Wall clock time and date at job start Sat Apr 11 2020 06:39:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.46607 * 2 1
4 4 C 1.52999 * 109.47111 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47434 * 179.97438 * 4 3 2
6 6 H 1.09000 * 109.47061 * 54.99435 * 5 4 3
7 7 C 1.52999 * 109.46953 * 294.99840 * 5 4 3
8 8 C 1.50702 * 109.47132 * 175.00189 * 5 4 3
9 9 O 1.21275 * 119.99979 * 26.14522 * 8 5 4
10 10 N 1.34779 * 119.99644 * 206.14813 * 8 5 4
11 11 C 1.47018 * 125.64900 * 354.87447 * 10 8 5
12 12 C 1.54326 * 107.27068 * 178.98217 * 11 10 8
13 13 C 1.55151 * 102.94286 * 337.81026 * 12 11 10
14 14 H 1.09000 * 111.00511 * 277.38873 * 13 12 11
15 15 N 1.46497 * 111.00690 * 153.57589 * 13 12 11
16 16 C 1.34768 * 120.00279 * 86.44994 * 15 13 12
17 17 O 1.21277 * 120.00248 * 0.02562 * 16 15 13
18 18 C 1.50703 * 120.00039 * 180.02562 * 16 15 13
19 19 S 1.81008 * 109.47001 * 180.02562 * 18 16 15
20 20 C 1.76202 * 99.99992 * 179.97438 * 19 18 16
21 21 H 1.08010 * 119.99847 * 0.02562 * 20 19 18
22 22 C 1.38795 * 120.00236 * 180.02562 * 20 19 18
23 23 N 1.31625 * 120.00457 * 180.02562 * 22 20 19
24 24 Si 1.86803 * 120.00017 * 359.97438 * 22 20 19
25 25 H 1.48500 * 109.46898 * 89.99845 * 24 22 20
26 26 H 1.48507 * 109.47117 * 330.00474 * 24 22 20
27 27 H 1.48495 * 109.47583 * 210.00354 * 24 22 20
28 28 C 1.47426 * 125.64349 * 174.92239 * 10 8 5
29 29 H 1.09003 * 109.47419 * 299.99613 * 1 2 3
30 30 H 1.08998 * 109.47330 * 60.00458 * 1 2 3
31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46950 * 240.00262 * 2 1 3
33 33 H 1.08998 * 109.47330 * 119.99541 * 2 1 3
34 34 H 1.08996 * 109.47536 * 60.00029 * 3 2 1
35 35 H 1.09008 * 109.47370 * 300.00055 * 3 2 1
36 36 H 1.09003 * 109.47276 * 60.00166 * 4 3 2
37 37 H 1.08998 * 109.46997 * 300.00186 * 4 3 2
38 38 H 1.09000 * 109.47560 * 306.01447 * 7 5 4
39 39 H 1.09008 * 109.47222 * 66.01208 * 7 5 4
40 40 H 1.09003 * 109.47316 * 186.01178 * 7 5 4
41 41 H 1.08999 * 109.88284 * 59.56727 * 11 10 8
42 42 H 1.08998 * 110.01077 * 298.47448 * 11 10 8
43 43 H 1.08993 * 110.72296 * 219.44161 * 12 11 10
44 44 H 1.09001 * 110.71584 * 96.16969 * 12 11 10
45 45 H 0.97001 * 119.99809 * 266.45258 * 15 13 12
46 46 H 1.08993 * 109.47422 * 60.00359 * 18 16 15
47 47 H 1.09004 * 109.47174 * 299.99583 * 18 16 15
48 48 H 0.96999 * 120.00793 * 179.97438 * 23 22 20
49 49 H 1.09001 * 110.36324 * 85.25090 * 28 10 8
50 50 H 1.08992 * 110.37087 * 322.92462 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4427 -0.0006
5 6 4.0798 2.8852 -0.0013
6 1 3.6455 3.4245 0.8405
7 6 3.6745 3.5688 -1.3087
8 6 5.5818 2.8871 0.1219
9 8 6.2229 1.9319 -0.2620
10 7 6.2126 3.9504 0.6586
11 6 5.5735 5.2108 1.0644
12 6 6.6783 6.1183 1.6453
13 6 7.7800 5.1057 2.0552
14 1 7.5674 4.6712 3.0320
15 7 9.1031 5.7345 2.0401
16 6 9.5487 6.3931 3.1282
17 8 8.8546 6.4648 4.1202
18 6 10.9096 7.0404 3.1124
19 16 11.2165 7.8386 4.7077
20 6 12.8266 8.4929 4.4177
21 1 13.3096 8.3361 3.4644
22 6 13.4744 9.2097 5.4142
23 7 14.6769 9.6989 5.1975
24 14 12.6388 9.4814 7.0628
25 1 12.9854 8.3684 7.9827
26 1 11.1669 9.5246 6.8706
27 1 13.0998 10.7671 7.6455
28 6 7.6577 4.0425 0.9352
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 1.6766 1.9564 0.8899
35 1 1.6765 1.9564 -0.8900
36 1 3.9329 0.9290 -0.8909
37 1 3.9336 0.9287 0.8891
38 1 4.0182 2.9712 -2.1530
39 1 2.5892 3.6631 -1.3482
40 1 4.1272 4.5592 -1.3564
41 1 4.8170 5.0150 1.8242
42 1 5.1151 5.6915 0.2003
43 1 6.3120 6.6630 2.5154
44 1 7.0503 6.8068 0.8865
45 1 9.6584 5.6769 1.2469
46 1 10.9477 7.7867 2.3191
47 1 11.6710 6.2811 2.9341
48 1 15.1295 10.2001 5.8937
49 1 8.1946 4.3671 0.0439
50 1 8.0399 3.0820 1.2806
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001294702358.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:31
Heat of formation + Delta-G solvation = -99.630028 kcal
Electronic energy + Delta-G solvation = -26841.066538 eV
Core-core repulsion = 22993.392295 eV
Total energy + Delta-G solvation = -3847.674243 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.74961 -39.47649 -37.81521 -36.63504 -34.38488 -33.71334 -32.46675 -31.22509
-29.78279 -29.19385 -28.13988 -25.78424 -25.61468 -24.03024 -22.37133 -21.66860
-21.08918 -20.59610 -19.22609 -17.98095 -17.61316 -17.07971 -16.41953 -16.08671
-15.83880 -15.35448 -15.13410 -14.97225 -14.83726 -14.39396 -14.13230 -13.92139
-13.72996 -13.71529 -13.44243 -13.28598 -13.10475 -12.82400 -12.75684 -12.64322
-12.45356 -12.18107 -12.07802 -11.77648 -11.72923 -11.44137 -11.34161 -11.29568
-11.17479 -11.07388 -11.03282 -10.90113 -10.64873 -10.03348 -9.88884 -9.63441
-9.16510 -9.03859 -9.01817 -8.54399 -6.95575 -6.31452 -4.03821 2.27213
2.40027 2.78021 2.84846 3.27629 3.31811 3.47633 3.60291 3.92702
4.19697 4.22668 4.30442 4.35138 4.42291 4.60352 4.67656 4.69035
4.70645 4.72328 4.83303 4.86505 4.94659 5.03957 5.07673 5.14124
5.20352 5.23464 5.26524 5.34210 5.37548 5.41084 5.47352 5.47399
5.51871 5.64055 5.68000 5.69375 5.72286 5.76837 5.80788 5.86996
5.90757 5.96696 5.98351 6.40507 7.10042 7.47632 7.80693 7.91421
8.37206 8.39127 9.14570 10.77766
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032595 B = 0.001605 C = 0.001578
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.822587 B =17443.656026 C =17743.955341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.126 4.126
3 C -0.120 4.120
4 C -0.103 4.103
5 C -0.106 4.106
6 H 0.092 0.908
7 C -0.142 4.142
8 C 0.535 3.465
9 O -0.537 6.537
10 N -0.618 5.618
11 C 0.102 3.898
12 C -0.146 4.146
13 C 0.137 3.863
14 H 0.104 0.896
15 N -0.728 5.728
16 C 0.535 3.465
17 O -0.516 6.516
18 C -0.125 4.125
19 S -0.141 6.141
20 C -0.523 4.523
21 H 0.088 0.912
22 C 0.097 3.903
23 N -0.880 5.880
24 Si 0.857 3.143
25 H -0.267 1.267
26 H -0.235 1.235
27 H -0.274 1.274
28 C 0.102 3.898
29 H 0.053 0.947
30 H 0.053 0.947
31 H 0.053 0.947
32 H 0.062 0.938
33 H 0.061 0.939
34 H 0.062 0.938
35 H 0.065 0.935
36 H 0.074 0.926
37 H 0.066 0.934
38 H 0.063 0.937
39 H 0.071 0.929
40 H 0.058 0.942
41 H 0.073 0.927
42 H 0.073 0.927
43 H 0.092 0.908
44 H 0.083 0.917
45 H 0.402 0.598
46 H 0.098 0.902
47 H 0.098 0.902
48 H 0.271 0.729
49 H 0.074 0.926
50 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.696 -14.138 -14.302 33.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.163 4.163
3 C -0.158 4.158
4 C -0.140 4.140
5 C -0.127 4.127
6 H 0.110 0.890
7 C -0.200 4.200
8 C 0.324 3.676
9 O -0.413 6.413
10 N -0.353 5.353
11 C -0.022 4.022
12 C -0.185 4.185
13 C 0.031 3.969
14 H 0.122 0.878
15 N -0.382 5.382
16 C 0.321 3.679
17 O -0.390 6.390
18 C -0.275 4.275
19 S 0.086 5.914
20 C -0.670 4.670
21 H 0.106 0.894
22 C -0.112 4.112
23 N -0.516 5.516
24 Si 0.681 3.319
25 H -0.192 1.192
26 H -0.159 1.159
27 H -0.199 1.199
28 C -0.022 4.022
29 H 0.072 0.928
30 H 0.072 0.928
31 H 0.072 0.928
32 H 0.081 0.919
33 H 0.080 0.920
34 H 0.081 0.919
35 H 0.084 0.916
36 H 0.092 0.908
37 H 0.084 0.916
38 H 0.082 0.918
39 H 0.090 0.910
40 H 0.077 0.923
41 H 0.091 0.909
42 H 0.091 0.909
43 H 0.111 0.889
44 H 0.101 0.899
45 H 0.237 0.763
46 H 0.117 0.883
47 H 0.116 0.884
48 H 0.081 0.919
49 H 0.092 0.908
50 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -27.386 -14.497 -12.812 33.530
hybrid contribution 1.092 0.292 -0.769 1.367
sum -26.294 -14.204 -13.580 32.826
Atomic orbital electron populations
1.21778 0.95883 1.01610 1.01759 1.21526 0.95778 0.96820 1.02215
1.21673 0.94809 0.97060 1.02226 1.21470 0.95146 0.93902 1.03532
1.21309 0.91133 0.99476 1.00788 0.88987 1.21775 1.02182 1.00354
0.95647 1.20438 0.90085 0.80759 0.76350 1.90713 1.68095 1.34351
1.48181 1.48415 1.08555 1.15495 1.62858 1.22110 0.96430 0.83932
0.99699 1.23106 0.95286 0.97860 1.02218 1.21943 0.83151 0.92270
0.99569 0.87808 1.45820 1.17998 1.56989 1.17419 1.20307 0.87959
0.77459 0.82174 1.90703 1.57690 1.58211 1.32368 1.23285 0.95684
1.03183 1.05381 1.84787 1.23753 1.68340 1.14568 1.22313 0.99778
1.39975 1.04957 0.89361 1.24705 0.94189 0.93768 0.98567 1.69932
1.12497 1.34667 1.34524 0.86740 0.82551 0.78661 0.83917 1.19197
1.15949 1.19913 1.22344 0.82095 1.00083 0.97668 0.92764 0.92788
0.92819 0.91950 0.91985 0.91928 0.91616 0.90759 0.91568 0.91791
0.91039 0.92250 0.90866 0.90884 0.88904 0.89881 0.76325 0.88327
0.88352 0.91908 0.90792 0.89565
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16
2 C -0.13 -0.67 5.93 -26.73 -0.16 -0.83 16
3 C -0.12 -0.63 4.97 -26.73 -0.13 -0.76 16
4 C -0.10 -0.72 4.14 -26.73 -0.11 -0.83 16
5 C -0.11 -0.72 2.20 -91.77 -0.20 -0.92 16
6 H 0.09 0.50 7.23 -51.93 -0.38 0.13 16
7 C -0.14 -0.77 8.78 37.16 0.33 -0.45 16
8 C 0.53 5.42 6.94 -10.98 -0.08 5.35 16
9 O -0.54 -7.49 16.51 5.56 0.09 -7.40 16
10 N -0.62 -5.51 3.33 -170.52 -0.57 -6.08 16
11 C 0.10 0.68 6.31 -3.06 -0.02 0.66 16
12 C -0.15 -1.22 6.65 -24.90 -0.17 -1.38 16
13 C 0.14 1.38 3.32 -65.78 -0.22 1.17 16
14 H 0.10 1.24 7.73 -51.93 -0.40 0.84 16
15 N -0.73 -8.26 5.23 -51.73 -0.27 -8.53 16
16 C 0.53 8.76 7.85 -10.99 -0.09 8.67 16
17 O -0.52 -10.35 15.61 5.56 0.09 -10.27 16
18 C -0.12 -2.29 6.16 36.01 0.22 -2.06 16
19 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16
20 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16
21 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16
22 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16
23 N -0.88 -26.28 13.97 55.49 0.78 -25.51 16
24 Si 0.86 21.48 27.74 -169.99 -4.71 16.76 16
25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
26 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16
27 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
28 C 0.10 0.93 6.51 -2.53 -0.02 0.92 16
29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16
30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16
32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
35 H 0.07 0.30 6.70 -51.92 -0.35 -0.04 16
36 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16
37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
39 H 0.07 0.28 6.87 -51.92 -0.36 -0.07 16
40 H 0.06 0.30 7.25 -51.93 -0.38 -0.07 16
41 H 0.07 0.42 7.68 -51.93 -0.40 0.02 16
42 H 0.07 0.38 7.25 -51.93 -0.38 0.00 16
43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16
44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
45 H 0.40 3.47 8.51 -40.82 -0.35 3.13 16
46 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16
47 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16
48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
49 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16
50 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16
LS Contribution 414.46 15.07 6.25 6.25
Total: -1.00 -34.91 414.46 -9.29 -44.20
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: -8.88 Total: -1.33 kcal
Atomic # 6 Polarization: -2.58 SS G_CDS: -0.06 Total: -2.63 kcal
Atomic # 7 Polarization: -40.05 SS G_CDS: -0.06 Total: -40.11 kcal
Atomic # 8 Polarization: -17.85 SS G_CDS: 0.18 Total: -17.67 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal
Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal
Total LS contribution 6.25 Total: 6.25 kcal
Total: -34.91 -9.29 -44.20 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001294702358.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.432 kcal
(2) G-P(sol) polarization free energy of solvation -34.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.345 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds