Wall clock time and date at job start Sat Apr 11 2020 06:39:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52990 * 109.47262 * 2 1
4 4 C 1.53001 * 109.47562 * 179.97438 * 3 2 1
5 5 C 1.52990 * 109.47562 * 179.97438 * 4 3 2
6 6 H 1.09000 * 109.47251 * 304.99957 * 5 4 3
7 7 C 1.53003 * 109.47154 * 64.99881 * 5 4 3
8 8 C 1.50704 * 109.47249 * 184.99910 * 5 4 3
9 9 O 1.21279 * 119.99767 * 334.11656 * 8 5 4
10 10 N 1.34775 * 119.99803 * 154.11817 * 8 5 4
11 11 C 1.47020 * 125.65305 * 354.66992 * 10 8 5
12 12 C 1.54324 * 107.27545 * 178.92390 * 11 10 8
13 13 C 1.55161 * 102.93717 * 337.80877 * 12 11 10
14 14 H 1.08997 * 111.00424 * 277.38574 * 13 12 11
15 15 N 1.46506 * 110.99988 * 153.57920 * 13 12 11
16 16 C 1.34770 * 120.00010 * 86.45211 * 15 13 12
17 17 O 1.21276 * 120.00293 * 359.97438 * 16 15 13
18 18 C 1.50706 * 119.99951 * 179.97438 * 16 15 13
19 19 S 1.80995 * 109.47488 * 180.02562 * 18 16 15
20 20 C 1.76190 * 100.00201 * 180.02562 * 19 18 16
21 21 H 1.07999 * 120.00018 * 0.02562 * 20 19 18
22 22 C 1.38802 * 120.00114 * 180.02562 * 20 19 18
23 23 N 1.31632 * 120.00138 * 359.97438 * 22 20 19
24 24 Si 1.86799 * 120.00166 * 180.02562 * 22 20 19
25 25 H 1.48505 * 109.46999 * 59.99748 * 24 22 20
26 26 H 1.48497 * 109.47052 * 299.99836 * 24 22 20
27 27 H 1.48499 * 109.47103 * 179.97438 * 24 22 20
28 28 C 1.47429 * 125.64699 * 174.65336 * 10 8 5
29 29 H 1.08997 * 109.46567 * 60.00031 * 1 2 3
30 30 H 1.08994 * 109.46859 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.46850 * 300.00100 * 1 2 3
32 32 H 1.08998 * 109.46850 * 239.99900 * 2 1 3
33 33 H 1.09002 * 109.46795 * 120.00358 * 2 1 3
34 34 H 1.09004 * 109.47470 * 59.99758 * 3 2 1
35 35 H 1.09002 * 109.47507 * 299.99922 * 3 2 1
36 36 H 1.09004 * 109.46923 * 59.99426 * 4 3 2
37 37 H 1.09002 * 109.46648 * 300.00451 * 4 3 2
38 38 H 1.09000 * 109.47201 * 184.33369 * 7 5 4
39 39 H 1.08999 * 109.46960 * 304.33492 * 7 5 4
40 40 H 1.08999 * 109.46647 * 64.33479 * 7 5 4
41 41 H 1.09002 * 109.87811 * 59.50335 * 11 10 8
42 42 H 1.09001 * 109.88152 * 298.34142 * 11 10 8
43 43 H 1.08999 * 110.72203 * 219.44931 * 12 11 10
44 44 H 1.08997 * 110.87347 * 96.23606 * 12 11 10
45 45 H 0.96999 * 119.99803 * 266.44774 * 15 13 12
46 46 H 1.09000 * 109.46829 * 59.99761 * 18 16 15
47 47 H 1.09004 * 109.47007 * 300.00727 * 18 16 15
48 48 H 0.97004 * 119.99229 * 359.97438 * 23 22 20
49 49 H 1.08995 * 110.37047 * 85.30644 * 28 10 8
50 50 H 1.09005 * 110.36571 * 322.98498 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 3.5701 1.4425 0.0006
5 6 4.0801 2.8849 0.0000
6 1 3.6459 3.4234 -0.8423
7 6 3.6748 3.5697 1.3068
8 6 5.5821 2.8866 -0.1232
9 8 6.2228 1.9296 0.2572
10 7 6.2133 3.9516 -0.6560
11 6 5.5591 5.1242 -1.2548
12 6 6.6744 6.0920 -1.7031
13 6 7.8784 5.6668 -0.8216
14 1 7.8214 6.1259 0.1654
15 7 9.1485 5.9911 -1.4758
16 6 9.6925 7.2145 -1.3223
17 8 9.1304 8.0472 -0.6429
18 6 10.9993 7.5479 -1.9948
19 16 11.4640 9.2519 -1.5994
20 6 12.9806 9.3697 -2.4884
21 1 13.3433 8.5229 -3.0520
22 6 13.7091 10.5509 -2.4646
23 7 13.2668 11.5833 -1.7781
24 14 15.3166 10.6761 -3.4078
25 1 15.0629 10.4401 -4.8518
26 1 16.2694 9.6567 -2.8996
27 1 15.8952 12.0311 -3.2223
28 6 7.6741 4.1338 -0.7345
29 1 -0.3632 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5139 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6768 1.9563 -0.8900
36 1 3.9338 0.9284 -0.8891
37 1 3.9330 0.9287 0.8909
38 1 3.9705 4.6183 1.2744
39 1 2.5943 3.5006 1.4333
40 1 4.1708 3.0780 2.1436
41 1 4.9212 5.6101 -0.5164
42 1 4.9657 4.8179 -2.1163
43 1 6.3933 7.1253 -1.4995
44 1 6.9038 5.9573 -2.7601
45 1 9.5980 5.3252 -2.0194
46 1 10.8899 7.4419 -3.0741
47 1 11.7744 6.8686 -1.6397
48 1 12.4314 11.5186 -1.2893
49 1 8.0698 3.6472 -1.6260
50 1 8.1545 3.7372 0.1600
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001294702357.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:27
Heat of formation + Delta-G solvation = -128.298700 kcal
Electronic energy + Delta-G solvation = -26816.976919 eV
Core-core repulsion = 22968.059509 eV
Total energy + Delta-G solvation = -3848.917410 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.58468 -40.65883 -38.73029 -37.23898 -35.45727 -34.74171 -34.27446 -32.24958
-30.81507 -29.83870 -29.05391 -27.07862 -26.28191 -24.72842 -23.02794 -22.47470
-21.77782 -21.60112 -20.43601 -19.91574 -18.43617 -18.21231 -17.72247 -16.93264
-16.67091 -16.53794 -16.46984 -15.99603 -15.68588 -15.26127 -15.12155 -14.92057
-14.69371 -14.50472 -14.48580 -14.24703 -13.96410 -13.87224 -13.81769 -13.67136
-13.42999 -13.08681 -12.95727 -12.73305 -12.67236 -12.61126 -12.24223 -11.96462
-11.95279 -11.89258 -11.82121 -11.55911 -11.54294 -11.34815 -11.11727 -11.09130
-10.79627 -10.32327 -10.26106 -9.79709 -8.91714 -8.85906 -6.26836 1.15494
1.46743 1.50270 1.52826 1.61056 1.71434 1.81503 2.26145 2.35906
3.03051 3.13047 3.20262 3.45555 3.64490 3.73508 3.81457 3.87511
3.95874 4.11612 4.16363 4.17865 4.20254 4.25793 4.27570 4.39122
4.45107 4.53631 4.59290 4.66160 4.72761 4.77213 4.79425 4.89027
4.94453 4.97018 5.01017 5.01874 5.06287 5.13547 5.21921 5.26162
5.35589 5.38636 5.46942 5.53248 5.65016 6.15885 6.33051 6.39998
7.02788 7.06551 7.10794 8.51860
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.044226 B = 0.001521 C = 0.001503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 632.956872 B =18400.871585 C =18624.088196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.128 4.128
3 C -0.114 4.114
4 C -0.099 4.099
5 C -0.099 4.099
6 H 0.117 0.883
7 C -0.141 4.141
8 C 0.529 3.471
9 O -0.584 6.584
10 N -0.618 5.618
11 C 0.105 3.895
12 C -0.140 4.140
13 C 0.136 3.864
14 H 0.083 0.917
15 N -0.702 5.702
16 C 0.540 3.460
17 O -0.558 6.558
18 C -0.111 4.111
19 S -0.192 6.192
20 C -0.615 4.615
21 H 0.075 0.925
22 C -0.017 4.017
23 N -0.913 5.913
24 Si 1.135 2.865
25 H -0.263 1.263
26 H -0.264 1.264
27 H -0.281 1.281
28 C 0.107 3.893
29 H 0.058 0.942
30 H 0.053 0.947
31 H 0.057 0.943
32 H 0.057 0.943
33 H 0.055 0.945
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.065 0.935
39 H 0.093 0.907
40 H 0.045 0.955
41 H 0.089 0.911
42 H 0.099 0.901
43 H 0.082 0.918
44 H 0.092 0.908
45 H 0.419 0.581
46 H 0.115 0.885
47 H 0.111 0.889
48 H 0.261 0.739
49 H 0.089 0.911
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.934 -22.627 -0.797 33.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.166 4.166
3 C -0.151 4.151
4 C -0.137 4.137
5 C -0.120 4.120
6 H 0.135 0.865
7 C -0.198 4.198
8 C 0.320 3.680
9 O -0.463 6.463
10 N -0.352 5.352
11 C -0.018 4.018
12 C -0.179 4.179
13 C 0.030 3.970
14 H 0.101 0.899
15 N -0.356 5.356
16 C 0.326 3.674
17 O -0.436 6.436
18 C -0.263 4.263
19 S 0.034 5.966
20 C -0.763 4.763
21 H 0.093 0.907
22 C -0.221 4.221
23 N -0.549 5.549
24 Si 0.953 3.047
25 H -0.187 1.187
26 H -0.189 1.189
27 H -0.206 1.206
28 C -0.017 4.017
29 H 0.077 0.923
30 H 0.072 0.928
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.074 0.926
34 H 0.093 0.907
35 H 0.092 0.908
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.084 0.916
39 H 0.112 0.888
40 H 0.064 0.936
41 H 0.107 0.893
42 H 0.118 0.882
43 H 0.101 0.899
44 H 0.111 0.889
45 H 0.257 0.743
46 H 0.133 0.867
47 H 0.129 0.871
48 H 0.072 0.928
49 H 0.107 0.893
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -24.369 -20.823 0.218 32.054
hybrid contribution 0.017 -2.040 -0.386 2.077
sum -24.351 -22.864 -0.168 33.403
Atomic orbital electron populations
1.21767 0.95174 1.01816 1.02146 1.21536 0.96381 0.96913 1.01722
1.21648 0.93169 0.97128 1.03180 1.21403 0.96465 0.93792 1.02032
1.21357 0.88626 0.99737 1.02281 0.86539 1.21791 1.03500 1.00225
0.94316 1.21088 0.91441 0.80169 0.75343 1.90691 1.69331 1.35279
1.51033 1.48501 1.06875 1.20238 1.59542 1.22249 0.95600 0.84577
0.99334 1.23047 0.93848 1.00082 1.00901 1.21975 0.83514 0.94351
0.97201 0.89913 1.45520 1.23678 1.13715 1.52728 1.19941 0.85400
0.82161 0.79926 1.90701 1.63466 1.48898 1.40526 1.23234 0.97852
1.00322 1.04872 1.85029 1.29297 1.13608 1.68619 1.24047 1.08777
1.05294 1.38172 0.90674 1.27781 1.06734 0.90618 0.96931 1.70927
1.22276 1.32311 1.29341 0.82734 0.69886 0.76882 0.75236 1.18746
1.18917 1.20591 1.22232 0.82294 0.93886 1.03261 0.92327 0.92769
0.92427 0.92424 0.92609 0.90725 0.90758 0.92692 0.92738 0.91574
0.88820 0.93600 0.89305 0.88241 0.89950 0.88926 0.74349 0.86720
0.87090 0.92835 0.89310 0.91003
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16
2 C -0.13 -1.20 5.93 30.59 0.18 -1.02 16
3 C -0.11 -0.96 4.97 30.59 0.15 -0.80 16
4 C -0.10 -1.29 4.14 30.59 0.13 -1.16 16
5 C -0.10 -1.20 2.29 -11.54 -0.03 -1.23 16
6 H 0.12 0.83 7.28 -2.39 -0.02 0.81 16
7 C -0.14 -1.46 9.03 71.98 0.65 -0.81 16
8 C 0.53 10.39 6.94 87.66 0.61 11.00 16
9 O -0.58 -16.63 16.51 -3.03 -0.05 -16.68 16
10 N -0.62 -10.21 3.33 -811.79 -2.70 -12.92 16
11 C 0.10 1.15 6.08 86.73 0.53 1.68 16
12 C -0.14 -2.16 6.65 31.78 0.21 -1.95 16
13 C 0.14 2.70 3.32 46.38 0.15 2.85 16
14 H 0.08 2.06 7.73 -2.39 -0.02 2.05 16
15 N -0.70 -15.56 5.23 -435.96 -2.28 -17.84 16
16 C 0.54 18.21 7.85 87.66 0.69 18.90 16
17 O -0.56 -23.86 15.61 -3.02 -0.05 -23.91 16
18 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16
19 S -0.19 -10.29 19.60 -56.49 -1.11 -11.40 16
20 C -0.62 -34.89 9.50 67.95 0.65 -34.24 16
21 H 0.08 3.98 7.80 -2.91 -0.02 3.96 16
22 C -0.02 -0.99 5.49 84.86 0.47 -0.53 16
23 N -0.91 -57.45 13.67 21.65 0.30 -57.15 16
24 Si 1.13 48.64 29.92 68.60 2.05 50.69 16
25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16
26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16
27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16
28 C 0.11 1.89 6.51 86.85 0.57 2.46 16
29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16
30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16
31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16
32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.07 0.52 6.48 -2.38 -0.02 0.51 16
35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16
36 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16
37 H 0.05 0.93 8.03 -2.39 -0.02 0.91 16
38 H 0.07 0.63 7.60 -2.39 -0.02 0.61 16
39 H 0.09 0.60 6.37 -2.39 -0.02 0.58 16
40 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.09 0.78 7.60 -2.39 -0.02 0.76 16
42 H 0.10 0.66 8.01 -2.39 -0.02 0.64 16
43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
45 H 0.42 6.50 8.51 -92.71 -0.79 5.71 16
46 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16
47 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16
48 H 0.26 17.02 7.12 -92.71 -0.66 16.36 16
49 H 0.09 1.33 8.00 -2.39 -0.02 1.31 16
50 H 0.07 1.50 8.09 -2.38 -0.02 1.48 16
Total: -1.00 -81.15 416.28 2.50 -78.65
By element:
Atomic # 1 Polarization: 19.35 SS G_CDS: 0.24 Total: 19.59 kcal
Atomic # 6 Polarization: -15.13 SS G_CDS: 6.10 Total: -9.03 kcal
Atomic # 7 Polarization: -83.23 SS G_CDS: -4.68 Total: -87.91 kcal
Atomic # 8 Polarization: -40.49 SS G_CDS: -0.10 Total: -40.59 kcal
Atomic # 14 Polarization: 48.64 SS G_CDS: 2.05 Total: 50.69 kcal
Atomic # 16 Polarization: -10.29 SS G_CDS: -1.11 Total: -11.40 kcal
Total: -81.15 2.50 -78.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001294702357.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.649 kcal
(2) G-P(sol) polarization free energy of solvation -81.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds