.8339 2.0735 3.1208
46 1 7.3547 5.5183 -1.3458
47 1 6.3779 4.3209 -2.2303
48 1 4.0780 5.4659 0.4496
49 1 5.1263 6.4324 -0.6159
50 1 4.1836 5.0787 -1.2844
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001074840674.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:35
Heat of formation + Delta-G solvation = -83.915525 kcal
Electronic energy + Delta-G solvation = -27946.687889 eV
Core-core repulsion = 24099.695078 eV
Total energy + Delta-G solvation = -3846.992811 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.06278 -39.41959 -37.58001 -35.77933 -34.38189 -33.30609 -32.45688 -31.64571
-30.57309 -28.87562 -27.57851 -25.53283 -25.38017 -24.51644 -22.50005 -21.54122
-21.18037 -20.17388 -18.83640 -17.91901 -17.06515 -16.65342 -16.41390 -16.24764
-15.90971 -15.32129 -14.98711 -14.82906 -14.32050 -14.29911 -14.18040 -13.94758
-13.88604 -13.83992 -13.24392 -13.12864 -12.77998 -12.70254 -12.54824 -12.48324
-12.20610 -11.96386 -11.82266 -11.67501 -11.53806 -11.38039 -11.31386 -11.13370
-11.08770 -11.04404 -10.96133 -10.92828 -10.76822 -9.83268 -9.44485 -9.29636
-9.11016 -9.02921 -8.77730 -8.26693 -6.53123 -6.24690 -3.95247 2.37760
2.65605 2.99414 3.03669 3.19484 3.26283 3.30724 3.67263 4.13177
4.17685 4.41362 4.45338 4.51029 4.56716 4.62791 4.77443 4.82652
4.88507 4.92672 5.01333 5.10382 5.11024 5.11601 5.14243 5.26150
5.33374 5.44672 5.45520 5.50051 5.54657 5.56744 5.58350 5.64697
5.68893 5.77095 5.83259 5.87649 5.88174 5.89076 5.96674 6.00812
6.10094 6.12918 6.41811 6.59233 7.14413 7.57187 7.64299 7.95502
8.32612 8.55920 9.21037 10.82752
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016634 B = 0.002070 C = 0.001992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1682.890405 B =13525.230183 C =14050.655300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.126 4.126
3 C -0.103 4.103
4 C -0.144 4.144
5 C 0.515 3.485
6 O -0.535 6.535
7 N -0.610 5.610
8 C 0.107 3.893
9 C -0.147 4.147
10 C 0.147 3.853
11 H 0.093 0.907
12 N -0.735 5.735
13 C 0.534 3.466
14 O -0.516 6.516
15 C -0.155 4.155
16 S -0.059 6.059
17 C -0.535 4.535
18 H 0.073 0.927
19 C 0.073 3.927
20 N -0.867 5.867
21 Si 0.918 3.082
22 H -0.272 1.272
23 H -0.280 1.280
24 H -0.280 1.280
25 C -0.138 4.138
26 C 0.142 3.858
27 H 0.070 0.930
28 C -0.137 4.137
29 H 0.054 0.946
30 H 0.054 0.946
31 H 0.053 0.947
32 H 0.061 0.939
33 H 0.062 0.938
34 H 0.068 0.932
35 H 0.068 0.932
36 H 0.092 0.908
37 H 0.092 0.908
38 H 0.074 0.926
39 H 0.087 0.913
40 H 0.087 0.913
41 H 0.074 0.926
42 H 0.396 0.604
43 H 0.089 0.911
44 H 0.088 0.912
45 H 0.268 0.732
46 H 0.083 0.917
47 H 0.081 0.919
48 H 0.079 0.921
49 H 0.045 0.955
50 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.079 -0.528 -7.080 27.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.164 4.164
3 C -0.141 4.141
4 C -0.184 4.184
5 C 0.304 3.696
6 O -0.413 6.413
7 N -0.344 5.344
8 C -0.015 4.015
9 C -0.186 4.186
10 C 0.042 3.958
11 H 0.111 0.889
12 N -0.390 5.390
13 C 0.320 3.680
14 O -0.390 6.390
15 C -0.305 4.305
16 S 0.167 5.833
17 C -0.684 4.684
18 H 0.091 0.909
19 C -0.136 4.136
20 N -0.503 5.503
21 Si 0.745 3.255
22 H -0.196 1.196
23 H -0.206 1.206
24 H -0.205 1.205
25 C -0.177 4.177
26 C 0.039 3.961
27 H 0.088 0.912
28 C -0.194 4.194
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.072 0.928
32 H 0.080 0.920
33 H 0.081 0.919
34 H 0.087 0.913
35 H 0.087 0.913
36 H 0.110 0.890
37 H 0.110 0.890
38 H 0.092 0.908
39 H 0.105 0.895
40 H 0.105 0.895
41 H 0.093 0.907
42 H 0.230 0.770
43 H 0.107 0.893
44 H 0.107 0.893
45 H 0.078 0.922
46 H 0.102 0.898
47 H 0.100 0.900
48 H 0.098 0.902
49 H 0.063 0.937
50 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -25.355 -1.125 -8.585 26.792
hybrid contribution -0.212 1.104 2.455 2.700
sum -25.566 -0.021 -6.130 26.291
Atomic orbital electron populations
1.21756 0.95708 1.01554 1.01968 1.21555 0.96142 0.96610 1.02047
1.21372 0.92682 0.96590 1.03487 1.21796 0.98052 0.94289 1.04252
1.20718 0.81633 0.91673 0.75544 1.90740 1.55635 1.45299 1.49621
1.48242 1.05642 1.07700 1.72832 1.21774 0.90657 0.89633 0.99475
1.22314 0.98966 0.98668 0.98684 1.20813 0.93685 0.93499 0.87807
0.88917 1.46181 1.14999 1.60567 1.17272 1.20312 0.80605 0.77920
0.89182 1.90700 1.64945 1.39242 1.44122 1.23540 1.04981 1.05341
0.96658 1.85382 1.02896 1.73370 1.21630 1.22907 1.02330 1.42636
1.00492 0.90897 1.24990 0.95616 0.94654 0.98328 1.70023 1.08176
1.36542 1.35522 0.86120 0.78721 0.78346 0.82328 1.19624 1.20562
1.20549 1.22314 0.96110 0.99997 0.99272 1.21250 0.95372 0.81607
0.97888 0.91163 1.22182 0.96468 0.96460 1.04255 0.92684 0.92706
0.92772 0.91987 0.91950 0.91277 0.91309 0.88973 0.89004 0.90774
0.89505 0.89477 0.90701 0.76964 0.89285 0.89328 0.92222 0.89848
0.90036 0.90224 0.93665 0.91724
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16
2 C -0.13 -0.72 5.93 -26.73 -0.16 -0.88 16
3 C -0.10 -0.74 4.50 -26.73 -0.12 -0.86 16
4 C -0.14 -0.98 4.06 -27.88 -0.11 -1.09 16
5 C 0.52 4.91 7.50 -10.99 -0.08 4.83 16
6 O -0.54 -6.55 11.55 5.55 0.06 -6.48 16
7 N -0.61 -5.31 2.97 -165.22 -0.49 -5.80 16
8 C 0.11 0.86 6.09 -3.71 -0.02 0.84 16
9 C -0.15 -1.36 5.77 -26.61 -0.15 -1.51 16
10 C 0.15 1.53 2.78 -67.88 -0.19 1.35 16
11 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16
12 N -0.73 -8.84 4.26 -53.76 -0.23 -9.07 16
13 C 0.53 9.22 7.81 -10.99 -0.09 9.13 16
14 O -0.52 -10.94 15.52 5.56 0.09 -10.85 16
15 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16
16 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16
17 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16
18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16
19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
20 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16
21 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16
22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
25 C -0.14 -1.15 5.07 -26.61 -0.13 -1.29 16
26 C 0.14 1.24 3.20 -67.60 -0.22 1.03 16
27 H 0.07 0.60 6.64 -51.93 -0.34 0.25 16
28 C -0.14 -1.31 7.61 37.15 0.28 -1.02 16
29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16
35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16
36 H 0.09 0.51 7.93 -51.93 -0.41 0.10 16
37 H 0.09 0.52 7.70 -51.93 -0.40 0.12 16
38 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16
39 H 0.09 0.53 5.92 -51.93 -0.31 0.23 16
40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
42 H 0.40 3.94 6.87 -40.82 -0.28 3.66 16
43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16
44 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16
45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
46 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
48 H 0.08 0.90 6.54 -51.93 -0.34 0.56 16
49 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16
50 H 0.06 0.70 6.95 -51.93 -0.36 0.34 16
LS Contribution 404.26 15.07 6.09 6.09
Total: -1.00 -33.93 404.26 -9.88 -43.82
By element:
Atomic # 1 Polarization: 9.20 SS G_CDS: -8.70 Total: 0.50 kcal
Atomic # 6 Polarization: -5.28 SS G_CDS: -0.21 Total: -5.49 kcal
Atomic # 7 Polarization: -39.98 SS G_CDS: 0.01 Total: -39.97 kcal
Atomic # 8 Polarization: -17.49 SS G_CDS: 0.15 Total: -17.34 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal
Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -33.93 -9.88 -43.82 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074840674.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.100 kcal
(2) G-P(sol) polarization free energy of solvation -33.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds