Wall clock time and date at job start Sat Apr 11 2020 06:39:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47230 * 2 1
4 4 C 1.53005 * 109.46794 * 175.90231 * 3 2 1
5 5 C 1.50696 * 115.55285 * 294.75193 * 4 3 2
6 6 O 1.21278 * 120.00238 * 123.26405 * 5 4 3
7 7 N 1.34781 * 119.99642 * 303.26648 * 5 4 3
8 8 C 1.46498 * 119.99763 * 175.04261 * 7 5 4
9 9 H 1.09005 * 109.47157 * 325.00022 * 8 7 5
10 10 C 1.52998 * 109.47300 * 84.99575 * 8 7 5
11 11 C 1.52999 * 109.47392 * 204.99861 * 8 7 5
12 12 H 1.09004 * 109.46901 * 64.99749 * 11 8 7
13 13 C 1.52995 * 109.46820 * 305.00262 * 11 8 7
14 14 N 1.46492 * 109.47482 * 184.99946 * 11 8 7
15 15 C 1.34777 * 120.00204 * 205.00281 * 14 11 8
16 16 O 1.21290 * 119.99884 * 359.97438 * 15 14 11
17 17 C 1.50699 * 120.00265 * 180.02562 * 15 14 11
18 18 S 1.81003 * 109.47322 * 179.97438 * 17 15 14
19 19 C 1.76201 * 99.99871 * 180.02562 * 18 17 15
20 20 H 1.08000 * 120.00232 * 359.97438 * 19 18 17
21 21 C 1.38796 * 119.99670 * 180.02562 * 19 18 17
22 22 N 1.31634 * 120.00319 * 359.97438 * 21 19 18
23 23 Si 1.86801 * 119.99908 * 179.97438 * 21 19 18
24 24 H 1.48499 * 109.46975 * 60.00035 * 23 21 19
25 25 H 1.48507 * 109.47119 * 179.97438 * 23 21 19
26 26 H 1.48497 * 109.47047 * 299.99729 * 23 21 19
27 27 C 1.53008 * 117.49792 * 80.42269 * 4 3 2
28 28 C 1.53004 * 117.49386 * 149.08226 * 4 3 2
29 29 H 1.09000 * 109.47448 * 59.99339 * 1 2 3
30 30 H 1.08999 * 109.47203 * 180.02562 * 1 2 3
31 31 H 1.09010 * 109.46776 * 299.99968 * 1 2 3
32 32 H 1.09000 * 109.46963 * 240.00079 * 2 1 3
33 33 H 1.09004 * 109.46864 * 120.00230 * 2 1 3
34 34 H 1.08991 * 109.47323 * 55.90471 * 3 2 1
35 35 H 1.09001 * 109.46890 * 295.89721 * 3 2 1
36 36 H 0.96999 * 119.99849 * 355.04307 * 7 5 4
37 37 H 1.08995 * 109.47235 * 300.00251 * 10 8 7
38 38 H 1.09005 * 109.46650 * 60.00137 * 10 8 7
39 39 H 1.08999 * 109.47166 * 179.97438 * 10 8 7
40 40 H 1.08994 * 109.47494 * 299.99505 * 13 11 8
41 41 H 1.09000 * 109.47425 * 60.00046 * 13 11 8
42 42 H 1.09010 * 109.47354 * 179.97438 * 13 11 8
43 43 H 0.97000 * 120.00215 * 25.00174 * 14 11 8
44 44 H 1.08995 * 109.47058 * 300.00030 * 17 15 14
45 45 H 1.09001 * 109.46713 * 59.99688 * 17 15 14
46 46 H 0.97004 * 120.00148 * 180.02562 * 22 21 19
47 47 H 1.08988 * 117.49675 * 215.00029 * 27 4 3
48 48 H 1.08999 * 117.49423 * 0.02562 * 27 4 3
49 49 H 1.08999 * 117.50381 * 359.97209 * 28 4 3
50 50 H 1.09002 * 117.49606 * 144.97652 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5666 1.4436 0.1031
5 6 4.1315 0.9044 1.3919
6 8 4.9167 -0.0196 1.3703
7 7 3.7639 1.4491 2.5687
8 6 4.2270 0.8570 3.8262
9 1 4.2842 -0.2262 3.7185
10 6 5.6117 1.4091 4.1705
11 6 3.2455 1.2070 4.9466
12 1 2.2820 0.7388 4.7449
13 6 3.0702 2.7253 5.0152
14 7 3.7683 0.7175 6.2245
15 6 2.9232 0.4443 7.2382
16 8 1.7297 0.6042 7.0925
17 6 3.4611 -0.0587 8.5530
18 16 2.0892 -0.3299 9.7021
19 6 2.9794 -0.8974 11.1128
20 1 4.0553 -0.9825 11.0741
21 6 2.2977 -1.2360 12.2735
22 7 0.9863 -1.1327 12.3205
23 14 3.2413 -1.8383 13.7689
24 1 4.1966 -0.7891 14.2070
25 1 2.2891 -2.1311 14.8702
26 1 3.9884 -3.0729 13.4185
27 6 4.3614 1.1865 -1.1788
28 6 4.3194 2.5916 -0.5726
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3633 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8901
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6181 1.9771 0.8509
35 1 1.7380 1.9346 -0.9245
36 1 3.1929 2.2330 2.5830
37 1 6.3109 1.1598 3.3724
38 1 5.5545 2.4923 4.2782
39 1 5.9560 0.9689 5.1063
40 1 4.0336 3.1935 5.2168
41 1 2.6811 3.0895 4.0644
42 1 2.3706 2.9747 5.8131
43 1 4.7228 0.5899 6.3411
44 1 3.9925 -0.9968 8.3931
45 1 4.1451 0.6794 8.9719
46 1 0.5099 -1.3690 13.1318
47 1 5.2928 0.6274 -1.0899
48 1 3.7967 1.0170 -2.0956
49 1 3.7272 3.3457 -1.0910
50 1 5.2230 2.9570 -0.0847
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001285297585.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:45
Heat of formation + Delta-G solvation = -93.223119 kcal
Electronic energy + Delta-G solvation = -27625.844221 eV
Core-core repulsion = 23778.447803 eV
Total energy + Delta-G solvation = -3847.396418 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.58680 -40.75004 -38.64655 -37.57123 -35.15840 -34.67778 -34.58117 -32.49674
-30.75118 -29.78860 -28.36938 -27.65855 -26.05340 -24.50283 -23.49897 -22.45802
-22.00744 -20.96654 -20.68816 -19.86831 -18.22061 -17.90105 -17.24872 -17.04478
-16.87598 -16.45767 -16.33331 -15.98184 -15.88013 -15.58865 -15.32869 -15.07483
-14.73098 -14.48620 -14.31291 -14.14648 -13.88971 -13.63355 -13.42068 -13.23793
-13.16995 -13.09247 -12.87002 -12.84377 -12.66702 -12.61550 -12.43315 -12.22063
-12.10872 -11.98881 -11.74462 -11.67261 -11.31156 -11.12971 -11.01114 -10.92485
-10.75958 -10.28408 -10.23195 -10.18110 -8.66340 -8.34593 -6.12442 1.24654
1.43708 1.43785 1.50058 1.55963 1.59202 1.92141 2.27220 2.41948
2.75416 2.99399 3.31271 3.43923 3.58170 3.72907 3.78531 3.84846
3.94524 3.98399 4.06877 4.19090 4.29004 4.32276 4.34232 4.43607
4.49114 4.51009 4.66783 4.67820 4.74364 4.81658 4.85561 4.89226
4.92292 4.95901 4.99198 5.01011 5.12648 5.22669 5.25887 5.30719
5.35351 5.37850 5.41755 5.42687 5.46900 6.19618 6.42288 6.49073
7.06688 7.17914 7.21353 8.74207
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.020882 B = 0.001958 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.518746 B =14296.847332 C =14939.810640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.124 4.124
3 C -0.071 4.071
4 C -0.171 4.171
5 C 0.551 3.449
6 O -0.580 6.580
7 N -0.706 5.706
8 C 0.146 3.854
9 H 0.071 0.929
10 C -0.162 4.162
11 C 0.141 3.859
12 H 0.071 0.929
13 C -0.162 4.162
14 N -0.708 5.708
15 C 0.538 3.462
16 O -0.559 6.559
17 C -0.131 4.131
18 S -0.148 6.148
19 C -0.547 4.547
20 H 0.083 0.917
21 C 0.013 3.987
22 N -0.911 5.911
23 Si 0.998 3.002
24 H -0.261 1.261
25 H -0.279 1.279
26 H -0.263 1.263
27 C -0.152 4.152
28 C -0.135 4.135
29 H 0.069 0.931
30 H 0.048 0.952
31 H 0.053 0.947
32 H 0.063 0.937
33 H 0.033 0.967
34 H 0.078 0.922
35 H 0.097 0.903
36 H 0.414 0.586
37 H 0.054 0.946
38 H 0.081 0.919
39 H 0.077 0.923
40 H 0.081 0.919
41 H 0.088 0.912
42 H 0.044 0.956
43 H 0.414 0.586
44 H 0.108 0.892
45 H 0.112 0.888
46 H 0.271 0.729
47 H 0.083 0.917
48 H 0.120 0.880
49 H 0.131 0.869
50 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.323 10.790 -28.593 31.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.161 4.161
3 C -0.108 4.108
4 C -0.174 4.174
5 C 0.338 3.662
6 O -0.459 6.459
7 N -0.360 5.360
8 C 0.040 3.960
9 H 0.089 0.911
10 C -0.221 4.221
11 C 0.036 3.964
12 H 0.089 0.911
13 C -0.220 4.220
14 N -0.364 5.364
15 C 0.324 3.676
16 O -0.437 6.437
17 C -0.283 4.283
18 S 0.079 5.921
19 C -0.695 4.695
20 H 0.101 0.899
21 C -0.192 4.192
22 N -0.547 5.547
23 Si 0.819 3.181
24 H -0.186 1.186
25 H -0.204 1.204
26 H -0.188 1.188
27 C -0.189 4.189
28 C -0.172 4.172
29 H 0.088 0.912
30 H 0.067 0.933
31 H 0.072 0.928
32 H 0.081 0.919
33 H 0.052 0.948
34 H 0.097 0.903
35 H 0.115 0.885
36 H 0.252 0.748
37 H 0.073 0.927
38 H 0.100 0.900
39 H 0.095 0.905
40 H 0.100 0.900
41 H 0.106 0.894
42 H 0.063 0.937
43 H 0.253 0.747
44 H 0.126 0.874
45 H 0.130 0.870
46 H 0.080 0.920
47 H 0.102 0.898
48 H 0.138 0.862
49 H 0.149 0.851
50 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 6.734 10.375 -28.750 31.298
hybrid contribution 1.681 -0.740 1.468 2.351
sum 8.415 9.635 -27.282 30.133
Atomic orbital electron populations
1.21761 0.94849 1.01787 1.02445 1.21477 0.96428 0.97114 1.01119
1.21155 0.88476 0.96850 1.04322 1.21535 0.96513 1.07927 0.91474
1.20020 0.79621 0.81431 0.85087 1.90687 1.36387 1.30941 1.87869
1.45905 1.52905 1.32911 1.04281 1.20904 0.94034 0.98374 0.82682
0.91120 1.22213 0.94912 1.02783 1.02152 1.21016 0.97033 0.96163
0.82202 0.91072 1.22223 1.03259 0.93619 1.02942 1.45825 1.10850
1.67892 1.11842 1.20025 0.86195 0.76249 0.85149 1.90695 1.17284
1.53042 1.82685 1.23384 1.03690 1.05386 0.95798 1.85545 1.11159
1.86433 1.08957 1.23175 0.95794 1.51319 0.99213 0.89925 1.26123
0.96034 0.95025 1.02003 1.70175 1.08498 1.46528 1.29499 0.85016
0.77829 0.79048 0.76185 1.18597 1.20417 1.18775 1.23044 1.01303
0.99389 0.95158 1.23215 1.01472 0.91387 1.01173 0.91154 0.93266
0.92792 0.91871 0.94792 0.90349 0.88474 0.74762 0.92710 0.90016
0.90468 0.90044 0.89389 0.93697 0.74692 0.87401 0.86997 0.92001
0.89829 0.86216 0.85105 0.88594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16
2 C -0.12 -1.77 5.85 30.59 0.18 -1.59 16
3 C -0.07 -0.70 5.07 30.60 0.16 -0.55 16
4 C -0.17 -2.21 1.91 -52.92 -0.10 -2.31 16
5 C 0.55 10.69 6.42 87.66 0.56 11.26 16
6 O -0.58 -16.37 16.17 -3.02 -0.05 -16.41 16
7 N -0.71 -10.90 4.97 -442.54 -2.20 -13.10 16
8 C 0.15 2.64 2.58 44.99 0.12 2.76 16
9 H 0.07 1.65 7.65 -2.38 -0.02 1.64 16
10 C -0.16 -2.40 9.00 71.98 0.65 -1.75 16
11 C 0.14 2.96 2.62 44.99 0.12 3.08 16
12 H 0.07 1.88 7.58 -2.38 -0.02 1.86 16
13 C -0.16 -2.76 9.00 71.98 0.65 -2.11 16
14 N -0.71 -17.13 4.99 -442.55 -2.21 -19.34 16
15 C 0.54 19.23 7.81 87.66 0.68 19.91 16
16 O -0.56 -25.04 15.53 -3.06 -0.05 -25.09 16
17 C -0.13 -5.11 6.16 71.24 0.44 -4.68 16
18 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16
19 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16
20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16
21 C 0.01 0.74 5.49 84.86 0.47 1.20 16
22 N -0.91 -55.87 13.22 21.65 0.29 -55.59 16
23 Si 1.00 43.54 29.55 68.60 2.03 45.57 16
24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16
25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
26 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16
27 C -0.15 -1.84 9.77 30.63 0.30 -1.54 16
28 C -0.14 -1.13 9.93 30.62 0.30 -0.82 16
29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16
32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.03 0.67 7.59 -2.38 -0.02 0.65 16
34 H 0.08 0.67 7.97 -2.39 -0.02 0.65 16
35 H 0.10 0.57 8.09 -2.39 -0.02 0.55 16
36 H 0.41 4.33 6.41 -92.71 -0.59 3.74 16
37 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16
38 H 0.08 0.95 6.57 -2.38 -0.02 0.93 16
39 H 0.08 0.98 6.29 -2.39 -0.02 0.96 16
40 H 0.08 1.11 6.56 -2.39 -0.02 1.10 16
41 H 0.09 0.98 6.29 -2.39 -0.02 0.97 16
42 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16
43 H 0.41 7.51 6.58 -92.71 -0.61 6.90 16
44 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16
45 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16
46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16
47 H 0.08 1.39 7.85 -2.39 -0.02 1.37 16
48 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16
49 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16
50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
Total: -1.00 -80.74 418.41 2.26 -78.48
By element:
Atomic # 1 Polarization: 23.91 SS G_CDS: -0.26 Total: 23.64 kcal
Atomic # 6 Polarization: -14.72 SS G_CDS: 5.88 Total: -8.84 kcal
Atomic # 7 Polarization: -83.91 SS G_CDS: -4.12 Total: -88.03 kcal
Atomic # 8 Polarization: -41.41 SS G_CDS: -0.10 Total: -41.50 kcal
Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal
Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal
Total: -80.74 2.26 -78.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001285297585.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.745 kcal
(2) G-P(sol) polarization free energy of solvation -80.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.486 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.478 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds