Wall clock time and date at job start Sat Apr 11 2020 06:39:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.46607 * 2 1
4 4 C 1.52999 * 109.47111 * 180.02562 * 3 2 1
5 5 C 1.53004 * 109.47434 * 179.97438 * 4 3 2
6 6 H 1.09000 * 109.47061 * 54.99435 * 5 4 3
7 7 C 1.52999 * 109.46953 * 294.99840 * 5 4 3
8 8 C 1.50702 * 109.47132 * 175.00189 * 5 4 3
9 9 O 1.21275 * 119.99979 * 26.14522 * 8 5 4
10 10 N 1.34779 * 119.99644 * 206.14813 * 8 5 4
11 11 C 1.47018 * 125.64900 * 354.87447 * 10 8 5
12 12 C 1.54326 * 107.27068 * 178.98217 * 11 10 8
13 13 C 1.55151 * 102.94286 * 337.81026 * 12 11 10
14 14 H 1.09000 * 111.00511 * 277.38873 * 13 12 11
15 15 N 1.46497 * 111.00690 * 153.57589 * 13 12 11
16 16 C 1.34768 * 120.00279 * 86.44994 * 15 13 12
17 17 O 1.21277 * 120.00248 * 0.02562 * 16 15 13
18 18 C 1.50703 * 120.00039 * 180.02562 * 16 15 13
19 19 S 1.81008 * 109.47001 * 180.02562 * 18 16 15
20 20 C 1.76202 * 99.99992 * 179.97438 * 19 18 16
21 21 H 1.08010 * 119.99847 * 0.02562 * 20 19 18
22 22 C 1.38795 * 120.00236 * 180.02562 * 20 19 18
23 23 N 1.31625 * 120.00457 * 180.02562 * 22 20 19
24 24 Si 1.86803 * 120.00017 * 359.97438 * 22 20 19
25 25 H 1.48500 * 109.46898 * 89.99845 * 24 22 20
26 26 H 1.48507 * 109.47117 * 330.00474 * 24 22 20
27 27 H 1.48495 * 109.47583 * 210.00354 * 24 22 20
28 28 C 1.47426 * 125.64349 * 174.92239 * 10 8 5
29 29 H 1.09003 * 109.47419 * 299.99613 * 1 2 3
30 30 H 1.08998 * 109.47330 * 60.00458 * 1 2 3
31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46950 * 240.00262 * 2 1 3
33 33 H 1.08998 * 109.47330 * 119.99541 * 2 1 3
34 34 H 1.08996 * 109.47536 * 60.00029 * 3 2 1
35 35 H 1.09008 * 109.47370 * 300.00055 * 3 2 1
36 36 H 1.09003 * 109.47276 * 60.00166 * 4 3 2
37 37 H 1.08998 * 109.46997 * 300.00186 * 4 3 2
38 38 H 1.09000 * 109.47560 * 306.01447 * 7 5 4
39 39 H 1.09008 * 109.47222 * 66.01208 * 7 5 4
40 40 H 1.09003 * 109.47316 * 186.01178 * 7 5 4
41 41 H 1.08999 * 109.88284 * 59.56727 * 11 10 8
42 42 H 1.08998 * 110.01077 * 298.47448 * 11 10 8
43 43 H 1.08993 * 110.72296 * 219.44161 * 12 11 10
44 44 H 1.09001 * 110.71584 * 96.16969 * 12 11 10
45 45 H 0.97001 * 119.99809 * 266.45258 * 15 13 12
46 46 H 1.08993 * 109.47422 * 60.00359 * 18 16 15
47 47 H 1.09004 * 109.47174 * 299.99583 * 18 16 15
48 48 H 0.96999 * 120.00793 * 179.97438 * 23 22 20
49 49 H 1.09001 * 110.36324 * 85.25090 * 28 10 8
50 50 H 1.08992 * 110.37087 * 322.92462 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4427 -0.0006
5 6 4.0798 2.8852 -0.0013
6 1 3.6455 3.4245 0.8405
7 6 3.6745 3.5688 -1.3087
8 6 5.5818 2.8871 0.1219
9 8 6.2229 1.9319 -0.2620
10 7 6.2126 3.9504 0.6586
11 6 5.5735 5.2108 1.0644
12 6 6.6783 6.1183 1.6453
13 6 7.7800 5.1057 2.0552
14 1 7.5674 4.6712 3.0320
15 7 9.1031 5.7345 2.0401
16 6 9.5487 6.3931 3.1282
17 8 8.8546 6.4648 4.1202
18 6 10.9096 7.0404 3.1124
19 16 11.2165 7.8386 4.7077
20 6 12.8266 8.4929 4.4177
21 1 13.3096 8.3361 3.4644
22 6 13.4744 9.2097 5.4142
23 7 14.6769 9.6989 5.1975
24 14 12.6388 9.4814 7.0628
25 1 12.9854 8.3684 7.9827
26 1 11.1669 9.5246 6.8706
27 1 13.0998 10.7671 7.6455
28 6 7.6577 4.0425 0.9352
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5137 0.8900
34 1 1.6766 1.9564 0.8899
35 1 1.6765 1.9564 -0.8900
36 1 3.9329 0.9290 -0.8909
37 1 3.9336 0.9287 0.8891
38 1 4.0182 2.9712 -2.1530
39 1 2.5892 3.6631 -1.3482
40 1 4.1272 4.5592 -1.3564
41 1 4.8170 5.0150 1.8242
42 1 5.1151 5.6915 0.2003
43 1 6.3120 6.6630 2.5154
44 1 7.0503 6.8068 0.8865
45 1 9.6584 5.6769 1.2469
46 1 10.9477 7.7867 2.3191
47 1 11.6710 6.2811 2.9341
48 1 15.1295 10.2001 5.8937
49 1 8.1946 4.3671 0.0439
50 1 8.0399 3.0820 1.2806
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001294702358.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:30
Heat of formation + Delta-G solvation = -122.338917 kcal
Electronic energy + Delta-G solvation = -26842.051269 eV
Core-core repulsion = 22993.392295 eV
Total energy + Delta-G solvation = -3848.658974 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.55289 -40.61382 -38.69188 -37.21991 -35.41231 -34.66639 -34.26337 -32.20300
-30.76564 -29.84001 -28.97596 -27.84159 -26.28645 -24.69357 -22.99640 -22.45927
-21.73102 -21.60197 -19.94065 -19.87387 -18.38150 -18.12906 -17.62912 -17.09162
-16.73341 -16.58344 -16.42144 -16.23079 -15.74391 -15.34141 -14.97677 -14.86967
-14.81084 -14.64830 -14.43558 -14.24053 -13.92440 -13.77177 -13.70597 -13.34866
-13.33767 -13.12079 -13.01627 -12.89480 -12.71336 -12.60988 -12.54930 -12.24243
-11.91920 -11.89095 -11.85853 -11.81160 -11.53604 -11.34885 -11.16661 -11.05847
-10.77451 -10.53150 -10.21079 -9.76889 -8.98606 -8.50937 -6.21702 0.97970
1.32303 1.44140 1.50235 1.53570 1.55705 1.77810 2.24810 2.32038
2.72054 2.87617 3.23150 3.49008 3.66890 3.74611 3.83877 3.91388
3.97262 4.15780 4.19004 4.22105 4.24635 4.26507 4.29450 4.46874
4.48789 4.56383 4.61260 4.69688 4.74100 4.80011 4.84716 4.91346
4.95883 4.98991 5.03413 5.06510 5.07348 5.16172 5.22965 5.28292
5.37538 5.41369 5.47037 5.53243 5.71088 6.12169 6.36564 6.43592
6.94348 7.05342 7.14930 8.61461
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032595 B = 0.001605 C = 0.001578
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.822587 B =17443.656026 C =17743.955341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.129 4.129
3 C -0.113 4.113
4 C -0.100 4.100
5 C -0.100 4.100
6 H 0.113 0.887
7 C -0.139 4.139
8 C 0.528 3.472
9 O -0.584 6.584
10 N -0.618 5.618
11 C 0.104 3.896
12 C -0.140 4.140
13 C 0.137 3.863
14 H 0.085 0.915
15 N -0.704 5.704
16 C 0.542 3.458
17 O -0.556 6.556
18 C -0.113 4.113
19 S -0.173 6.173
20 C -0.530 4.530
21 H 0.062 0.938
22 C 0.046 3.954
23 N -0.918 5.918
24 Si 0.914 3.086
25 H -0.264 1.264
26 H -0.235 1.235
27 H -0.260 1.260
28 C 0.106 3.894
29 H 0.056 0.944
30 H 0.059 0.941
31 H 0.053 0.947
32 H 0.057 0.943
33 H 0.054 0.946
34 H 0.071 0.929
35 H 0.077 0.923
36 H 0.056 0.944
37 H 0.049 0.951
38 H 0.050 0.950
39 H 0.092 0.908
40 H 0.067 0.933
41 H 0.089 0.911
42 H 0.098 0.902
43 H 0.085 0.915
44 H 0.092 0.908
45 H 0.418 0.582
46 H 0.117 0.883
47 H 0.113 0.887
48 H 0.277 0.723
49 H 0.088 0.912
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.257 -13.727 -15.006 35.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.166 4.166
3 C -0.150 4.150
4 C -0.138 4.138
5 C -0.121 4.121
6 H 0.131 0.869
7 C -0.196 4.196
8 C 0.319 3.681
9 O -0.464 6.464
10 N -0.352 5.352
11 C -0.018 4.018
12 C -0.178 4.178
13 C 0.030 3.970
14 H 0.103 0.897
15 N -0.358 5.358
16 C 0.328 3.672
17 O -0.433 6.433
18 C -0.264 4.264
19 S 0.054 5.946
20 C -0.678 4.678
21 H 0.080 0.920
22 C -0.159 4.159
23 N -0.556 5.556
24 Si 0.736 3.264
25 H -0.188 1.188
26 H -0.159 1.159
27 H -0.184 1.184
28 C -0.018 4.018
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.072 0.928
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.090 0.910
35 H 0.095 0.905
36 H 0.075 0.925
37 H 0.068 0.932
38 H 0.069 0.931
39 H 0.111 0.889
40 H 0.086 0.914
41 H 0.107 0.893
42 H 0.117 0.883
43 H 0.103 0.897
44 H 0.111 0.889
45 H 0.256 0.744
46 H 0.135 0.865
47 H 0.131 0.869
48 H 0.086 0.914
49 H 0.106 0.894
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -29.957 -14.078 -13.560 35.770
hybrid contribution 1.895 0.066 -0.691 2.018
sum -28.062 -14.012 -14.251 34.452
Atomic orbital electron populations
1.21765 0.95127 1.01812 1.02167 1.21543 0.96429 0.96984 1.01670
1.21627 0.93135 0.97072 1.03181 1.21421 0.96512 0.93940 1.01905
1.21363 0.88614 0.99625 1.02501 0.86859 1.21781 1.03555 1.00187
0.94075 1.21091 0.91374 0.80124 0.75495 1.90690 1.69268 1.36102
1.50362 1.48501 1.08451 1.16074 1.62152 1.22260 0.95933 0.82528
1.01126 1.23054 0.94917 0.97651 1.02227 1.21966 0.82748 0.93136
0.99111 0.89670 1.45533 1.18679 1.55057 1.16493 1.19882 0.86877
0.77718 0.82749 1.90697 1.58444 1.60108 1.34090 1.23278 0.97601
1.03707 1.01785 1.84685 1.21193 1.69147 1.19615 1.22480 1.01509
1.39863 1.03934 0.91982 1.25556 0.94768 0.93618 1.01961 1.70014
1.13886 1.35711 1.35958 0.85872 0.81551 0.79150 0.79822 1.18848
1.15855 1.18405 1.22247 0.82888 0.98978 0.97692 0.92443 0.92239
0.92802 0.92465 0.92690 0.91001 0.90459 0.92521 0.93189 0.93107
0.88929 0.91437 0.89321 0.88345 0.89682 0.88942 0.74381 0.86513
0.86928 0.91396 0.89438 0.91022
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16
2 C -0.13 -1.26 5.93 30.59 0.18 -1.08 16
3 C -0.11 -0.97 4.97 30.59 0.15 -0.82 16
4 C -0.10 -1.33 4.14 30.60 0.13 -1.20 16
5 C -0.10 -1.17 2.20 -11.54 -0.03 -1.19 16
6 H 0.11 0.85 7.23 -2.39 -0.02 0.84 16
7 C -0.14 -1.14 8.78 71.98 0.63 -0.50 16
8 C 0.53 10.14 6.94 87.66 0.61 10.75 16
9 O -0.58 -16.48 16.51 -3.01 -0.05 -16.53 16
10 N -0.62 -9.82 3.33 -811.80 -2.70 -12.52 16
11 C 0.10 1.05 6.31 86.73 0.55 1.60 16
12 C -0.14 -1.97 6.65 31.78 0.21 -1.76 16
13 C 0.14 2.53 3.32 46.38 0.15 2.68 16
14 H 0.09 1.97 7.73 -2.39 -0.02 1.95 16
15 N -0.70 -14.56 5.23 -435.98 -2.28 -16.85 16
16 C 0.54 16.97 7.85 87.66 0.69 17.66 16
17 O -0.56 -21.88 15.61 -3.02 -0.05 -21.93 16
18 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16
19 S -0.17 -8.46 18.55 -56.49 -1.05 -9.51 16
20 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16
21 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16
22 C 0.05 2.69 5.50 84.86 0.47 3.15 16
23 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16
24 Si 0.91 44.32 27.74 68.60 1.90 46.22 16
25 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16
26 H -0.23 -11.27 6.74 99.48 0.67 -10.60 16
27 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16
28 C 0.11 1.79 6.51 86.86 0.57 2.36 16
29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
30 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16
31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16
32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
35 H 0.08 0.51 6.70 -2.38 -0.02 0.49 16
36 H 0.06 0.95 8.03 -2.39 -0.02 0.93 16
37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
39 H 0.09 0.39 6.87 -2.38 -0.02 0.37 16
40 H 0.07 0.46 7.25 -2.39 -0.02 0.44 16
41 H 0.09 0.69 7.68 -2.39 -0.02 0.67 16
42 H 0.10 0.59 7.25 -2.39 -0.02 0.57 16
43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
45 H 0.42 6.11 8.51 -92.71 -0.79 5.32 16
46 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16
47 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16
48 H 0.28 15.46 8.31 -92.71 -0.77 14.68 16
49 H 0.09 1.27 8.00 -2.39 -0.02 1.25 16
50 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16
Total: -1.00 -77.36 414.46 2.31 -75.05
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: 0.09 Total: 13.22 kcal
Atomic # 6 Polarization: -8.19 SS G_CDS: 6.14 Total: -2.05 kcal
Atomic # 7 Polarization: -79.80 SS G_CDS: -4.68 Total: -84.48 kcal
Atomic # 8 Polarization: -38.36 SS G_CDS: -0.10 Total: -38.45 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 1.90 Total: 46.22 kcal
Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal
Total: -77.36 2.31 -75.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001294702358.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.290 kcal
(2) G-P(sol) polarization free energy of solvation -77.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.649 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds