Wall clock time and date at job start Sat Apr 11 2020 06:39:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47023 * 2 1
4 4 C 1.50704 * 112.85055 * 297.22406 * 3 2 1
5 5 O 1.21284 * 119.99772 * 113.20296 * 4 3 2
6 6 N 1.34774 * 119.99884 * 293.20093 * 4 3 2
7 7 C 1.46498 * 119.99937 * 175.13860 * 6 4 3
8 8 H 1.08998 * 109.47383 * 325.00346 * 7 6 4
9 9 C 1.52997 * 109.47011 * 85.00283 * 7 6 4
10 10 C 1.53000 * 109.47106 * 204.99907 * 7 6 4
11 11 C 1.53000 * 109.46990 * 65.00463 * 10 7 6
12 12 N 1.46505 * 109.47174 * 180.02562 * 11 10 7
13 13 C 1.34779 * 119.99917 * 180.02562 * 12 11 10
14 14 O 1.21286 * 120.00105 * 359.97438 * 13 12 11
15 15 C 1.50696 * 119.99861 * 179.97438 * 13 12 11
16 16 S 1.80996 * 109.47041 * 180.02562 * 15 13 12
17 17 C 1.76202 * 100.00254 * 179.97438 * 16 15 13
18 18 H 1.08004 * 119.99327 * 0.02562 * 17 16 15
19 19 C 1.38792 * 120.00452 * 179.97438 * 17 16 15
20 20 N 1.31631 * 119.99832 * 359.97438 * 19 17 16
21 21 Si 1.86796 * 120.00327 * 180.02562 * 19 17 16
22 22 H 1.48500 * 109.47195 * 59.99667 * 21 19 17
23 23 H 1.48496 * 109.47248 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46782 * 299.99950 * 21 19 17
25 25 C 1.53781 * 113.68651 * 68.48622 * 3 2 1
26 26 C 1.53779 * 87.07840 * 89.12694 * 25 3 2
27 27 C 1.53779 * 87.08347 * 25.43378 * 26 25 3
28 28 H 1.09007 * 109.46546 * 295.33672 * 1 2 3
29 29 H 1.08993 * 109.47682 * 55.34436 * 1 2 3
30 30 H 1.08998 * 109.46837 * 175.34745 * 1 2 3
31 31 H 1.09005 * 109.46622 * 240.00893 * 2 1 3
32 32 H 1.08997 * 109.47665 * 120.00837 * 2 1 3
33 33 H 0.97004 * 119.99869 * 355.14528 * 6 4 3
34 34 H 1.09000 * 109.47073 * 300.00077 * 9 7 6
35 35 H 1.09003 * 109.47429 * 60.00040 * 9 7 6
36 36 H 1.09001 * 109.47591 * 180.02562 * 9 7 6
37 37 H 1.09001 * 109.47024 * 185.00080 * 10 7 6
38 38 H 1.09006 * 109.47215 * 305.00290 * 10 7 6
39 39 H 1.09001 * 109.46925 * 299.99678 * 11 10 7
40 40 H 1.08996 * 109.47422 * 59.99746 * 11 10 7
41 41 H 0.96999 * 119.99655 * 359.97438 * 12 11 10
42 42 H 1.09001 * 109.47017 * 299.99750 * 15 13 12
43 43 H 1.08996 * 109.47124 * 59.99692 * 15 13 12
44 44 H 0.97000 * 120.00551 * 180.02562 * 20 19 17
45 45 H 1.09000 * 113.61586 * 203.67593 * 25 3 2
46 46 H 1.08999 * 113.61959 * 334.58096 * 25 3 2
47 47 H 1.09003 * 113.62002 * 270.88122 * 26 25 3
48 48 H 1.09007 * 113.61681 * 139.98163 * 26 25 3
49 49 H 1.09004 * 113.61419 * 220.02210 * 27 26 25
50 50 H 1.08996 * 113.69094 * 89.12252 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.6361 2.2061 -1.2349
5 8 0.8606 3.1345 -1.1473
6 7 2.1366 1.8572 -2.4367
7 6 1.6640 2.5286 -3.6499
8 1 0.6049 2.7644 -3.5456
9 6 2.4559 3.8209 -3.8591
10 6 1.8651 1.6067 -4.8543
11 6 0.9767 0.3701 -4.7038
12 7 1.1697 -0.5130 -5.8568
13 6 0.4849 -1.6708 -5.9408
14 8 -0.2908 -1.9818 -5.0618
15 6 0.6830 -2.5789 -7.1270
16 16 -0.3690 -4.0411 -6.9497
17 6 0.0511 -4.9015 -8.4289
18 1 0.7714 -4.4786 -9.1135
19 6 -0.5430 -6.1231 -8.7138
20 7 -1.4198 -6.6392 -7.8786
21 14 -0.0971 -7.0355 -10.2816
22 1 1.3574 -7.3347 -10.2836
23 1 -0.8643 -8.3051 -10.3507
24 1 -0.4305 -6.1917 -11.4572
25 6 1.7590 2.1971 1.3101
26 6 3.1099 1.6634 1.8153
27 6 3.5344 1.5676 0.3403
28 1 -0.3633 0.4398 0.9289
29 1 -0.3634 0.5843 -0.8453
30 1 -0.3633 -1.0243 -0.0834
31 1 1.8933 -0.5137 -0.8901
32 1 1.8934 -0.5139 0.8898
33 1 2.8098 1.1615 -2.4982
34 1 2.3127 4.4777 -3.0011
35 1 3.5150 3.5852 -3.9635
36 1 2.1040 4.3207 -4.7615
37 1 1.5966 2.1380 -5.7674
38 1 2.9096 1.2995 -4.9063
39 1 1.2452 -0.1612 -3.7907
40 1 -0.0678 0.6772 -4.6517
41 1 1.7898 -0.2641 -6.5599
42 1 0.4149 -2.0475 -8.0402
43 1 1.7274 -2.8863 -7.1788
44 1 -1.8347 -7.4932 -8.0774
45 1 1.7337 3.2806 1.1932
46 1 0.9026 1.8099 1.8621
47 1 3.0388 0.6963 2.3130
48 1 3.6816 2.3940 2.3876
49 1 4.1113 0.6720 0.1093
50 1 3.9948 2.4782 -0.0429
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001075679362.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:44
Heat of formation + Delta-G solvation = -105.896938 kcal
Electronic energy + Delta-G solvation = -27595.525353 eV
Core-core repulsion = 23747.579356 eV
Total energy + Delta-G solvation = -3847.945996 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.77379 -40.61741 -39.18937 -37.49241 -35.57526 -34.57717 -33.47388 -32.64170
-31.30266 -29.21815 -27.64562 -27.43797 -26.51020 -24.54592 -23.82725 -22.52900
-21.89251 -21.49960 -19.87563 -19.54839 -18.03171 -17.73852 -17.47598 -17.20862
-16.87061 -16.66336 -16.49244 -15.94491 -15.83822 -15.44755 -15.14717 -14.88580
-14.82433 -14.47788 -14.43682 -14.30040 -13.65456 -13.56231 -13.51133 -13.33223
-13.16325 -12.99302 -12.86149 -12.71044 -12.66044 -12.47168 -12.41854 -12.34837
-12.24619 -11.98746 -11.88162 -11.73435 -11.28551 -11.13881 -11.12230 -10.96362
-10.49974 -10.26815 -10.18684 -10.03515 -8.66278 -8.33821 -6.12121 1.27645
1.44524 1.47752 1.57253 1.61958 1.64988 2.23496 2.26150 2.30124
3.00200 3.32631 3.39751 3.50930 3.72032 3.73780 3.81999 3.89086
4.01150 4.03405 4.09501 4.29580 4.31515 4.41057 4.43197 4.47583
4.50663 4.52363 4.61204 4.78431 4.79093 4.81358 4.82570 4.88193
4.97563 5.02404 5.03702 5.09563 5.11276 5.14959 5.28410 5.30438
5.32350 5.42102 5.43134 5.49498 5.57260 6.20277 6.52361 6.57490
7.07299 7.26419 7.28389 8.75081
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017580 B = 0.001992 C = 0.001865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1592.344814 B =14050.828095 C =15011.072356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.090 4.090
3 C -0.109 4.109
4 C 0.529 3.471
5 O -0.583 6.583
6 N -0.715 5.715
7 C 0.145 3.855
8 H 0.062 0.938
9 C -0.153 4.153
10 C -0.122 4.122
11 C 0.121 3.879
12 N -0.710 5.710
13 C 0.531 3.469
14 O -0.568 6.568
15 C -0.129 4.129
16 S -0.155 6.155
17 C -0.546 4.546
18 H 0.084 0.916
19 C 0.012 3.988
20 N -0.912 5.912
21 Si 0.999 3.001
22 H -0.261 1.261
23 H -0.280 1.280
24 H -0.262 1.262
25 C -0.121 4.121
26 C -0.131 4.131
27 C -0.117 4.117
28 H 0.060 0.940
29 H 0.029 0.971
30 H 0.058 0.942
31 H 0.072 0.928
32 H 0.095 0.905
33 H 0.412 0.588
34 H 0.039 0.961
35 H 0.075 0.925
36 H 0.079 0.921
37 H 0.106 0.894
38 H 0.104 0.896
39 H 0.058 0.942
40 H 0.043 0.957
41 H 0.419 0.581
42 H 0.110 0.890
43 H 0.113 0.887
44 H 0.271 0.729
45 H 0.071 0.929
46 H 0.069 0.931
47 H 0.096 0.904
48 H 0.079 0.921
49 H 0.094 0.906
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.400 20.835 12.792 29.440
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.128 4.128
3 C -0.112 4.112
4 C 0.317 3.683
5 O -0.463 6.463
6 N -0.367 5.367
7 C 0.040 3.960
8 H 0.080 0.920
9 C -0.212 4.212
10 C -0.160 4.160
11 C -0.003 4.003
12 N -0.365 5.365
13 C 0.317 3.683
14 O -0.446 6.446
15 C -0.280 4.280
16 S 0.072 5.928
17 C -0.693 4.693
18 H 0.102 0.898
19 C -0.193 4.193
20 N -0.548 5.548
21 Si 0.820 3.180
22 H -0.185 1.185
23 H -0.205 1.205
24 H -0.187 1.187
25 C -0.159 4.159
26 C -0.168 4.168
27 C -0.155 4.155
28 H 0.079 0.921
29 H 0.048 0.952
30 H 0.077 0.923
31 H 0.091 0.909
32 H 0.113 0.887
33 H 0.248 0.752
34 H 0.058 0.942
35 H 0.094 0.906
36 H 0.098 0.902
37 H 0.124 0.876
38 H 0.123 0.877
39 H 0.076 0.924
40 H 0.061 0.939
41 H 0.256 0.744
42 H 0.128 0.872
43 H 0.131 0.869
44 H 0.080 0.920
45 H 0.090 0.910
46 H 0.088 0.912
47 H 0.114 0.886
48 H 0.097 0.903
49 H 0.113 0.887
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 14.446 20.861 14.332 29.143
hybrid contribution 0.772 -0.451 -2.035 2.223
sum 15.219 20.411 12.296 28.274
Atomic orbital electron populations
1.21749 0.96588 1.01512 1.01249 1.21288 0.95172 0.92247 1.04069
1.22288 0.99838 0.96613 0.92423 1.20828 0.79140 0.83049 0.85328
1.90663 1.37190 1.31500 1.86920 1.46084 1.43887 1.41025 1.05703
1.20868 0.98858 0.92780 0.83542 0.91954 1.22075 1.01050 0.95939
1.02092 1.22040 1.01440 0.93780 0.98724 1.21346 0.99675 0.90831
0.88401 1.45697 1.45364 1.19762 1.25636 1.20112 0.79679 0.81981
0.86543 1.90704 1.37630 1.74428 1.41843 1.23368 1.05469 0.99226
0.99927 1.85620 1.56590 1.18511 1.32086 1.23172 1.30091 1.08468
1.07603 0.89781 1.26144 0.94234 0.97405 1.01504 1.70181 1.27519
1.19105 1.38027 0.85000 0.78814 0.77085 0.77082 1.18509 1.20543
1.18681 1.22851 0.99152 0.99607 0.94300 1.22823 0.95517 1.02393
0.96081 1.22953 0.92196 1.03537 0.96811 0.92078 0.95214 0.92331
0.90893 0.88659 0.75198 0.94153 0.90586 0.90226 0.87571 0.87712
0.92387 0.93860 0.74353 0.87215 0.86918 0.92030 0.91024 0.91186
0.88557 0.90273 0.88701 0.89780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.14 9.63 71.98 0.69 -2.44 16
2 C -0.09 -1.37 5.30 30.60 0.16 -1.21 16
3 C -0.11 -1.66 0.79 -52.40 -0.04 -1.70 16
4 C 0.53 10.80 5.71 87.66 0.50 11.30 16
5 O -0.58 -16.95 15.86 -3.04 -0.05 -17.00 16
6 N -0.72 -10.66 4.53 -442.54 -2.00 -12.67 16
7 C 0.14 2.12 2.54 44.99 0.11 2.23 16
8 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16
9 C -0.15 -1.85 9.48 71.98 0.68 -1.17 16
10 C -0.12 -1.31 4.87 30.59 0.15 -1.16 16
11 C 0.12 2.46 5.56 86.38 0.48 2.94 16
12 N -0.71 -16.00 5.56 -463.05 -2.57 -18.57 16
13 C 0.53 18.88 7.85 87.66 0.69 19.57 16
14 O -0.57 -26.12 15.86 -3.05 -0.05 -26.17 16
15 C -0.13 -4.91 6.16 71.23 0.44 -4.47 16
16 S -0.16 -8.54 20.57 -56.49 -1.16 -9.70 16
17 C -0.55 -30.77 9.50 67.95 0.65 -30.13 16
18 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16
19 C 0.01 0.67 5.49 84.86 0.47 1.13 16
20 N -0.91 -55.89 13.22 21.65 0.29 -55.60 16
21 Si 1.00 43.09 29.55 68.60 2.03 45.11 16
22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16
23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16
24 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16
25 C -0.12 -1.91 6.74 31.12 0.21 -1.70 16
26 C -0.13 -1.30 7.73 31.12 0.24 -1.06 16
27 C -0.12 -1.17 7.22 31.12 0.22 -0.94 16
28 H 0.06 1.16 7.08 -2.38 -0.02 1.14 16
29 H 0.03 0.74 7.34 -2.39 -0.02 0.72 16
30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16
32 H 0.09 1.10 7.31 -2.39 -0.02 1.08 16
33 H 0.41 4.19 8.61 -92.70 -0.80 3.39 16
34 H 0.04 0.69 8.10 -2.39 -0.02 0.67 16
35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16
37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
38 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16
39 H 0.06 1.31 7.75 -2.39 -0.02 1.29 16
40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
41 H 0.42 6.06 8.47 -92.71 -0.79 5.27 16
42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16
43 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16
44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16
45 H 0.07 1.37 7.74 -2.39 -0.02 1.36 16
46 H 0.07 1.13 7.01 -2.39 -0.02 1.12 16
47 H 0.10 0.76 7.60 -2.39 -0.02 0.74 16
48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16
49 H 0.09 0.63 8.10 -2.38 -0.02 0.62 16
50 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16
Total: -1.00 -83.12 419.43 1.48 -81.63
By element:
Atomic # 1 Polarization: 22.43 SS G_CDS: -0.65 Total: 21.78 kcal
Atomic # 6 Polarization: -14.47 SS G_CDS: 5.65 Total: -8.82 kcal
Atomic # 7 Polarization: -82.55 SS G_CDS: -4.29 Total: -86.84 kcal
Atomic # 8 Polarization: -43.07 SS G_CDS: -0.10 Total: -43.17 kcal
Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal
Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal
Total: -83.12 1.48 -81.63 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075679362.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.262 kcal
(2) G-P(sol) polarization free energy of solvation -83.117 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds