Wall clock time and date at job start Sat Apr 11 2020 06:38:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47239 * 2 1
4 4 C 1.52998 * 109.46882 * 60.00265 * 3 2 1
5 5 C 1.52998 * 109.47325 * 300.00221 * 3 2 1
6 6 C 1.50701 * 109.47261 * 180.02562 * 3 2 1
7 7 O 1.21286 * 120.00018 * 351.04794 * 6 3 2
8 8 N 1.34779 * 120.00130 * 171.04485 * 6 3 2
9 9 C 1.43525 * 119.01421 * 184.27435 * 8 6 3
10 10 C 1.53798 * 107.93144 * 273.72421 * 9 8 6
11 11 C 1.47148 * 111.77243 * 281.56071 * 10 9 8
12 12 N 1.48206 * 110.34582 * 58.33358 * 11 10 9
13 13 C 1.34778 * 119.97015 * 102.45831 * 12 11 10
14 14 O 1.21282 * 120.00160 * 354.56205 * 13 12 11
15 15 C 1.50704 * 119.99901 * 174.55474 * 13 12 11
16 16 S 1.80999 * 109.46946 * 174.29990 * 15 13 12
17 17 C 1.76205 * 100.00008 * 180.02562 * 16 15 13
18 18 H 1.07991 * 119.99593 * 359.97438 * 17 16 15
19 19 C 1.38792 * 119.99931 * 180.02562 * 17 16 15
20 20 N 1.31631 * 120.00144 * 359.97438 * 19 17 16
21 21 Si 1.86806 * 120.00012 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.46868 * 90.00020 * 21 19 17
23 23 H 1.48495 * 109.47401 * 209.99853 * 21 19 17
24 24 H 1.48499 * 109.46973 * 330.00279 * 21 19 17
25 25 C 1.43621 * 120.05850 * 282.48181 * 12 11 10
26 26 C 1.48861 * 118.93949 * 4.26737 * 8 6 3
27 27 H 1.08998 * 109.46910 * 299.99864 * 1 2 3
28 28 H 1.08998 * 109.47153 * 59.99852 * 1 2 3
29 29 H 1.08995 * 109.47076 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.46682 * 240.00348 * 2 1 3
31 31 H 1.08996 * 109.47578 * 120.00777 * 2 1 3
32 32 H 1.09001 * 109.47138 * 158.84688 * 4 3 2
33 33 H 1.08995 * 109.47169 * 278.84555 * 4 3 2
34 34 H 1.08997 * 109.47545 * 38.85072 * 4 3 2
35 35 H 1.08998 * 109.47057 * 300.00007 * 5 3 2
36 36 H 1.09007 * 109.47253 * 59.99742 * 5 3 2
37 37 H 1.09004 * 109.47089 * 179.97438 * 5 3 2
38 38 H 1.09002 * 109.84129 * 154.07986 * 9 8 6
39 39 H 1.09000 * 109.71723 * 33.29222 * 9 8 6
40 40 H 1.08999 * 109.01006 * 160.99120 * 10 9 8
41 41 H 1.09001 * 109.01061 * 42.12668 * 10 9 8
42 42 H 1.09006 * 109.31707 * 178.60196 * 11 10 9
43 43 H 1.09001 * 109.32517 * 298.06393 * 11 10 9
44 44 H 1.08998 * 109.47065 * 294.29978 * 15 13 12
45 45 H 1.08998 * 109.46991 * 54.30414 * 15 13 12
46 46 H 0.97005 * 119.99724 * 179.97438 * 20 19 17
47 47 H 1.09001 * 108.87383 * 211.44648 * 25 12 11
48 48 H 1.08995 * 108.87259 * 329.98738 * 25 12 11
49 49 H 1.09002 * 109.48057 * 20.63622 * 26 8 6
50 50 H 1.08994 * 109.48773 * 260.61191 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.5301 2.1636 1.2493
5 6 1.5300 2.1638 -1.2492
6 6 3.5470 1.4425 -0.0006
7 8 4.1535 0.4049 0.1624
8 7 4.2209 2.5955 -0.1824
9 6 5.6528 2.5582 -0.2719
10 6 6.2184 2.6243 1.1568
11 6 6.1946 3.9954 1.6904
12 7 4.8102 4.5244 1.6904
13 6 4.1069 4.5699 2.8392
14 8 4.5682 4.0884 3.8522
15 6 2.7471 5.2192 2.8650
16 16 1.9923 4.9741 4.4917
17 6 0.4596 5.8081 4.2467
18 1 0.2427 6.2707 3.2952
19 6 -0.4684 5.8715 5.2767
20 7 -0.2038 5.3081 6.4366
21 14 -2.0931 6.7562 5.0172
22 1 -3.1021 5.7969 4.5006
23 1 -2.5617 7.3198 6.3086
24 1 -1.9069 7.8552 4.0359
25 6 4.2173 4.9882 0.4673
26 6 3.4559 3.8685 -0.2844
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8901
31 1 1.8934 -0.5139 0.8899
32 1 2.1636 3.0266 1.4547
33 1 0.5054 2.4964 1.0839
34 1 1.5580 1.4819 2.0993
35 1 1.8933 1.6500 -2.1392
36 1 0.4399 2.1638 -1.2492
37 1 1.8930 3.1916 -1.2489
38 1 6.0098 3.4110 -0.8494
39 1 5.9674 1.6307 -0.7502
40 1 7.2472 2.2644 1.1484
41 1 5.6228 1.9810 1.8045
42 1 6.5797 3.9922 2.7102
43 1 6.8249 4.6342 1.0716
44 1 2.8504 6.2865 2.6695
45 1 2.1150 4.7691 2.0996
46 1 -0.8523 5.3527 7.1566
47 1 3.5213 5.7951 0.6966
48 1 5.0034 5.3748 -0.1812
49 1 2.4700 3.7368 0.1614
50 1 3.3467 4.1440 -1.3332
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001737038528.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:40
Heat of formation + Delta-G solvation = -76.820054 kcal
Electronic energy + Delta-G solvation = -30417.364616 eV
Core-core repulsion = 26570.679488 eV
Total energy + Delta-G solvation = -3846.685128 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.17969 -40.75116 -38.29453 -37.55959 -35.58879 -34.56629 -34.54524 -31.25695
-30.83961 -29.49550 -28.35661 -27.68256 -27.09951 -25.93223 -24.11687 -23.53331
-21.26800 -20.50379 -19.83997 -19.39324 -18.16504 -17.87732 -17.49898 -16.89821
-16.84352 -16.61104 -16.41464 -15.95364 -15.73005 -15.62547 -15.01124 -14.80544
-14.73290 -14.54246 -14.34760 -14.09487 -13.96263 -13.60341 -13.49253 -13.31908
-13.11802 -13.05548 -12.95115 -12.85784 -12.67914 -12.60602 -12.42716 -12.23643
-12.14517 -11.97455 -11.95296 -11.68093 -11.60783 -11.36947 -11.10712 -10.87116
-10.60733 -10.20575 -9.84022 -9.51782 -8.63508 -8.30881 -6.08689 1.27164
1.44630 1.47057 1.55932 1.58076 1.62578 1.96839 2.20890 2.30162
3.04094 3.28881 3.36041 3.65301 3.69550 3.81364 3.86331 3.91609
3.96644 4.06798 4.16935 4.26348 4.29766 4.39025 4.41110 4.48662
4.50793 4.55418 4.60971 4.62084 4.70220 4.71077 4.80994 4.81774
4.87446 4.91988 5.01753 5.06029 5.08495 5.14008 5.21624 5.21951
5.37644 5.45788 5.47508 5.58576 5.72606 6.23475 6.26184 6.37482
7.10901 7.16031 7.17929 8.78209
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.010690 B = 0.004353 C = 0.003484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2618.734547 B = 6431.274983 C = 8033.911558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.096 4.096
3 C -0.078 4.078
4 C -0.145 4.145
5 C -0.158 4.158
6 C 0.513 3.487
7 O -0.585 6.585
8 N -0.598 5.598
9 C 0.123 3.877
10 C -0.150 4.150
11 C 0.120 3.880
12 N -0.597 5.597
13 C 0.529 3.471
14 O -0.569 6.569
15 C -0.125 4.125
16 S -0.156 6.156
17 C -0.536 4.536
18 H 0.087 0.913
19 C 0.014 3.986
20 N -0.914 5.914
21 Si 0.995 3.005
22 H -0.268 1.268
23 H -0.283 1.283
24 H -0.254 1.254
25 C 0.081 3.919
26 C 0.059 3.941
27 H 0.050 0.950
28 H 0.078 0.922
29 H 0.060 0.940
30 H 0.063 0.937
31 H 0.036 0.964
32 H 0.061 0.939
33 H 0.087 0.913
34 H 0.032 0.968
35 H 0.064 0.936
36 H 0.083 0.917
37 H 0.095 0.905
38 H 0.122 0.878
39 H 0.070 0.930
40 H 0.097 0.903
41 H 0.018 0.982
42 H 0.060 0.940
43 H 0.119 0.881
44 H 0.111 0.889
45 H 0.110 0.890
46 H 0.269 0.731
47 H 0.103 0.897
48 H 0.125 0.875
49 H 0.097 0.903
50 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.745 -0.045 -24.028 24.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.134 4.134
3 C -0.081 4.081
4 C -0.202 4.202
5 C -0.215 4.215
6 C 0.302 3.698
7 O -0.466 6.466
8 N -0.329 5.329
9 C 0.000 4.000
10 C -0.189 4.189
11 C -0.001 4.001
12 N -0.330 5.330
13 C 0.316 3.684
14 O -0.448 6.448
15 C -0.276 4.276
16 S 0.072 5.928
17 C -0.684 4.684
18 H 0.105 0.895
19 C -0.191 4.191
20 N -0.551 5.551
21 Si 0.817 3.183
22 H -0.193 1.193
23 H -0.209 1.209
24 H -0.177 1.177
25 C -0.043 4.043
26 C -0.062 4.062
27 H 0.069 0.931
28 H 0.097 0.903
29 H 0.079 0.921
30 H 0.082 0.918
31 H 0.055 0.945
32 H 0.080 0.920
33 H 0.105 0.895
34 H 0.051 0.949
35 H 0.084 0.916
36 H 0.102 0.898
37 H 0.114 0.886
38 H 0.140 0.860
39 H 0.088 0.912
40 H 0.116 0.884
41 H 0.037 0.963
42 H 0.078 0.922
43 H 0.137 0.863
44 H 0.130 0.870
45 H 0.128 0.872
46 H 0.078 0.922
47 H 0.121 0.879
48 H 0.143 0.857
49 H 0.115 0.885
50 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 7.709 -1.369 -22.340 23.672
hybrid contribution -1.212 0.418 -0.003 1.283
sum 6.496 -0.951 -22.343 23.288
Atomic orbital electron populations
1.21856 0.93720 1.02356 1.02761 1.21314 0.96984 0.93710 1.01364
1.20790 0.90143 0.98447 0.98701 1.22117 1.02781 0.99823 0.95524
1.22456 1.03135 1.01855 0.94022 1.21123 0.90882 0.83193 0.74584
1.90638 1.71335 1.33742 1.50842 1.47736 1.07131 1.06882 1.71156
1.21156 0.79293 1.04087 0.95436 1.21446 1.02453 0.97207 0.97841
1.20793 0.81730 0.95003 1.02561 1.47559 1.14974 1.63226 1.07222
1.20314 0.86296 0.78339 0.83403 1.90687 1.71059 1.47487 1.35543
1.23466 0.96129 1.04478 1.03529 1.85785 1.19001 1.74195 1.13858
1.23161 1.02378 1.40364 1.02523 0.89459 1.26091 1.02860 0.96160
0.93943 1.70202 1.37118 1.43667 1.04134 0.85007 0.76782 0.78574
0.77981 1.19306 1.20899 1.17722 1.22084 1.00664 0.96170 0.85347
1.24002 0.96376 0.82456 1.03407 0.93064 0.90327 0.92131 0.91794
0.94460 0.92020 0.89456 0.94872 0.91647 0.89825 0.88629 0.86028
0.91162 0.88435 0.96294 0.92179 0.86258 0.87048 0.87241 0.92222
0.87851 0.85745 0.88523 0.85294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.01 9.28 71.98 0.67 -2.35 16
2 C -0.10 -2.39 4.23 30.59 0.13 -2.26 16
3 C -0.08 -1.83 0.52 -52.93 -0.03 -1.85 16
4 C -0.15 -4.08 7.05 71.98 0.51 -3.58 16
5 C -0.16 -2.33 7.60 71.98 0.55 -1.78 16
6 C 0.51 14.17 6.13 87.66 0.54 14.71 16
7 O -0.59 -21.13 15.49 -3.05 -0.05 -21.18 16
8 N -0.60 -12.01 2.50 -817.72 -2.04 -14.05 16
9 C 0.12 2.14 5.30 87.20 0.46 2.60 16
10 C -0.15 -3.33 5.64 29.04 0.16 -3.17 16
11 C 0.12 2.54 5.66 84.23 0.48 3.02 16
12 N -0.60 -14.36 2.46 -831.20 -2.04 -16.40 16
13 C 0.53 19.30 7.47 87.66 0.65 19.96 16
14 O -0.57 -27.17 15.35 -3.04 -0.05 -27.22 16
15 C -0.13 -4.68 4.43 71.24 0.32 -4.36 16
16 S -0.16 -8.43 20.58 -56.49 -1.16 -9.59 16
17 C -0.54 -29.24 9.50 67.95 0.65 -28.59 16
18 H 0.09 4.31 7.80 -2.92 -0.02 4.29 16
19 C 0.01 0.77 5.49 84.86 0.47 1.24 16
20 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16
21 Si 0.99 42.12 29.55 68.60 2.03 44.15 16
22 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16
23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16
24 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16
25 C 0.08 1.10 4.98 87.55 0.44 1.53 16
26 C 0.06 0.79 4.21 86.56 0.36 1.16 16
27 H 0.05 1.14 6.95 -2.39 -0.02 1.13 16
28 H 0.08 1.23 6.43 -2.39 -0.02 1.22 16
29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16
31 H 0.04 1.15 7.99 -2.39 -0.02 1.13 16
32 H 0.06 1.80 3.23 -2.39 -0.01 1.79 16
33 H 0.09 2.16 7.47 -2.39 -0.02 2.14 16
34 H 0.03 1.13 7.95 -2.39 -0.02 1.12 16
35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
36 H 0.08 1.08 6.41 -2.38 -0.02 1.06 16
37 H 0.10 1.02 3.83 -2.38 -0.01 1.01 16
38 H 0.12 1.03 7.58 -2.39 -0.02 1.01 16
39 H 0.07 1.42 7.48 -2.39 -0.02 1.40 16
40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
41 H 0.02 0.62 7.84 -2.39 -0.02 0.61 16
42 H 0.06 1.67 7.19 -2.38 -0.02 1.66 16
43 H 0.12 1.41 8.05 -2.39 -0.02 1.39 16
44 H 0.11 3.69 7.83 -2.40 -0.02 3.67 16
45 H 0.11 3.55 5.42 -2.40 -0.01 3.54 16
46 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16
47 H 0.10 1.28 6.49 -2.39 -0.02 1.26 16
48 H 0.12 0.69 7.72 -2.39 -0.02 0.67 16
49 H 0.10 1.60 2.65 -2.39 -0.01 1.60 16
50 H 0.13 0.66 7.31 -2.39 -0.02 0.64 16
Total: -1.00 -86.09 382.46 4.27 -81.82
By element:
Atomic # 1 Polarization: 20.57 SS G_CDS: 0.95 Total: 21.52 kcal
Atomic # 6 Polarization: -10.07 SS G_CDS: 6.35 Total: -3.72 kcal
Atomic # 7 Polarization: -81.98 SS G_CDS: -3.80 Total: -85.78 kcal
Atomic # 8 Polarization: -48.31 SS G_CDS: -0.09 Total: -48.40 kcal
Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal
Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal
Total: -86.09 4.27 -81.82 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001737038528.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.997 kcal
(2) G-P(sol) polarization free energy of solvation -86.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.817 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds