Wall clock time and date at job start Sat Apr 11 2020 06:38:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47344 * 2 1
4 4 C 1.52996 * 109.47290 * 180.02562 * 3 2 1
5 5 C 1.53000 * 109.47290 * 179.97438 * 4 3 2
6 6 C 1.50699 * 109.47599 * 179.97438 * 5 4 3
7 7 O 1.21286 * 119.99670 * 359.97438 * 6 5 4
8 8 N 1.34774 * 120.00534 * 180.02562 * 6 5 4
9 9 C 1.46494 * 120.00272 * 179.97438 * 8 6 5
10 10 H 1.09004 * 110.91386 * 328.90214 * 9 8 6
11 11 C 1.55157 * 111.00680 * 204.99847 * 9 8 6
12 12 C 1.54321 * 103.10033 * 277.51720 * 11 9 8
13 13 H 1.09001 * 109.88480 * 97.13771 * 12 11 9
14 14 C 1.53002 * 109.88295 * 218.14054 * 12 11 9
15 15 N 1.47019 * 107.27531 * 337.71659 * 12 11 9
16 16 C 1.34777 * 125.65068 * 178.90607 * 15 12 11
17 17 O 1.21277 * 119.99926 * 359.97438 * 16 15 12
18 18 C 1.50704 * 119.99914 * 180.02562 * 16 15 12
19 19 S 1.81003 * 109.46742 * 180.02562 * 18 16 15
20 20 C 1.76200 * 99.99571 * 179.97438 * 19 18 16
21 21 H 1.07998 * 120.00533 * 359.97438 * 20 19 18
22 22 C 1.38802 * 120.00133 * 180.02562 * 20 19 18
23 23 N 1.31635 * 119.99725 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00494 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46975 * 59.99271 * 24 22 20
26 26 H 1.48494 * 109.47153 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.46483 * 299.99582 * 24 22 20
28 28 C 1.47431 * 108.70142 * 358.94050 * 15 12 11
29 29 H 1.08994 * 109.47013 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46514 * 300.00050 * 1 2 3
31 31 H 1.09001 * 109.46949 * 59.99901 * 1 2 3
32 32 H 1.09000 * 109.47168 * 240.00324 * 2 1 3
33 33 H 1.08995 * 109.47169 * 119.99703 * 2 1 3
34 34 H 1.09002 * 109.47226 * 59.99930 * 3 2 1
35 35 H 1.09007 * 109.46958 * 300.00326 * 3 2 1
36 36 H 1.09000 * 109.47592 * 60.00097 * 4 3 2
37 37 H 1.09001 * 109.47209 * 299.99425 * 4 3 2
38 38 H 1.09002 * 109.47226 * 59.99444 * 5 4 3
39 39 H 1.09007 * 109.46958 * 299.99839 * 5 4 3
40 40 H 0.97001 * 119.99350 * 359.97438 * 8 6 5
41 41 H 1.09002 * 110.72219 * 159.06416 * 11 9 8
42 42 H 1.09003 * 110.71618 * 35.97029 * 11 9 8
43 43 H 1.09003 * 109.46658 * 60.00367 * 14 12 11
44 44 H 1.09001 * 109.47565 * 179.97438 * 14 12 11
45 45 H 1.08993 * 109.47396 * 300.00635 * 14 12 11
46 46 H 1.09001 * 109.46884 * 299.99653 * 18 16 15
47 47 H 1.08994 * 109.47114 * 59.99465 * 18 16 15
48 48 H 0.96999 * 120.00248 * 180.02562 * 23 22 20
49 49 H 1.08999 * 110.36190 * 142.96411 * 28 15 12
50 50 H 1.08998 * 110.36491 * 265.18090 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0801 2.8849 -0.0013
6 6 5.5871 2.8850 -0.0013
7 8 6.1935 1.8346 -0.0004
8 7 6.2610 4.0522 -0.0013
9 6 7.7260 4.0522 -0.0007
10 1 8.1149 3.1804 0.5255
11 6 8.2819 5.3650 0.6113
12 6 8.2242 6.3543 -0.5717
13 1 7.3169 6.9551 -0.5087
14 6 9.4534 7.2651 -0.5489
15 7 8.2114 5.5574 -1.8071
16 6 8.1437 6.0507 -3.0595
17 8 8.0863 7.2491 -3.2369
18 6 8.1383 5.1131 -4.2394
19 16 8.0415 6.0721 -5.7714
20 6 8.0521 4.7642 -6.9521
21 1 8.1076 3.7379 -6.6206
22 6 7.9903 5.0530 -8.3083
23 7 7.9232 6.3040 -8.7124
24 14 8.0023 3.6666 -9.5601
25 1 6.8335 2.7803 -9.3283
26 1 7.9276 4.2356 -10.9297
27 1 9.2548 2.8817 -9.4172
28 6 8.2840 4.1291 -1.4490
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3632 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.6768 1.9564 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 3.9331 0.9288 -0.8908
37 1 3.9338 0.9286 0.8892
38 1 3.7171 3.3991 0.8887
39 1 3.7164 3.3985 -0.8914
40 1 5.7760 4.8922 -0.0017
41 1 9.3090 5.2281 0.9498
42 1 7.6495 5.7065 1.4308
43 1 10.3559 6.6593 -0.6304
44 1 9.4062 7.9604 -1.3870
45 1 9.4743 7.8239 0.3867
46 1 9.0544 4.5224 -4.2382
47 1 7.2772 4.4484 -4.1712
48 1 7.8796 6.5059 -9.6602
49 1 7.6670 3.5368 -2.1247
50 1 9.3171 3.7828 -1.4778
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001718674470.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:46
Heat of formation + Delta-G solvation = -101.373329 kcal
Electronic energy + Delta-G solvation = -27503.385848 eV
Core-core repulsion = 23655.636010 eV
Total energy + Delta-G solvation = -3847.749838 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.61561 -39.43091 -37.42513 -36.22876 -34.23119 -32.55946 -32.42716 -32.19388
-30.24480 -28.72252 -27.43204 -26.01718 -25.48123 -23.42818 -22.43367 -21.37402
-21.02198 -20.50723 -18.97012 -17.67348 -17.28697 -17.08834 -16.43265 -16.31729
-15.44611 -15.29820 -14.83454 -14.78517 -14.41450 -14.35914 -14.04460 -13.81696
-13.60987 -13.52341 -13.43612 -13.03576 -12.83206 -12.58343 -12.51577 -12.28572
-12.13532 -12.00043 -11.89231 -11.64719 -11.42425 -11.30848 -11.23475 -11.12498
-11.03811 -11.03439 -10.89920 -10.80122 -10.76261 -10.03323 -9.82641 -9.53159
-9.28915 -9.05662 -8.50232 -8.24594 -6.50580 -6.21507 -3.92264 2.41296
2.86117 2.88900 3.05696 3.24131 3.26162 3.29547 3.60142 4.13410
4.21179 4.27730 4.40233 4.49203 4.60607 4.66548 4.84955 4.87869
4.93314 5.00641 5.04869 5.13505 5.17879 5.21550 5.25611 5.28741
5.38988 5.44361 5.48896 5.49557 5.52249 5.58476 5.59651 5.64662
5.67101 5.70317 5.77441 5.88785 5.91879 5.98909 6.02267 6.10615
6.14172 6.22028 6.25112 6.50845 7.22410 7.59632 7.65066 7.98691
8.35424 8.55307 9.23792 10.85851
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.007061 B = 0.002926 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3964.465186 B = 9566.320111 C =12754.350855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.126 4.126
3 C -0.121 4.121
4 C -0.104 4.104
5 C -0.142 4.142
6 C 0.515 3.485
7 O -0.539 6.539
8 N -0.721 5.721
9 C 0.131 3.869
10 H 0.112 0.888
11 C -0.135 4.135
12 C 0.134 3.866
13 H 0.073 0.927
14 C -0.163 4.163
15 N -0.621 5.621
16 C 0.551 3.449
17 O -0.513 6.513
18 C -0.147 4.147
19 S -0.060 6.060
20 C -0.535 4.535
21 H 0.072 0.928
22 C 0.074 3.926
23 N -0.868 5.868
24 Si 0.918 3.082
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.274 1.274
28 C 0.090 3.910
29 H 0.052 0.948
30 H 0.052 0.948
31 H 0.054 0.946
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.063 0.937
36 H 0.071 0.929
37 H 0.068 0.932
38 H 0.092 0.908
39 H 0.096 0.904
40 H 0.402 0.598
41 H 0.093 0.907
42 H 0.087 0.913
43 H 0.056 0.944
44 H 0.074 0.926
45 H 0.061 0.939
46 H 0.088 0.912
47 H 0.086 0.914
48 H 0.269 0.731
49 H 0.081 0.919
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.586 -7.171 24.322 26.467
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.163 4.163
3 C -0.159 4.159
4 C -0.142 4.142
5 C -0.182 4.182
6 C 0.302 3.698
7 O -0.416 6.416
8 N -0.373 5.373
9 C 0.025 3.975
10 H 0.130 0.870
11 C -0.173 4.173
12 C 0.031 3.969
13 H 0.091 0.909
14 C -0.221 4.221
15 N -0.359 5.359
16 C 0.339 3.661
17 O -0.387 6.387
18 C -0.298 4.298
19 S 0.167 5.833
20 C -0.683 4.683
21 H 0.090 0.910
22 C -0.135 4.135
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.199 1.199
26 H -0.208 1.208
27 H -0.199 1.199
28 C -0.035 4.035
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.073 0.927
32 H 0.081 0.919
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.082 0.918
36 H 0.089 0.911
37 H 0.087 0.913
38 H 0.111 0.889
39 H 0.114 0.886
40 H 0.237 0.763
41 H 0.112 0.888
42 H 0.105 0.895
43 H 0.075 0.925
44 H 0.093 0.907
45 H 0.080 0.920
46 H 0.106 0.894
47 H 0.105 0.895
48 H 0.079 0.921
49 H 0.100 0.900
50 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -7.246 -5.984 23.805 25.593
hybrid contribution -0.094 -1.831 -0.681 1.956
sum -7.340 -7.815 23.124 25.489
Atomic orbital electron populations
1.21783 0.95948 1.01567 1.01776 1.21523 0.95737 0.96854 1.02214
1.21644 0.95059 0.97050 1.02120 1.21356 0.94766 0.94480 1.03645
1.21719 0.91499 1.00424 1.04566 1.20810 0.90452 0.83408 0.75105
1.90714 1.70528 1.31220 1.49101 1.45954 1.06586 1.09020 1.75726
1.22145 0.80363 0.99361 0.95616 0.86975 1.23081 1.02941 0.93930
0.97349 1.21485 0.99298 0.92648 0.83514 0.90870 1.22138 0.97057
1.00129 1.02799 1.48597 1.75490 1.06834 1.04999 1.19985 0.75073
0.89081 0.81925 1.90692 1.48054 1.15693 1.84310 1.23518 1.04709
1.02432 0.99109 1.85347 1.96401 1.10201 0.91339 1.22819 1.58841
0.93776 0.92906 0.91021 1.24987 0.94509 0.96389 0.97641 1.70008
1.46674 1.17479 1.16172 0.86228 0.78854 0.81054 0.79413 1.19913
1.20793 1.19912 1.22809 1.01488 0.83032 0.96131 0.92848 0.92861
0.92681 0.91857 0.92051 0.92032 0.91781 0.91053 0.91295 0.88945
0.88612 0.76316 0.88824 0.89461 0.92476 0.90730 0.92002 0.89402
0.89528 0.92134 0.90025 0.90395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16
2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16
3 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16
4 C -0.10 -0.85 4.50 -26.73 -0.12 -0.97 16
5 C -0.14 -1.04 5.70 -27.88 -0.16 -1.20 16
6 C 0.52 5.19 7.83 -10.99 -0.09 5.10 16
7 O -0.54 -7.42 15.62 5.55 0.09 -7.34 16
8 N -0.72 -6.11 5.19 -51.48 -0.27 -6.37 16
9 C 0.13 1.15 3.46 -65.52 -0.23 0.92 16
10 H 0.11 1.01 7.54 -51.93 -0.39 0.61 16
11 C -0.13 -0.96 6.06 -24.90 -0.15 -1.11 16
12 C 0.13 1.44 3.44 -66.95 -0.23 1.21 16
13 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
14 C -0.16 -1.82 9.10 37.16 0.34 -1.49 16
15 N -0.62 -8.57 3.07 -162.71 -0.50 -9.07 16
16 C 0.55 10.45 7.66 -10.98 -0.08 10.36 16
17 O -0.51 -11.52 14.92 5.56 0.08 -11.44 16
18 C -0.15 -3.07 5.16 36.01 0.19 -2.88 16
19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16
20 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16
21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16
22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16
23 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16
24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16
25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
28 C 0.09 1.03 6.40 -2.26 -0.01 1.01 16
29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16
37 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16
38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16
39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.40 2.75 8.67 -40.82 -0.35 2.40 16
41 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16
42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
44 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16
45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16
47 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16
48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
49 H 0.08 1.06 7.47 -51.93 -0.39 0.67 16
50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
LS Contribution 419.59 15.07 6.32 6.32
Total: -1.00 -35.63 419.59 -10.09 -45.72
By element:
Atomic # 1 Polarization: 8.71 SS G_CDS: -9.03 Total: -0.33 kcal
Atomic # 6 Polarization: -4.41 SS G_CDS: -0.28 Total: -4.69 kcal
Atomic # 7 Polarization: -40.97 SS G_CDS: -0.03 Total: -41.00 kcal
Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal
Total LS contribution 6.32 Total: 6.32 kcal
Total: -35.63 -10.09 -45.72 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001718674470.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.657 kcal
(2) G-P(sol) polarization free energy of solvation -35.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.373 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds