Wall clock time and date at job start Sat Apr 11 2020 06:39:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53004 * 109.47158 * 2 1
4 4 C 1.53003 * 109.46845 * 179.97438 * 3 2 1
5 5 C 1.50699 * 109.46848 * 179.97438 * 4 3 2
6 6 O 1.21288 * 120.00158 * 359.97438 * 5 4 3
7 7 N 1.34777 * 120.00049 * 179.97438 * 5 4 3
8 8 C 1.46921 * 120.62828 * 354.22547 * 7 5 4
9 9 C 1.53198 * 108.77501 * 126.11567 * 8 7 5
10 10 C 1.53041 * 109.31296 * 54.63276 * 9 8 7
11 11 H 1.08992 * 109.46054 * 178.62844 * 10 9 8
12 12 N 1.46506 * 109.46006 * 58.65361 * 10 9 8
13 13 C 1.34777 * 119.99728 * 85.00081 * 12 10 9
14 14 O 1.21281 * 120.00001 * 359.97438 * 13 12 10
15 15 C 1.50696 * 120.00180 * 180.02562 * 13 12 10
16 16 S 1.80996 * 109.47626 * 179.97438 * 15 13 12
17 17 C 1.76192 * 100.00460 * 179.97438 * 16 15 13
18 18 H 1.08010 * 119.99951 * 359.97438 * 17 16 15
19 19 C 1.38795 * 120.00502 * 179.97438 * 17 16 15
20 20 N 1.31629 * 119.99776 * 359.97438 * 19 17 16
21 21 Si 1.86795 * 120.00264 * 179.97438 * 19 17 16
22 22 H 1.48497 * 109.47585 * 0.02562 * 21 19 17
23 23 H 1.48507 * 109.47038 * 120.00167 * 21 19 17
24 24 H 1.48498 * 109.47236 * 239.99708 * 21 19 17
25 25 C 1.53046 * 109.53646 * 298.63596 * 10 9 8
26 26 C 1.46926 * 120.62706 * 173.94485 * 7 5 4
27 27 H 1.08996 * 109.58950 * 114.10163 * 26 7 5
28 28 C 1.52994 * 109.58954 * 353.66917 * 26 7 5
29 29 H 1.09000 * 109.47322 * 300.00220 * 1 2 3
30 30 H 1.08996 * 109.47035 * 60.00257 * 1 2 3
31 31 H 1.09003 * 109.46973 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47322 * 239.99780 * 2 1 3
33 33 H 1.09004 * 109.46881 * 119.99418 * 2 1 3
34 34 H 1.09000 * 109.47184 * 59.99695 * 3 2 1
35 35 H 1.09004 * 109.46750 * 299.99498 * 3 2 1
36 36 H 1.09000 * 109.46988 * 59.99624 * 4 3 2
37 37 H 1.09004 * 109.47068 * 299.99341 * 4 3 2
38 38 H 1.09000 * 109.58494 * 245.90151 * 8 7 5
39 39 H 1.08995 * 109.59089 * 6.18641 * 8 7 5
40 40 H 1.09001 * 109.49977 * 174.58422 * 9 8 7
41 41 H 1.08997 * 109.49705 * 294.64905 * 9 8 7
42 42 H 0.96998 * 119.99933 * 265.00424 * 12 10 9
43 43 H 1.08996 * 109.47120 * 300.00591 * 15 13 12
44 44 H 1.09006 * 109.46664 * 59.99682 * 15 13 12
45 45 H 0.97001 * 120.00399 * 179.97438 * 20 19 17
46 46 H 1.08998 * 109.49351 * 181.31363 * 25 10 9
47 47 H 1.08991 * 109.49609 * 301.41470 * 25 10 9
48 48 H 1.08997 * 109.46916 * 65.72951 * 28 26 7
49 49 H 1.09001 * 109.46970 * 185.72761 * 28 26 7
50 50 H 1.08994 * 109.47246 * 305.72671 * 28 26 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 6 4.0724 2.8632 0.0000
6 8 3.2842 3.7852 -0.0013
7 7 5.3974 3.1095 0.0009
8 6 6.3631 2.0098 0.1298
9 6 7.3538 2.0843 -1.0364
10 6 7.9881 3.4766 -1.0734
11 1 8.7114 3.5246 -1.8873
12 7 8.6665 3.7379 0.1985
13 6 9.9299 3.3088 0.3890
14 8 10.5049 2.7060 -0.4924
15 6 10.6276 3.5770 1.6975
16 16 12.2976 2.8810 1.6446
17 6 12.8662 3.3275 3.2514
18 1 12.2175 3.8718 3.9219
19 6 14.1477 2.9799 3.6556
20 7 14.9381 2.3162 2.8386
21 14 14.7508 3.4539 5.3587
22 1 13.6787 4.1890 6.0767
23 1 15.1033 2.2273 6.1182
24 1 15.9497 4.3215 5.2357
25 6 6.8995 4.5291 -1.2963
26 6 5.9037 4.4823 -0.1330
27 1 6.4044 4.7787 0.7887
28 6 4.7391 5.4332 -0.4163
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5138 0.8901
34 1 1.6766 1.9564 0.8900
35 1 1.6767 1.9563 -0.8901
36 1 3.9337 0.9284 -0.8891
37 1 3.9330 0.9288 0.8909
38 1 6.9011 2.1046 1.0730
39 1 5.8363 1.0559 0.1039
40 1 8.1323 1.3334 -0.9010
41 1 6.8280 1.8985 -1.9729
42 1 8.2064 4.2197 0.9036
43 1 10.6869 4.6526 1.8638
44 1 10.0669 3.1141 2.5097
45 1 15.8339 2.0735 3.1208
46 1 7.3547 5.5183 -1.3458
47 1 6.3779 4.3209 -2.2303
48 1 4.0780 5.4659 0.4496
49 1 5.1263 6.4324 -0.6159
50 1 4.1836 5.0787 -1.2844
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074840674.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:34
Heat of formation + Delta-G solvation = -104.714153 kcal
Electronic energy + Delta-G solvation = -27947.589785 eV
Core-core repulsion = 24099.695078 eV
Total energy + Delta-G solvation = -3847.894707 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.87028 -40.57407 -38.55959 -36.33942 -35.39373 -34.57820 -34.01456 -32.74604
-31.15704 -30.19636 -28.39550 -27.64352 -26.04558 -25.20817 -23.17829 -22.54666
-21.85974 -21.11159 -19.86073 -19.64262 -17.91411 -17.72059 -17.44335 -17.04614
-16.87563 -16.74454 -16.44716 -15.98745 -15.62931 -15.17710 -15.09911 -14.80776
-14.79017 -14.53028 -14.44734 -14.39511 -13.78445 -13.57061 -13.42859 -13.33963
-13.15114 -13.10546 -12.92114 -12.86300 -12.63350 -12.57452 -12.22200 -12.11039
-12.05638 -11.89943 -11.83630 -11.74230 -11.66323 -11.43423 -11.15439 -10.90651
-10.25660 -10.14032 -10.05472 -9.55415 -8.64658 -8.34482 -6.11483 1.28180
1.41165 1.47830 1.58617 1.64534 1.66826 1.97055 2.25937 2.31571
2.99883 3.32712 3.47237 3.70436 3.71580 3.86274 3.96039 3.99945
4.03944 4.07494 4.19201 4.26788 4.31123 4.36254 4.42040 4.47147
4.52901 4.61009 4.64976 4.73377 4.75557 4.84537 4.89187 4.93581
4.95178 4.99820 5.02477 5.09812 5.12973 5.20791 5.28746 5.37505
5.40214 5.42899 5.51238 5.52508 5.67681 6.20508 6.43144 6.50645
7.07477 7.24179 7.26349 8.74764
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.016634 B = 0.002070 C = 0.001992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1682.890405 B =13525.230183 C =14050.655300
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.122 4.122
3 C -0.099 4.099
4 C -0.140 4.140
5 C 0.510 3.490
6 O -0.567 6.567
7 N -0.607 5.607
8 C 0.111 3.889
9 C -0.142 4.142
10 C 0.145 3.855
11 H 0.074 0.926
12 N -0.708 5.708
13 C 0.539 3.461
14 O -0.560 6.560
15 C -0.132 4.132
16 S -0.146 6.146
17 C -0.546 4.546
18 H 0.081 0.919
19 C 0.014 3.986
20 N -0.910 5.910
21 Si 0.996 3.004
22 H -0.258 1.258
23 H -0.274 1.274
24 H -0.275 1.275
25 C -0.125 4.125
26 C 0.139 3.861
27 H 0.077 0.923
28 C -0.126 4.126
29 H 0.050 0.950
30 H 0.051 0.949
31 H 0.061 0.939
32 H 0.070 0.930
33 H 0.069 0.931
34 H 0.053 0.947
35 H 0.054 0.946
36 H 0.111 0.889
37 H 0.108 0.892
38 H 0.069 0.931
39 H 0.111 0.889
40 H 0.067 0.933
41 H 0.091 0.909
42 H 0.410 0.590
43 H 0.106 0.894
44 H 0.108 0.892
45 H 0.271 0.729
46 H 0.091 0.909
47 H 0.090 0.910
48 H 0.060 0.940
49 H 0.057 0.943
50 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.476 -0.303 -6.039 28.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.160 4.160
3 C -0.137 4.137
4 C -0.179 4.179
5 C 0.300 3.700
6 O -0.447 6.447
7 N -0.341 5.341
8 C -0.012 4.012
9 C -0.181 4.181
10 C 0.041 3.959
11 H 0.092 0.908
12 N -0.363 5.363
13 C 0.325 3.675
14 O -0.438 6.438
15 C -0.283 4.283
16 S 0.081 5.919
17 C -0.694 4.694
18 H 0.100 0.900
19 C -0.191 4.191
20 N -0.547 5.547
21 Si 0.819 3.181
22 H -0.181 1.181
23 H -0.199 1.199
24 H -0.200 1.200
25 C -0.164 4.164
26 C 0.036 3.964
27 H 0.095 0.905
28 C -0.183 4.183
29 H 0.069 0.931
30 H 0.070 0.930
31 H 0.080 0.920
32 H 0.089 0.911
33 H 0.087 0.913
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.129 0.871
37 H 0.126 0.874
38 H 0.087 0.913
39 H 0.129 0.871
40 H 0.085 0.915
41 H 0.110 0.890
42 H 0.247 0.753
43 H 0.124 0.876
44 H 0.127 0.873
45 H 0.080 0.920
46 H 0.110 0.890
47 H 0.108 0.892
48 H 0.079 0.921
49 H 0.076 0.924
50 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -26.800 -0.884 -7.539 27.854
hybrid contribution 0.088 1.076 2.058 2.324
sum -26.712 0.192 -5.481 27.269
Atomic orbital electron populations
1.21779 0.95850 1.01957 1.01638 1.21533 0.96040 0.95606 1.02777
1.21304 0.93142 0.97243 1.02035 1.21830 0.97560 0.92684 1.05865
1.21215 0.81513 0.92501 0.74777 1.90741 1.56374 1.46524 1.51047
1.48274 1.05630 1.07784 1.72406 1.21808 0.90387 0.90516 0.98469
1.22245 0.98719 0.96957 1.00192 1.20957 0.93694 0.95260 0.86024
0.90778 1.45919 1.13132 1.58934 1.18328 1.19954 0.81829 0.77835
0.87879 1.90695 1.66356 1.41599 1.45166 1.23391 1.00436 1.05798
0.98716 1.85532 1.09048 1.74978 1.22373 1.23239 1.02890 1.42571
1.00671 0.90044 1.26089 0.95766 0.94372 1.02859 1.70180 1.08676
1.37922 1.37914 0.84936 0.78330 0.78205 0.76677 1.18127 1.19941
1.20021 1.22221 0.95096 0.99592 0.99475 1.21288 0.95125 0.81738
0.98237 0.90539 1.22017 0.96215 0.97318 1.02765 0.93115 0.93011
0.91984 0.91121 0.91256 0.92863 0.92702 0.87114 0.87350 0.91258
0.87094 0.91474 0.89049 0.75278 0.87579 0.87346 0.92017 0.89018
0.89195 0.92106 0.92400 0.93078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 9.91 71.98 0.71 -0.86 16
2 C -0.12 -1.18 5.93 30.59 0.18 -1.00 16
3 C -0.10 -1.30 4.50 30.60 0.14 -1.16 16
4 C -0.14 -1.57 4.06 29.85 0.12 -1.45 16
5 C 0.51 8.86 7.50 87.66 0.66 9.52 16
6 O -0.57 -13.54 11.55 -3.05 -0.04 -13.58 16
7 N -0.61 -9.22 2.97 -795.03 -2.36 -11.58 16
8 C 0.11 1.48 6.09 86.37 0.53 2.01 16
9 C -0.14 -2.35 5.77 30.67 0.18 -2.18 16
10 C 0.15 2.79 2.78 45.02 0.13 2.92 16
11 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16
12 N -0.71 -15.76 4.26 -442.40 -1.89 -17.65 16
13 C 0.54 18.22 7.81 87.66 0.68 18.90 16
14 O -0.56 -24.07 15.52 -3.03 -0.05 -24.11 16
15 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16
16 S -0.15 -7.89 20.57 -56.49 -1.16 -9.06 16
17 C -0.55 -30.61 9.50 67.95 0.65 -29.97 16
18 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16
19 C 0.01 0.78 5.49 84.86 0.47 1.25 16
20 N -0.91 -55.17 13.22 21.65 0.29 -54.88 16
21 Si 1.00 43.08 29.55 68.60 2.03 45.10 16
22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16
24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16
25 C -0.13 -1.80 5.07 30.68 0.16 -1.65 16
26 C 0.14 2.14 3.20 44.97 0.14 2.29 16
27 H 0.08 1.10 6.64 -2.39 -0.02 1.08 16
28 C -0.13 -2.25 7.61 71.98 0.55 -1.70 16
29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16
31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16
35 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16
36 H 0.11 0.87 7.93 -2.39 -0.02 0.85 16
37 H 0.11 0.89 7.70 -2.39 -0.02 0.87 16
38 H 0.07 1.04 7.74 -2.39 -0.02 1.02 16
39 H 0.11 0.98 5.92 -2.39 -0.01 0.97 16
40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16
42 H 0.41 7.03 6.87 -92.71 -0.64 6.39 16
43 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16
44 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16
45 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16
46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
47 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
48 H 0.06 1.34 6.54 -2.39 -0.02 1.32 16
49 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
50 H 0.05 1.05 6.95 -2.39 -0.02 1.04 16
Total: -1.00 -76.06 404.26 2.82 -73.24
By element:
Atomic # 1 Polarization: 19.85 SS G_CDS: 0.28 Total: 20.14 kcal
Atomic # 6 Polarization: -13.34 SS G_CDS: 5.72 Total: -7.62 kcal
Atomic # 7 Polarization: -80.14 SS G_CDS: -3.96 Total: -84.11 kcal
Atomic # 8 Polarization: -37.61 SS G_CDS: -0.08 Total: -37.69 kcal
Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal
Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.06 kcal
Total: -76.06 2.82 -73.24 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074840674.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.474 kcal
(2) G-P(sol) polarization free energy of solvation -76.064 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds