Wall clock time and date at job start Sat Apr 11 2020 06:39:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47023 * 2 1
4 4 C 1.50704 * 112.85055 * 297.22406 * 3 2 1
5 5 O 1.21284 * 119.99772 * 113.20296 * 4 3 2
6 6 N 1.34774 * 119.99884 * 293.20093 * 4 3 2
7 7 C 1.46498 * 119.99937 * 175.13860 * 6 4 3
8 8 H 1.08998 * 109.47383 * 325.00346 * 7 6 4
9 9 C 1.52997 * 109.47011 * 85.00283 * 7 6 4
10 10 C 1.53000 * 109.47106 * 204.99907 * 7 6 4
11 11 C 1.53000 * 109.46990 * 65.00463 * 10 7 6
12 12 N 1.46505 * 109.47174 * 180.02562 * 11 10 7
13 13 C 1.34779 * 119.99917 * 180.02562 * 12 11 10
14 14 O 1.21286 * 120.00105 * 359.97438 * 13 12 11
15 15 C 1.50696 * 119.99861 * 179.97438 * 13 12 11
16 16 S 1.80996 * 109.47041 * 180.02562 * 15 13 12
17 17 C 1.76202 * 100.00254 * 179.97438 * 16 15 13
18 18 H 1.08004 * 119.99327 * 0.02562 * 17 16 15
19 19 C 1.38792 * 120.00452 * 179.97438 * 17 16 15
20 20 N 1.31631 * 119.99832 * 359.97438 * 19 17 16
21 21 Si 1.86796 * 120.00327 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47195 * 59.99667 * 21 19 17
23 23 H 1.48496 * 109.47248 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46782 * 299.99950 * 21 19 17
25 25 C 1.53781 * 113.68651 * 68.48622 * 3 2 1
26 26 C 1.53779 * 87.07840 * 89.12694 * 25 3 2
27 27 C 1.53779 * 87.08347 * 25.43378 * 26 25 3
28 28 H 1.09007 * 109.46546 * 295.33672 * 1 2 3
29 29 H 1.08993 * 109.47682 * 55.34436 * 1 2 3
30 30 H 1.08998 * 109.46837 * 175.34745 * 1 2 3
31 31 H 1.09005 * 109.46622 * 240.00893 * 2 1 3
32 32 H 1.08997 * 109.47665 * 120.00837 * 2 1 3
33 33 H 0.97004 * 119.99869 * 355.14528 * 6 4 3
34 34 H 1.09000 * 109.47073 * 300.00077 * 9 7 6
35 35 H 1.09003 * 109.47429 * 60.00040 * 9 7 6
36 36 H 1.09001 * 109.47591 * 180.02562 * 9 7 6
37 37 H 1.09001 * 109.47024 * 185.00080 * 10 7 6
38 38 H 1.09006 * 109.47215 * 305.00290 * 10 7 6
39 39 H 1.09001 * 109.46925 * 299.99678 * 11 10 7
40 40 H 1.08996 * 109.47422 * 59.99746 * 11 10 7
41 41 H 0.96999 * 119.99655 * 359.97438 * 12 11 10
42 42 H 1.09001 * 109.47017 * 299.99750 * 15 13 12
43 43 H 1.08996 * 109.47124 * 59.99692 * 15 13 12
44 44 H 0.97000 * 120.00551 * 180.02562 * 20 19 17
45 45 H 1.09000 * 113.61586 * 203.67593 * 25 3 2
46 46 H 1.08999 * 113.61959 * 334.58096 * 25 3 2
47 47 H 1.09003 * 113.62002 * 270.88122 * 26 25 3
48 48 H 1.09007 * 113.61681 * 139.98163 * 26 25 3
49 49 H 1.09004 * 113.61419 * 220.02210 * 27 26 25
50 50 H 1.08996 * 113.69094 * 89.12252 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.6361 2.2061 -1.2349
5 8 0.8606 3.1345 -1.1473
6 7 2.1366 1.8572 -2.4367
7 6 1.6640 2.5286 -3.6499
8 1 0.6049 2.7644 -3.5456
9 6 2.4559 3.8209 -3.8591
10 6 1.8651 1.6067 -4.8543
11 6 0.9767 0.3701 -4.7038
12 7 1.1697 -0.5130 -5.8568
13 6 0.4849 -1.6708 -5.9408
14 8 -0.2908 -1.9818 -5.0618
15 6 0.6830 -2.5789 -7.1270
16 16 -0.3690 -4.0411 -6.9497
17 6 0.0511 -4.9015 -8.4289
18 1 0.7714 -4.4786 -9.1135
19 6 -0.5430 -6.1231 -8.7138
20 7 -1.4198 -6.6392 -7.8786
21 14 -0.0971 -7.0355 -10.2816
22 1 1.3574 -7.3347 -10.2836
23 1 -0.8643 -8.3051 -10.3507
24 1 -0.4305 -6.1917 -11.4572
25 6 1.7590 2.1971 1.3101
26 6 3.1099 1.6634 1.8153
27 6 3.5344 1.5676 0.3403
28 1 -0.3633 0.4398 0.9289
29 1 -0.3634 0.5843 -0.8453
30 1 -0.3633 -1.0243 -0.0834
31 1 1.8933 -0.5137 -0.8901
32 1 1.8934 -0.5139 0.8898
33 1 2.8098 1.1615 -2.4982
34 1 2.3127 4.4777 -3.0011
35 1 3.5150 3.5852 -3.9635
36 1 2.1040 4.3207 -4.7615
37 1 1.5966 2.1380 -5.7674
38 1 2.9096 1.2995 -4.9063
39 1 1.2452 -0.1612 -3.7907
40 1 -0.0678 0.6772 -4.6517
41 1 1.7898 -0.2641 -6.5599
42 1 0.4149 -2.0475 -8.0402
43 1 1.7274 -2.8863 -7.1788
44 1 -1.8347 -7.4932 -8.0774
45 1 1.7337 3.2806 1.1932
46 1 0.9026 1.8099 1.8621
47 1 3.0388 0.6963 2.3130
48 1 3.6816 2.3940 2.3876
49 1 4.1113 0.6720 0.1093
50 1 3.9948 2.4782 -0.0429
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001075679362.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:45
Heat of formation + Delta-G solvation = -81.008329 kcal
Electronic energy + Delta-G solvation = -27594.446102 eV
Core-core repulsion = 23747.579356 eV
Total energy + Delta-G solvation = -3846.866745 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.07796 -39.28195 -38.44965 -36.60691 -34.43366 -32.77149 -32.44115 -31.76668
-30.09445 -28.14275 -26.79585 -25.94501 -25.50330 -23.69290 -23.08314 -21.86062
-21.01375 -20.31867 -18.94002 -17.85827 -17.30242 -16.77012 -16.24349 -16.02931
-15.81792 -15.47642 -15.13531 -14.81778 -14.74549 -14.31755 -14.05850 -13.96707
-13.83295 -13.55494 -13.19239 -12.98355 -12.82232 -12.76417 -12.58228 -12.37014
-12.18883 -11.96422 -11.73706 -11.68181 -11.60365 -11.53566 -11.29599 -11.21654
-11.05893 -11.04939 -10.77902 -10.69700 -10.56003 -9.83981 -9.74209 -9.46352
-9.33607 -9.07652 -8.91033 -8.25450 -6.51506 -6.22665 -3.93554 2.42178
2.89857 3.00628 3.08028 3.22358 3.26439 3.29657 3.67262 4.01357
4.10505 4.19332 4.30886 4.41724 4.44014 4.54238 4.66826 4.74717
4.98217 5.03652 5.07702 5.08370 5.12317 5.15753 5.21741 5.29932
5.33126 5.38279 5.39293 5.45926 5.50836 5.57312 5.59558 5.61861
5.75171 5.76340 5.81260 5.85324 5.87643 5.92289 5.92403 6.02243
6.11631 6.12856 6.24293 6.57490 7.24756 7.57876 7.67515 8.00974
8.33716 8.59197 9.22386 10.84683
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017580 B = 0.001992 C = 0.001865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1592.344814 B =14050.828095 C =15011.072356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.095 4.095
3 C -0.106 4.106
4 C 0.534 3.466
5 O -0.538 6.538
6 N -0.725 5.725
7 C 0.146 3.854
8 H 0.091 0.909
9 C -0.161 4.161
10 C -0.140 4.140
11 C 0.122 3.878
12 N -0.740 5.740
13 C 0.531 3.469
14 O -0.516 6.516
15 C -0.153 4.153
16 S -0.060 6.060
17 C -0.536 4.536
18 H 0.072 0.928
19 C 0.073 3.927
20 N -0.868 5.868
21 Si 0.919 3.081
22 H -0.274 1.274
23 H -0.283 1.283
24 H -0.274 1.274
25 C -0.112 4.112
26 C -0.141 4.141
27 C -0.128 4.128
28 H 0.056 0.944
29 H 0.055 0.945
30 H 0.062 0.938
31 H 0.070 0.930
32 H 0.075 0.925
33 H 0.400 0.600
34 H 0.062 0.938
35 H 0.057 0.943
36 H 0.066 0.934
37 H 0.087 0.913
38 H 0.076 0.924
39 H 0.066 0.934
40 H 0.066 0.934
41 H 0.398 0.602
42 H 0.089 0.911
43 H 0.089 0.911
44 H 0.269 0.731
45 H 0.088 0.912
46 H 0.074 0.926
47 H 0.084 0.916
48 H 0.070 0.930
49 H 0.076 0.924
50 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.055 20.372 14.264 28.088
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.132 4.132
3 C -0.109 4.109
4 C 0.321 3.679
5 O -0.414 6.414
6 N -0.377 5.377
7 C 0.041 3.959
8 H 0.109 0.891
9 C -0.220 4.220
10 C -0.178 4.178
11 C -0.003 4.003
12 N -0.395 5.395
13 C 0.317 3.683
14 O -0.390 6.390
15 C -0.304 4.304
16 S 0.167 5.833
17 C -0.685 4.685
18 H 0.090 0.910
19 C -0.136 4.136
20 N -0.503 5.503
21 Si 0.745 3.255
22 H -0.199 1.199
23 H -0.208 1.208
24 H -0.199 1.199
25 C -0.150 4.150
26 C -0.178 4.178
27 C -0.165 4.165
28 H 0.075 0.925
29 H 0.074 0.926
30 H 0.081 0.919
31 H 0.089 0.911
32 H 0.094 0.906
33 H 0.234 0.766
34 H 0.081 0.919
35 H 0.076 0.924
36 H 0.085 0.915
37 H 0.105 0.895
38 H 0.094 0.906
39 H 0.084 0.916
40 H 0.084 0.916
41 H 0.231 0.769
42 H 0.108 0.892
43 H 0.107 0.893
44 H 0.079 0.921
45 H 0.107 0.893
46 H 0.093 0.907
47 H 0.103 0.897
48 H 0.089 0.911
49 H 0.095 0.905
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 11.031 20.364 15.835 28.056
hybrid contribution 1.823 -0.441 -2.540 3.158
sum 12.854 19.923 13.295 27.183
Atomic orbital electron populations
1.21763 0.94782 1.02374 1.02206 1.21295 0.96857 0.92037 1.03040
1.22243 0.98030 0.97121 0.93548 1.20386 0.79830 0.83500 0.84210
1.90688 1.35137 1.29385 1.86221 1.46121 1.44212 1.41188 1.06144
1.20874 1.00082 0.91781 0.83201 0.89133 1.22155 1.00172 0.97159
1.02495 1.22131 1.00912 0.96092 0.98651 1.21251 0.99812 0.89748
0.89458 1.46007 1.46846 1.21814 1.24856 1.20321 0.79618 0.80787
0.87622 1.90710 1.35092 1.72968 1.40254 1.23530 1.06227 1.02357
0.98301 1.85407 1.53279 1.13722 1.30942 1.22823 1.29945 1.08072
1.07611 0.90985 1.24994 0.94571 0.96391 0.97645 1.70006 1.26076
1.18557 1.35634 0.86222 0.78608 0.78692 0.81962 1.19941 1.20805
1.19940 1.22837 0.97790 1.00551 0.93832 1.22831 0.97282 1.01776
0.95931 1.22969 0.93833 1.02676 0.97054 0.92458 0.92602 0.91887
0.91110 0.90612 0.76555 0.91892 0.92435 0.91520 0.89476 0.90566
0.91618 0.91614 0.76868 0.89248 0.89264 0.92112 0.89311 0.90706
0.89746 0.91116 0.90519 0.89836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.50 9.63 37.16 0.36 -1.14 16
2 C -0.09 -0.75 5.30 -26.73 -0.14 -0.89 16
3 C -0.11 -0.84 0.79 -154.84 -0.12 -0.96 16
4 C 0.53 5.36 5.71 -10.98 -0.06 5.29 16
5 O -0.54 -7.37 15.86 5.55 0.09 -7.28 16
6 N -0.72 -5.71 4.53 -53.81 -0.24 -5.95 16
7 C 0.15 1.14 2.54 -67.93 -0.17 0.97 16
8 H 0.09 0.91 7.65 -51.93 -0.40 0.51 16
9 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16
10 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16
11 C 0.12 1.31 5.56 -4.04 -0.02 1.29 16
12 N -0.74 -9.23 5.56 -60.29 -0.33 -9.57 16
13 C 0.53 9.67 7.85 -10.99 -0.09 9.58 16
14 O -0.52 -11.62 15.86 5.55 0.09 -11.53 16
15 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16
16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
17 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16
18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16
19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
20 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16
21 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16
22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
25 C -0.11 -0.89 6.74 -25.92 -0.17 -1.06 16
26 C -0.14 -0.83 7.73 -25.92 -0.20 -1.03 16
27 C -0.13 -0.77 7.22 -25.92 -0.19 -0.95 16
28 H 0.06 0.52 7.08 -51.93 -0.37 0.15 16
29 H 0.05 0.65 7.34 -51.93 -0.38 0.26 16
30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.08 0.51 7.31 -51.93 -0.38 0.13 16
33 H 0.40 2.45 8.61 -40.82 -0.35 2.10 16
34 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16
40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
41 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16
42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16
43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16
44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
45 H 0.09 0.80 7.74 -51.93 -0.40 0.40 16
46 H 0.07 0.59 7.01 -51.93 -0.36 0.22 16
47 H 0.08 0.44 7.60 -51.93 -0.39 0.05 16
48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
49 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16
50 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16
LS Contribution 419.43 15.07 6.32 6.32
Total: -1.00 -35.93 419.43 -9.57 -45.50
By element:
Atomic # 1 Polarization: 10.72 SS G_CDS: -8.82 Total: 1.90 kcal
Atomic # 6 Polarization: -6.29 SS G_CDS: -0.17 Total: -6.45 kcal
Atomic # 7 Polarization: -41.02 SS G_CDS: 0.16 Total: -40.86 kcal
Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 6.32 Total: 6.32 kcal
Total: -35.93 -9.57 -45.50 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075679362.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.508 kcal
(2) G-P(sol) polarization free energy of solvation -35.928 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds