Wall clock time and date at job start Sat Apr 11 2020 06:39:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47230 * 2 1
4 4 C 1.53005 * 109.46794 * 175.90231 * 3 2 1
5 5 C 1.50696 * 115.55285 * 294.75193 * 4 3 2
6 6 O 1.21278 * 120.00238 * 123.26405 * 5 4 3
7 7 N 1.34781 * 119.99642 * 303.26648 * 5 4 3
8 8 C 1.46498 * 119.99763 * 175.04261 * 7 5 4
9 9 H 1.09005 * 109.47157 * 325.00022 * 8 7 5
10 10 C 1.52998 * 109.47300 * 84.99575 * 8 7 5
11 11 C 1.52999 * 109.47392 * 204.99861 * 8 7 5
12 12 H 1.09004 * 109.46901 * 64.99749 * 11 8 7
13 13 C 1.52995 * 109.46820 * 305.00262 * 11 8 7
14 14 N 1.46492 * 109.47482 * 184.99946 * 11 8 7
15 15 C 1.34777 * 120.00204 * 205.00281 * 14 11 8
16 16 O 1.21290 * 119.99884 * 359.97438 * 15 14 11
17 17 C 1.50699 * 120.00265 * 180.02562 * 15 14 11
18 18 S 1.81003 * 109.47322 * 179.97438 * 17 15 14
19 19 C 1.76201 * 99.99871 * 180.02562 * 18 17 15
20 20 H 1.08000 * 120.00232 * 359.97438 * 19 18 17
21 21 C 1.38796 * 119.99670 * 180.02562 * 19 18 17
22 22 N 1.31634 * 120.00319 * 359.97438 * 21 19 18
23 23 Si 1.86801 * 119.99908 * 179.97438 * 21 19 18
24 24 H 1.48499 * 109.46975 * 60.00035 * 23 21 19
25 25 H 1.48507 * 109.47119 * 179.97438 * 23 21 19
26 26 H 1.48497 * 109.47047 * 299.99729 * 23 21 19
27 27 C 1.53008 * 117.49792 * 80.42269 * 4 3 2
28 28 C 1.53004 * 117.49386 * 149.08226 * 4 3 2
29 29 H 1.09000 * 109.47448 * 59.99339 * 1 2 3
30 30 H 1.08999 * 109.47203 * 180.02562 * 1 2 3
31 31 H 1.09010 * 109.46776 * 299.99968 * 1 2 3
32 32 H 1.09000 * 109.46963 * 240.00079 * 2 1 3
33 33 H 1.09004 * 109.46864 * 120.00230 * 2 1 3
34 34 H 1.08991 * 109.47323 * 55.90471 * 3 2 1
35 35 H 1.09001 * 109.46890 * 295.89721 * 3 2 1
36 36 H 0.96999 * 119.99849 * 355.04307 * 7 5 4
37 37 H 1.08995 * 109.47235 * 300.00251 * 10 8 7
38 38 H 1.09005 * 109.46650 * 60.00137 * 10 8 7
39 39 H 1.08999 * 109.47166 * 179.97438 * 10 8 7
40 40 H 1.08994 * 109.47494 * 299.99505 * 13 11 8
41 41 H 1.09000 * 109.47425 * 60.00046 * 13 11 8
42 42 H 1.09010 * 109.47354 * 179.97438 * 13 11 8
43 43 H 0.97000 * 120.00215 * 25.00174 * 14 11 8
44 44 H 1.08995 * 109.47058 * 300.00030 * 17 15 14
45 45 H 1.09001 * 109.46713 * 59.99688 * 17 15 14
46 46 H 0.97004 * 120.00148 * 180.02562 * 22 21 19
47 47 H 1.08988 * 117.49675 * 215.00029 * 27 4 3
48 48 H 1.08999 * 117.49423 * 0.02562 * 27 4 3
49 49 H 1.08999 * 117.50381 * 359.97209 * 28 4 3
50 50 H 1.09002 * 117.49606 * 144.97652 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5666 1.4436 0.1031
5 6 4.1315 0.9044 1.3919
6 8 4.9167 -0.0196 1.3703
7 7 3.7639 1.4491 2.5687
8 6 4.2270 0.8570 3.8262
9 1 4.2842 -0.2262 3.7185
10 6 5.6117 1.4091 4.1705
11 6 3.2455 1.2070 4.9466
12 1 2.2820 0.7388 4.7449
13 6 3.0702 2.7253 5.0152
14 7 3.7683 0.7175 6.2245
15 6 2.9232 0.4443 7.2382
16 8 1.7297 0.6042 7.0925
17 6 3.4611 -0.0587 8.5530
18 16 2.0892 -0.3299 9.7021
19 6 2.9794 -0.8974 11.1128
20 1 4.0553 -0.9825 11.0741
21 6 2.2977 -1.2360 12.2735
22 7 0.9863 -1.1327 12.3205
23 14 3.2413 -1.8383 13.7689
24 1 4.1966 -0.7891 14.2070
25 1 2.2891 -2.1311 14.8702
26 1 3.9884 -3.0729 13.4185
27 6 4.3614 1.1865 -1.1788
28 6 4.3194 2.5916 -0.5726
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8901
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6181 1.9771 0.8509
35 1 1.7380 1.9346 -0.9245
36 1 3.1929 2.2330 2.5830
37 1 6.3109 1.1598 3.3724
38 1 5.5545 2.4923 4.2782
39 1 5.9560 0.9689 5.1063
40 1 4.0336 3.1935 5.2168
41 1 2.6811 3.0895 4.0644
42 1 2.3706 2.9747 5.8131
43 1 4.7228 0.5899 6.3411
44 1 3.9925 -0.9968 8.3931
45 1 4.1451 0.6794 8.9719
46 1 0.5099 -1.3690 13.1318
47 1 5.2928 0.6274 -1.0899
48 1 3.7967 1.0170 -2.0956
49 1 3.7272 3.3457 -1.0910
50 1 5.2230 2.9570 -0.0847
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001285297585.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:46
Heat of formation + Delta-G solvation = -69.553912 kcal
Electronic energy + Delta-G solvation = -27624.817848 eV
Core-core repulsion = 23778.447803 eV
Total energy + Delta-G solvation = -3846.370045 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.78105 -39.53875 -37.80984 -36.65369 -34.25310 -33.95434 -32.43487 -31.35383
-29.82008 -28.51014 -27.84704 -25.51565 -25.25360 -23.69187 -23.02056 -21.86243
-20.81687 -19.99779 -19.89730 -17.97468 -17.37399 -16.62606 -16.31042 -16.05234
-15.56078 -15.29893 -15.05604 -14.81923 -14.80634 -14.58666 -14.30927 -13.97042
-13.76147 -13.32772 -13.27951 -13.16960 -12.84130 -12.61181 -12.55462 -12.45493
-12.11298 -12.06444 -11.95481 -11.91374 -11.66383 -11.23755 -11.11936 -11.08022
-11.04859 -11.04051 -10.79142 -10.77292 -10.40484 -10.02642 -9.83427 -9.47325
-9.38946 -9.07594 -8.98951 -8.25624 -6.51076 -6.22268 -3.93036 2.24083
2.62695 3.04087 3.08832 3.23279 3.26376 3.28135 3.33191 3.71200
4.10038 4.19849 4.25172 4.33692 4.40921 4.49435 4.64851 4.76185
4.85536 4.89227 5.00068 5.08240 5.12805 5.15993 5.16667 5.19983
5.28030 5.37942 5.39629 5.45333 5.46594 5.48259 5.51134 5.61529
5.67480 5.70005 5.78763 5.78889 5.86502 5.86976 5.92185 5.98841
6.12238 6.15233 6.16851 6.57551 7.17159 7.58601 7.64127 7.92487
8.34349 8.56185 9.22985 10.85036
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.020882 B = 0.001958 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.518746 B =14296.847332 C =14939.810640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.124 4.124
3 C -0.076 4.076
4 C -0.162 4.162
5 C 0.554 3.446
6 O -0.534 6.534
7 N -0.717 5.717
8 C 0.137 3.863
9 H 0.094 0.906
10 C -0.167 4.167
11 C 0.138 3.862
12 H 0.094 0.906
13 C -0.168 4.168
14 N -0.732 5.732
15 C 0.535 3.465
16 O -0.515 6.515
17 C -0.154 4.154
18 S -0.059 6.059
19 C -0.536 4.536
20 H 0.072 0.928
21 C 0.073 3.927
22 N -0.868 5.868
23 Si 0.919 3.081
24 H -0.274 1.274
25 H -0.283 1.283
26 H -0.274 1.274
27 C -0.143 4.143
28 C -0.157 4.157
29 H 0.053 0.947
30 H 0.056 0.944
31 H 0.056 0.944
32 H 0.064 0.936
33 H 0.062 0.938
34 H 0.070 0.930
35 H 0.073 0.927
36 H 0.402 0.598
37 H 0.065 0.935
38 H 0.064 0.936
39 H 0.067 0.933
40 H 0.063 0.937
41 H 0.059 0.941
42 H 0.071 0.929
43 H 0.398 0.602
44 H 0.090 0.910
45 H 0.090 0.910
46 H 0.269 0.731
47 H 0.105 0.895
48 H 0.103 0.897
49 H 0.104 0.896
50 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.591 9.178 -27.530 29.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.161 4.161
3 C -0.114 4.114
4 C -0.165 4.165
5 C 0.340 3.660
6 O -0.410 6.410
7 N -0.371 5.371
8 C 0.031 3.969
9 H 0.112 0.888
10 C -0.225 4.225
11 C 0.032 3.968
12 H 0.112 0.888
13 C -0.226 4.226
14 N -0.388 5.388
15 C 0.321 3.679
16 O -0.389 6.389
17 C -0.305 4.305
18 S 0.168 5.832
19 C -0.684 4.684
20 H 0.090 0.910
21 C -0.136 4.136
22 N -0.503 5.503
23 Si 0.745 3.255
24 H -0.199 1.199
25 H -0.208 1.208
26 H -0.199 1.199
27 C -0.180 4.180
28 C -0.195 4.195
29 H 0.072 0.928
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.089 0.911
35 H 0.092 0.908
36 H 0.238 0.762
37 H 0.084 0.916
38 H 0.083 0.917
39 H 0.086 0.914
40 H 0.082 0.918
41 H 0.077 0.923
42 H 0.090 0.910
43 H 0.234 0.766
44 H 0.108 0.892
45 H 0.108 0.892
46 H 0.079 0.921
47 H 0.123 0.877
48 H 0.121 0.879
49 H 0.123 0.877
50 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.968 8.729 -27.655 29.422
hybrid contribution 2.177 -0.242 1.277 2.535
sum 7.145 8.487 -26.378 28.616
Atomic orbital electron populations
1.21774 0.95406 1.02015 1.01829 1.21493 0.95962 0.96098 1.02574
1.21147 0.89559 0.97879 1.02798 1.21546 0.95793 1.06299 0.92858
1.19484 0.80360 0.82149 0.83988 1.90710 1.34206 1.28920 1.87199
1.46004 1.53183 1.32882 1.04997 1.21116 0.93596 0.99434 0.82717
0.88816 1.22241 0.96423 1.01747 1.02126 1.20958 0.97763 0.95070
0.82988 0.88815 1.22263 1.02820 0.95240 1.02272 1.46082 1.10598
1.69719 1.12443 1.20331 0.86505 0.76297 0.84784 1.90703 1.15396
1.50809 1.81994 1.23537 1.06561 1.03717 0.96645 1.85383 1.05687
1.85970 1.06203 1.22826 0.95330 1.51421 0.98861 0.90962 1.24993
0.95060 0.95089 0.98443 1.70008 1.06504 1.45298 1.28483 0.86223
0.79276 0.79220 0.80778 1.19943 1.20814 1.19925 1.23000 1.01984
0.98299 0.94716 1.23106 1.01873 0.91776 1.02722 0.92786 0.92524
0.92480 0.91733 0.91960 0.91089 0.90790 0.76174 0.91640 0.91714
0.91432 0.91841 0.92263 0.91006 0.76568 0.89156 0.89166 0.92124
0.87703 0.87906 0.87735 0.88395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16
2 C -0.12 -0.92 5.85 -26.73 -0.16 -1.07 16
3 C -0.08 -0.46 5.07 -26.73 -0.14 -0.60 16
4 C -0.16 -1.17 1.91 -155.65 -0.30 -1.47 16
5 C 0.55 5.51 6.42 -10.99 -0.07 5.43 16
6 O -0.53 -7.35 16.17 5.56 0.09 -7.26 16
7 N -0.72 -5.94 4.97 -53.81 -0.27 -6.21 16
8 C 0.14 1.30 2.58 -67.93 -0.18 1.12 16
9 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16
10 C -0.17 -1.40 9.00 37.16 0.33 -1.06 16
11 C 0.14 1.51 2.62 -67.94 -0.18 1.33 16
12 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16
13 C -0.17 -1.59 9.00 37.15 0.33 -1.25 16
14 N -0.73 -9.28 4.99 -53.81 -0.27 -9.55 16
15 C 0.53 9.60 7.81 -10.99 -0.09 9.51 16
16 O -0.52 -11.22 15.53 5.55 0.09 -11.14 16
17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16
18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16
19 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16
20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16
22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16
23 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16
24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
27 C -0.14 -0.96 9.77 -26.68 -0.26 -1.22 16
28 C -0.16 -0.87 9.93 -26.69 -0.26 -1.14 16
29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16
32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16
34 H 0.07 0.39 7.97 -51.93 -0.41 -0.02 16
35 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16
36 H 0.40 2.55 6.41 -40.82 -0.26 2.29 16
37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16
38 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16
39 H 0.07 0.51 6.29 -51.93 -0.33 0.18 16
40 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16
41 H 0.06 0.41 6.29 -51.93 -0.33 0.09 16
42 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16
43 H 0.40 4.05 6.58 -40.82 -0.27 3.78 16
44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16
45 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16
46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
47 H 0.10 0.86 7.85 -51.94 -0.41 0.45 16
48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16
49 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 418.41 15.07 6.31 6.31
Total: -1.00 -35.26 418.41 -9.21 -44.47
By element:
Atomic # 1 Polarization: 11.47 SS G_CDS: -8.48 Total: 2.99 kcal
Atomic # 6 Polarization: -6.63 SS G_CDS: -0.17 Total: -6.80 kcal
Atomic # 7 Polarization: -41.30 SS G_CDS: 0.20 Total: -41.10 kcal
Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.40 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal
Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal
Total LS contribution 6.31 Total: 6.31 kcal
Total: -35.26 -9.21 -44.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001285297585.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.085 kcal
(2) G-P(sol) polarization free energy of solvation -35.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.346 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.554 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds