Wall clock time and date at job start Sat Apr 11 2020 06:39:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 C 1.53008 * 109.46688 * 2 1
4 4 C 1.53000 * 109.46517 * 185.31839 * 3 2 1
5 5 C 1.53000 * 109.47340 * 65.00086 * 4 3 2
6 6 C 1.52999 * 109.47197 * 65.32137 * 3 2 1
7 7 C 1.50693 * 109.47132 * 187.17639 * 6 3 2
8 8 O 1.21279 * 120.00187 * 356.31282 * 7 6 3
9 9 N 1.34775 * 120.00132 * 176.31406 * 7 6 3
10 10 C 1.46501 * 120.00181 * 180.02562 * 9 7 6
11 11 H 1.09000 * 110.64210 * 328.14363 * 10 9 7
12 12 C 1.55160 * 110.72146 * 204.99860 * 10 9 7
13 13 C 1.54907 * 101.57925 * 206.13701 * 12 10 9
14 14 N 1.47423 * 104.83816 * 37.00735 * 13 12 10
15 15 C 1.34774 * 125.64766 * 155.83391 * 14 13 12
16 16 O 1.21285 * 119.99873 * 180.02562 * 15 14 13
17 17 C 1.50702 * 120.00087 * 0.02779 * 15 14 13
18 18 S 1.81000 * 109.46947 * 179.97438 * 17 15 14
19 19 C 1.76192 * 100.00129 * 179.97438 * 18 17 15
20 20 H 1.08002 * 120.00246 * 0.02562 * 19 18 17
21 21 C 1.38803 * 120.00496 * 179.97438 * 19 18 17
22 22 N 1.31626 * 119.99521 * 0.02562 * 21 19 18
23 23 Si 1.86798 * 120.00160 * 180.02562 * 21 19 18
24 24 H 1.48490 * 109.47227 * 90.00208 * 23 21 19
25 25 H 1.48502 * 109.46712 * 210.00395 * 23 21 19
26 26 H 1.48502 * 109.47128 * 329.99767 * 23 21 19
27 27 C 1.47019 * 108.70033 * 335.87471 * 14 13 12
28 28 H 1.08994 * 109.47239 * 294.74797 * 1 2 3
29 29 H 1.08999 * 109.46914 * 54.74510 * 1 2 3
30 30 H 1.08996 * 109.47095 * 174.74621 * 1 2 3
31 31 H 1.08995 * 109.46893 * 119.99865 * 2 1 3
32 32 H 1.08995 * 109.47206 * 240.00166 * 2 1 3
33 33 H 1.08997 * 109.47074 * 305.31694 * 3 2 1
34 34 H 1.08999 * 109.47127 * 185.00143 * 4 3 2
35 35 H 1.08995 * 109.47550 * 304.99929 * 4 3 2
36 36 H 1.08995 * 109.47255 * 179.97438 * 5 4 3
37 37 H 1.08999 * 109.47057 * 300.00100 * 5 4 3
38 38 H 1.09007 * 109.46568 * 59.99587 * 5 4 3
39 39 H 1.09001 * 109.47131 * 307.18253 * 6 3 2
40 40 H 1.09002 * 109.47167 * 67.17312 * 6 3 2
41 41 H 0.96998 * 120.00221 * 359.97438 * 9 7 6
42 42 H 1.09003 * 110.99820 * 324.20853 * 12 10 9
43 43 H 1.08995 * 111.00565 * 88.05866 * 12 10 9
44 44 H 1.09008 * 110.36383 * 155.84933 * 13 12 10
45 45 H 1.09001 * 110.36594 * 278.05524 * 13 12 10
46 46 H 1.09000 * 109.47398 * 299.99826 * 17 15 14
47 47 H 1.08999 * 109.47127 * 60.00007 * 17 15 14
48 48 H 0.97005 * 119.99988 * 179.97438 * 22 21 19
49 49 H 1.09000 * 109.87826 * 241.64186 * 27 14 13
50 50 H 1.08999 * 109.88523 * 120.47590 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5642 1.4446 -0.1337
5 6 3.9572 0.8764 -1.4988
6 6 1.6421 2.1242 1.3107
7 6 1.9873 3.5893 1.2400
8 8 2.5614 4.0308 0.2672
9 7 1.6581 4.4092 2.2578
10 6 1.9932 5.8337 2.1888
11 1 2.9142 5.9849 1.6257
12 6 2.1144 6.4387 3.6124
13 6 1.7809 7.9279 3.3467
14 7 0.7277 7.9008 2.3155
15 6 -0.1803 8.8719 2.0943
16 8 -1.0050 8.7420 1.2145
17 6 -0.1708 10.1191 2.9401
18 16 -1.5003 11.2231 2.4019
19 6 -1.2635 12.5584 3.5267
20 1 -0.4708 12.5136 4.2589
21 6 -2.0948 13.6686 3.4712
22 7 -3.0605 13.7235 2.5785
23 14 -1.8432 15.0845 4.6633
24 1 -0.9024 16.0690 4.0711
25 1 -3.1466 15.7441 4.9305
26 1 -1.2807 14.5660 5.9361
27 6 0.8314 6.6385 1.5690
28 1 -0.3633 0.4302 0.9332
29 1 -0.3633 0.5932 -0.8392
30 1 -0.3633 -1.0233 -0.0941
31 1 1.8934 -0.5138 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.6010 1.9831 -0.8385
34 1 3.9353 2.4656 -0.0446
35 1 3.9989 0.8300 0.6545
36 1 5.0429 0.8783 -1.5942
37 1 3.5860 -0.1446 -1.5879
38 1 3.5224 1.4911 -2.2870
39 1 0.5695 2.0107 1.4683
40 1 2.1815 1.6633 2.1382
41 1 1.1987 4.0562 3.0357
42 1 1.3881 5.9906 4.2904
43 1 3.1275 6.3282 3.9989
44 1 1.4097 8.4015 4.2557
45 1 2.6615 8.4541 2.9782
46 1 -0.3221 9.8504 3.9856
47 1 0.7882 10.6254 2.8303
48 1 -3.6418 14.4991 2.5399
49 1 1.0418 6.8447 0.5195
50 1 -0.0983 6.0768 1.6594
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001294801441.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:48
Heat of formation + Delta-G solvation = -119.828811 kcal
Electronic energy + Delta-G solvation = -27142.984521 eV
Core-core repulsion = 23294.434393 eV
Total energy + Delta-G solvation = -3848.550128 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.46203 -40.65082 -38.71781 -37.58941 -35.33914 -34.59324 -32.66068 -32.35179
-30.94949 -30.72777 -28.88096 -27.65883 -26.00901 -24.50863 -23.46882 -22.35336
-21.70134 -20.75870 -20.55591 -19.63364 -18.30478 -18.15687 -17.65166 -16.90448
-16.86175 -16.55338 -16.26962 -15.80259 -15.59748 -15.54018 -15.20865 -14.93681
-14.55941 -14.49953 -14.37393 -14.16066 -13.94692 -13.70610 -13.46385 -13.32610
-13.16770 -12.95657 -12.89235 -12.78601 -12.72284 -12.66291 -12.61919 -12.24914
-11.99502 -11.88664 -11.73162 -11.44173 -11.37138 -11.26393 -11.14848 -11.07471
-10.66666 -10.29227 -10.15821 -9.78853 -8.69848 -8.35142 -6.14479 1.20320
1.42763 1.43149 1.50724 1.55231 1.65662 1.92684 2.26438 2.31688
2.99164 3.20633 3.40940 3.49217 3.75472 3.85780 3.88764 3.94858
4.01702 4.14501 4.21633 4.22914 4.30994 4.41820 4.42375 4.49104
4.58816 4.60646 4.64540 4.68288 4.72194 4.74523 4.86865 4.94547
4.97433 4.98638 5.06646 5.14867 5.16357 5.25734 5.29876 5.32096
5.41169 5.45908 5.49479 5.58569 5.61451 6.19182 6.30976 6.56469
7.04970 7.05925 7.29551 8.74229
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.027707 B = 0.001722 C = 0.001684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1010.335905 B =16254.680238 C =16626.339462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.116 4.116
3 C -0.072 4.072
4 C -0.123 4.123
5 C -0.151 4.151
6 C -0.133 4.133
7 C 0.508 3.492
8 O -0.575 6.575
9 N -0.711 5.711
10 C 0.145 3.855
11 H 0.098 0.902
12 C -0.118 4.118
13 C 0.088 3.912
14 N -0.615 5.615
15 C 0.544 3.456
16 O -0.570 6.570
17 C -0.117 4.117
18 S -0.156 6.156
19 C -0.545 4.545
20 H 0.085 0.915
21 C 0.012 3.988
22 N -0.912 5.912
23 Si 1.001 2.999
24 H -0.269 1.269
25 H -0.278 1.278
26 H -0.255 1.255
27 C 0.097 3.903
28 H 0.064 0.936
29 H 0.041 0.959
30 H 0.060 0.940
31 H 0.078 0.922
32 H 0.065 0.935
33 H 0.050 0.950
34 H 0.055 0.945
35 H 0.070 0.930
36 H 0.052 0.948
37 H 0.066 0.934
38 H 0.037 0.963
39 H 0.112 0.888
40 H 0.123 0.877
41 H 0.419 0.581
42 H 0.101 0.899
43 H 0.124 0.876
44 H 0.097 0.903
45 H 0.087 0.913
46 H 0.113 0.887
47 H 0.108 0.892
48 H 0.271 0.729
49 H 0.043 0.957
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.122 -29.925 5.387 34.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.153 4.153
3 C -0.091 4.091
4 C -0.160 4.160
5 C -0.208 4.208
6 C -0.173 4.173
7 C 0.297 3.703
8 O -0.454 6.454
9 N -0.364 5.364
10 C 0.038 3.962
11 H 0.116 0.884
12 C -0.156 4.156
13 C -0.034 4.034
14 N -0.351 5.351
15 C 0.332 3.668
16 O -0.449 6.449
17 C -0.268 4.268
18 S 0.071 5.929
19 C -0.693 4.693
20 H 0.104 0.896
21 C -0.192 4.192
22 N -0.549 5.549
23 Si 0.822 3.178
24 H -0.194 1.194
25 H -0.203 1.203
26 H -0.179 1.179
27 C -0.027 4.027
28 H 0.083 0.917
29 H 0.061 0.939
30 H 0.079 0.921
31 H 0.097 0.903
32 H 0.084 0.916
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.089 0.911
36 H 0.072 0.928
37 H 0.084 0.916
38 H 0.057 0.943
39 H 0.130 0.870
40 H 0.141 0.859
41 H 0.257 0.743
42 H 0.119 0.881
43 H 0.142 0.858
44 H 0.115 0.885
45 H 0.105 0.895
46 H 0.131 0.869
47 H 0.126 0.874
48 H 0.080 0.920
49 H 0.061 0.939
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 15.133 -29.681 3.322 33.481
hybrid contribution 0.293 1.292 1.096 1.719
sum 15.426 -28.390 4.418 32.611
Atomic orbital electron populations
1.21872 0.95864 1.01905 1.01892 1.21602 0.95759 0.94949 1.02992
1.20958 0.95918 0.96128 0.96100 1.21637 0.95263 1.01290 0.97825
1.21783 1.00944 1.01056 0.96993 1.21868 1.04971 0.89325 1.01091
1.21431 0.77216 0.90043 0.81634 1.90702 1.42918 1.78382 1.33421
1.45894 1.60989 1.07207 1.22274 1.21761 0.95842 0.80376 0.98205
0.88352 1.23087 1.05741 0.92456 0.94364 1.22727 0.90262 0.99013
0.91411 1.48367 1.32289 1.17806 1.36608 1.19915 0.79690 0.83724
0.83439 1.90695 1.39554 1.79827 1.34835 1.23291 1.04548 0.96045
1.02936 1.85667 1.40521 1.17459 1.49210 1.23195 1.20686 1.04659
1.20721 0.89650 1.26166 0.93842 1.01206 0.98016 1.70194 1.18323
1.30930 1.35413 0.84920 0.77918 0.76827 0.78105 1.19376 1.20340
1.17915 1.22342 0.99946 0.84857 0.95575 0.91730 0.93950 0.92125
0.90327 0.91598 0.93193 0.92669 0.91104 0.92846 0.91551 0.94332
0.87017 0.85888 0.74278 0.88079 0.85803 0.88494 0.89523 0.86897
0.87366 0.91996 0.93891 0.92105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.44 9.55 71.99 0.69 -0.75 16
2 C -0.12 -1.04 5.27 30.60 0.16 -0.87 16
3 C -0.07 -0.93 1.49 -10.79 -0.02 -0.95 16
4 C -0.12 -1.76 5.20 30.59 0.16 -1.61 16
5 C -0.15 -2.12 9.67 71.98 0.70 -1.43 16
6 C -0.13 -1.26 5.06 29.85 0.15 -1.11 16
7 C 0.51 8.35 7.56 87.66 0.66 9.02 16
8 O -0.58 -14.91 13.64 -3.03 -0.04 -14.95 16
9 N -0.71 -8.61 5.10 -436.92 -2.23 -10.84 16
10 C 0.14 2.32 3.32 46.18 0.15 2.47 16
11 H 0.10 1.85 7.55 -2.39 -0.02 1.83 16
12 C -0.12 -1.14 6.71 31.99 0.21 -0.92 16
13 C 0.09 1.47 6.69 86.85 0.58 2.05 16
14 N -0.62 -17.36 3.33 -811.79 -2.70 -20.06 16
15 C 0.54 21.64 7.87 87.66 0.69 22.33 16
16 O -0.57 -28.62 16.19 -3.05 -0.05 -28.67 16
17 C -0.12 -4.76 5.16 71.24 0.37 -4.39 16
18 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16
19 C -0.54 -31.14 9.50 67.96 0.65 -30.49 16
20 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16
21 C 0.01 0.70 5.49 84.86 0.47 1.17 16
22 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16
23 Si 1.00 43.41 29.55 68.60 2.03 45.43 16
24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
27 C 0.10 2.52 6.62 86.73 0.57 3.09 16
28 H 0.06 0.46 6.68 -2.39 -0.02 0.45 16
29 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16
32 H 0.07 0.63 6.33 -2.39 -0.02 0.62 16
33 H 0.05 0.94 7.93 -2.39 -0.02 0.93 16
34 H 0.05 1.10 5.95 -2.39 -0.01 1.09 16
35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
37 H 0.07 0.74 6.46 -2.39 -0.02 0.72 16
38 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16
39 H 0.11 0.73 6.38 -2.39 -0.02 0.72 16
40 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16
41 H 0.42 2.26 8.56 -92.71 -0.79 1.47 16
42 H 0.10 0.69 8.01 -2.39 -0.02 0.67 16
43 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16
44 H 0.10 1.45 7.48 -2.38 -0.02 1.44 16
45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16
46 H 0.11 4.03 7.85 -2.39 -0.02 4.01 16
47 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16
48 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16
49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
50 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16
Total: -1.00 -85.35 410.99 2.46 -82.89
By element:
Atomic # 1 Polarization: 14.56 SS G_CDS: 0.13 Total: 14.69 kcal
Atomic # 6 Polarization: -8.59 SS G_CDS: 6.20 Total: -2.39 kcal
Atomic # 7 Polarization: -82.38 SS G_CDS: -4.64 Total: -87.03 kcal
Atomic # 8 Polarization: -43.53 SS G_CDS: -0.09 Total: -43.62 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal
Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal
Total: -85.35 2.46 -82.89 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001294801441.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.938 kcal
(2) G-P(sol) polarization free energy of solvation -85.350 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds