Wall clock time and date at job start Sat Apr 11 2020 06:38:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47344 * 2 1
4 4 C 1.52996 * 109.47290 * 180.02562 * 3 2 1
5 5 C 1.53000 * 109.47290 * 179.97438 * 4 3 2
6 6 C 1.50699 * 109.47599 * 179.97438 * 5 4 3
7 7 O 1.21286 * 119.99670 * 359.97438 * 6 5 4
8 8 N 1.34774 * 120.00534 * 180.02562 * 6 5 4
9 9 C 1.46494 * 120.00272 * 179.97438 * 8 6 5
10 10 H 1.09004 * 110.91386 * 328.90214 * 9 8 6
11 11 C 1.55157 * 111.00680 * 204.99847 * 9 8 6
12 12 C 1.54321 * 103.10033 * 277.51720 * 11 9 8
13 13 H 1.09001 * 109.88480 * 97.13771 * 12 11 9
14 14 C 1.53002 * 109.88295 * 218.14054 * 12 11 9
15 15 N 1.47019 * 107.27531 * 337.71659 * 12 11 9
16 16 C 1.34777 * 125.65068 * 178.90607 * 15 12 11
17 17 O 1.21277 * 119.99926 * 359.97438 * 16 15 12
18 18 C 1.50704 * 119.99914 * 180.02562 * 16 15 12
19 19 S 1.81003 * 109.46742 * 180.02562 * 18 16 15
20 20 C 1.76200 * 99.99571 * 179.97438 * 19 18 16
21 21 H 1.07998 * 120.00533 * 359.97438 * 20 19 18
22 22 C 1.38802 * 120.00133 * 180.02562 * 20 19 18
23 23 N 1.31635 * 119.99725 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00494 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46975 * 59.99271 * 24 22 20
26 26 H 1.48494 * 109.47153 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.46483 * 299.99582 * 24 22 20
28 28 C 1.47431 * 108.70142 * 358.94050 * 15 12 11
29 29 H 1.08994 * 109.47013 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46514 * 300.00050 * 1 2 3
31 31 H 1.09001 * 109.46949 * 59.99901 * 1 2 3
32 32 H 1.09000 * 109.47168 * 240.00324 * 2 1 3
33 33 H 1.08995 * 109.47169 * 119.99703 * 2 1 3
34 34 H 1.09002 * 109.47226 * 59.99930 * 3 2 1
35 35 H 1.09007 * 109.46958 * 300.00326 * 3 2 1
36 36 H 1.09000 * 109.47592 * 60.00097 * 4 3 2
37 37 H 1.09001 * 109.47209 * 299.99425 * 4 3 2
38 38 H 1.09002 * 109.47226 * 59.99444 * 5 4 3
39 39 H 1.09007 * 109.46958 * 299.99839 * 5 4 3
40 40 H 0.97001 * 119.99350 * 359.97438 * 8 6 5
41 41 H 1.09002 * 110.72219 * 159.06416 * 11 9 8
42 42 H 1.09003 * 110.71618 * 35.97029 * 11 9 8
43 43 H 1.09003 * 109.46658 * 60.00367 * 14 12 11
44 44 H 1.09001 * 109.47565 * 179.97438 * 14 12 11
45 45 H 1.08993 * 109.47396 * 300.00635 * 14 12 11
46 46 H 1.09001 * 109.46884 * 299.99653 * 18 16 15
47 47 H 1.08994 * 109.47114 * 59.99465 * 18 16 15
48 48 H 0.96999 * 120.00248 * 180.02562 * 23 22 20
49 49 H 1.08999 * 110.36190 * 142.96411 * 28 15 12
50 50 H 1.08998 * 110.36491 * 265.18090 * 28 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 6 4.0801 2.8849 -0.0013
6 6 5.5871 2.8850 -0.0013
7 8 6.1935 1.8346 -0.0004
8 7 6.2610 4.0522 -0.0013
9 6 7.7260 4.0522 -0.0007
10 1 8.1149 3.1804 0.5255
11 6 8.2819 5.3650 0.6113
12 6 8.2242 6.3543 -0.5717
13 1 7.3169 6.9551 -0.5087
14 6 9.4534 7.2651 -0.5489
15 7 8.2114 5.5574 -1.8071
16 6 8.1437 6.0507 -3.0595
17 8 8.0863 7.2491 -3.2369
18 6 8.1383 5.1131 -4.2394
19 16 8.0415 6.0721 -5.7714
20 6 8.0521 4.7642 -6.9521
21 1 8.1076 3.7379 -6.6206
22 6 7.9903 5.0530 -8.3083
23 7 7.9232 6.3040 -8.7124
24 14 8.0023 3.6666 -9.5601
25 1 6.8335 2.7803 -9.3283
26 1 7.9276 4.2356 -10.9297
27 1 9.2548 2.8817 -9.4172
28 6 8.2840 4.1291 -1.4490
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3632 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.6768 1.9564 0.8900
35 1 1.6767 1.9563 -0.8900
36 1 3.9331 0.9288 -0.8908
37 1 3.9338 0.9286 0.8892
38 1 3.7171 3.3991 0.8887
39 1 3.7164 3.3985 -0.8914
40 1 5.7760 4.8922 -0.0017
41 1 9.3090 5.2281 0.9498
42 1 7.6495 5.7065 1.4308
43 1 10.3559 6.6593 -0.6304
44 1 9.4062 7.9604 -1.3870
45 1 9.4743 7.8239 0.3867
46 1 9.0544 4.5224 -4.2382
47 1 7.2772 4.4484 -4.1712
48 1 7.8796 6.5059 -9.6602
49 1 7.6670 3.5368 -2.1247
50 1 9.3171 3.7828 -1.4778
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001718674470.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:45
Heat of formation + Delta-G solvation = -124.414043 kcal
Electronic energy + Delta-G solvation = -27504.384968 eV
Core-core repulsion = 23655.636010 eV
Total energy + Delta-G solvation = -3848.748958 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.58897 -40.47975 -38.62292 -36.84098 -35.13999 -34.62073 -33.35855 -33.16560
-31.09611 -30.23889 -28.02757 -27.69637 -26.90553 -24.22086 -23.38164 -22.01170
-21.73014 -21.26420 -20.37434 -19.49237 -18.26187 -18.03409 -17.55930 -17.02098
-16.91279 -16.65760 -16.33303 -16.00339 -15.69203 -15.25340 -15.11862 -14.90573
-14.58301 -14.34076 -14.21564 -14.06568 -14.05200 -13.82696 -13.61177 -13.24702
-13.20330 -13.04246 -12.90149 -12.80774 -12.64409 -12.58466 -12.42126 -12.26689
-11.89751 -11.82020 -11.78222 -11.76531 -11.66932 -11.37138 -11.16482 -10.93175
-10.84106 -10.34643 -10.25956 -9.64820 -8.71273 -8.38017 -6.16717 1.20645
1.40962 1.41466 1.52191 1.54418 1.64134 2.04996 2.18741 2.24152
2.95733 3.17792 3.41592 3.45192 3.77960 3.83775 3.87895 3.95087
4.03453 4.14846 4.16616 4.29244 4.32597 4.33755 4.39509 4.40975
4.46574 4.58918 4.66083 4.71592 4.74101 4.79029 4.87338 4.89244
4.93228 4.96213 5.05792 5.10664 5.12602 5.24335 5.29539 5.36390
5.37423 5.45644 5.48842 5.49781 5.54864 6.15823 6.34222 6.53074
7.02906 7.11315 7.25256 8.70961
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.007061 B = 0.002926 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3964.465186 B = 9566.320111 C =12754.350855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.129 4.129
3 C -0.116 4.116
4 C -0.102 4.102
5 C -0.138 4.138
6 C 0.512 3.488
7 O -0.581 6.581
8 N -0.713 5.713
9 C 0.137 3.863
10 H 0.119 0.881
11 C -0.113 4.113
12 C 0.126 3.874
13 H 0.073 0.927
14 C -0.159 4.159
15 N -0.608 5.608
16 C 0.550 3.450
17 O -0.557 6.557
18 C -0.122 4.122
19 S -0.140 6.140
20 C -0.550 4.550
21 H 0.078 0.922
22 C 0.016 3.984
23 N -0.909 5.909
24 Si 0.997 3.003
25 H -0.263 1.263
26 H -0.275 1.275
27 H -0.263 1.263
28 C 0.082 3.918
29 H 0.055 0.945
30 H 0.060 0.940
31 H 0.053 0.947
32 H 0.052 0.948
33 H 0.061 0.939
34 H 0.076 0.924
35 H 0.063 0.937
36 H 0.046 0.954
37 H 0.060 0.940
38 H 0.122 0.878
39 H 0.103 0.897
40 H 0.413 0.587
41 H 0.113 0.887
42 H 0.117 0.883
43 H 0.059 0.941
44 H 0.032 0.968
45 H 0.093 0.907
46 H 0.098 0.902
47 H 0.096 0.904
48 H 0.272 0.728
49 H 0.064 0.936
50 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.014 -8.385 26.591 29.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.166 4.166
3 C -0.153 4.153
4 C -0.140 4.140
5 C -0.177 4.177
6 C 0.300 3.700
7 O -0.460 6.460
8 N -0.365 5.365
9 C 0.031 3.969
10 H 0.136 0.864
11 C -0.151 4.151
12 C 0.024 3.976
13 H 0.092 0.908
14 C -0.217 4.217
15 N -0.343 5.343
16 C 0.338 3.662
17 O -0.435 6.435
18 C -0.274 4.274
19 S 0.087 5.913
20 C -0.698 4.698
21 H 0.096 0.904
22 C -0.189 4.189
23 N -0.545 5.545
24 Si 0.818 3.182
25 H -0.187 1.187
26 H -0.200 1.200
27 H -0.188 1.188
28 C -0.042 4.042
29 H 0.074 0.926
30 H 0.079 0.921
31 H 0.072 0.928
32 H 0.071 0.929
33 H 0.080 0.920
34 H 0.095 0.905
35 H 0.082 0.918
36 H 0.065 0.935
37 H 0.079 0.921
38 H 0.140 0.860
39 H 0.121 0.879
40 H 0.249 0.751
41 H 0.132 0.868
42 H 0.136 0.864
43 H 0.078 0.922
44 H 0.051 0.949
45 H 0.111 0.889
46 H 0.116 0.884
47 H 0.114 0.886
48 H 0.081 0.919
49 H 0.083 0.917
50 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -7.681 -7.199 26.132 28.173
hybrid contribution 0.059 -1.466 -1.260 1.934
sum -7.622 -8.665 24.872 27.419
Atomic orbital electron populations
1.21775 0.95271 1.01854 1.02066 1.21545 0.96346 0.96979 1.01757
1.21605 0.93859 0.97046 1.02801 1.21295 0.95750 0.94871 1.02054
1.21752 0.89559 1.00115 1.06295 1.21286 0.91513 0.83058 0.74119
1.90699 1.71492 1.32709 1.51140 1.45944 1.06618 1.09160 1.74782
1.22116 0.80490 1.00647 0.93631 0.86370 1.23057 1.04771 0.91216
0.96062 1.21814 0.99240 0.93397 0.83174 0.90842 1.22099 0.97275
0.99673 1.02690 1.48481 1.72955 1.08595 1.04308 1.19569 0.75537
0.87991 0.83120 1.90678 1.50563 1.17070 1.85169 1.23318 1.05563
1.01855 0.96631 1.85452 1.96704 1.13410 0.95742 1.23135 1.59108
0.93913 0.93609 0.90431 1.26105 0.93606 0.99294 0.99894 1.70164
1.47563 1.19977 1.16807 0.85030 0.79469 0.77379 0.76296 1.18738
1.20014 1.18760 1.23062 1.02367 0.81046 0.97735 0.92630 0.92094
0.92830 0.92933 0.91977 0.90524 0.91794 0.93508 0.92085 0.85965
0.87885 0.75110 0.86832 0.86449 0.92216 0.94855 0.88853 0.88366
0.88602 0.91856 0.91744 0.88998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16
2 C -0.13 -1.68 5.93 30.60 0.18 -1.50 16
3 C -0.12 -1.41 5.21 30.59 0.16 -1.25 16
4 C -0.10 -1.58 4.50 30.59 0.14 -1.44 16
5 C -0.14 -1.75 5.70 29.85 0.17 -1.58 16
6 C 0.51 9.46 7.83 87.66 0.69 10.15 16
7 O -0.58 -15.57 15.62 -3.05 -0.05 -15.62 16
8 N -0.71 -10.27 5.19 -435.17 -2.26 -12.53 16
9 C 0.14 2.01 3.46 46.55 0.16 2.18 16
10 H 0.12 1.76 7.54 -2.39 -0.02 1.74 16
11 C -0.11 -1.14 6.06 31.78 0.19 -0.95 16
12 C 0.13 2.42 3.44 45.34 0.16 2.58 16
13 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
14 C -0.16 -3.30 9.10 71.98 0.66 -2.64 16
15 N -0.61 -16.14 3.07 -787.09 -2.42 -18.56 16
16 C 0.55 21.15 7.66 87.66 0.67 21.82 16
17 O -0.56 -25.89 14.92 -3.02 -0.05 -25.94 16
18 C -0.12 -5.20 5.16 71.24 0.37 -4.84 16
19 S -0.14 -7.97 20.57 -56.49 -1.16 -9.13 16
20 C -0.55 -32.23 9.50 67.95 0.65 -31.58 16
21 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16
22 C 0.02 0.93 5.49 84.86 0.47 1.40 16
23 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16
24 Si 1.00 44.37 29.55 68.60 2.03 46.40 16
25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16
26 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16
27 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16
28 C 0.08 1.73 6.40 87.02 0.56 2.29 16
29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16
30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
36 H 0.05 0.94 8.10 -2.39 -0.02 0.93 16
37 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16
38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16
40 H 0.41 4.38 8.67 -92.71 -0.80 3.58 16
41 H 0.11 0.82 7.85 -2.39 -0.02 0.80 16
42 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16
43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
44 H 0.03 0.98 6.91 -2.39 -0.02 0.96 16
45 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
46 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16
47 H 0.10 3.85 7.85 -2.40 -0.02 3.83 16
48 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
49 H 0.06 1.62 7.47 -2.39 -0.02 1.60 16
50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -81.70 419.59 2.41 -79.29
By element:
Atomic # 1 Polarization: 18.36 SS G_CDS: 0.10 Total: 18.46 kcal
Atomic # 6 Polarization: -12.29 SS G_CDS: 5.92 Total: -6.36 kcal
Atomic # 7 Polarization: -82.71 SS G_CDS: -4.39 Total: -87.10 kcal
Atomic # 8 Polarization: -41.47 SS G_CDS: -0.09 Total: -41.56 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal
Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal
Total: -81.70 2.41 -79.29 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001718674470.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.120 kcal
(2) G-P(sol) polarization free energy of solvation -81.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds