Wall clock time and date at job start Sat Apr 11 2020 06:45:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47082 * 2 1
4 4 C 1.52996 * 109.47222 * 119.99765 * 2 1 3
5 5 C 1.50700 * 109.47108 * 174.99720 * 4 2 1
6 6 O 1.21280 * 119.99592 * 0.02562 * 5 4 2
7 7 N 1.34776 * 120.00201 * 180.02562 * 5 4 2
8 8 C 1.46503 * 120.00133 * 180.02562 * 7 5 4
9 9 C 1.52993 * 109.46946 * 180.02562 * 8 7 5
10 10 C 1.52999 * 110.79945 * 303.28762 * 9 8 7
11 11 C 1.54625 * 110.73731 * 180.02562 * 9 8 7
12 12 C 1.54004 * 105.13368 * 219.86169 * 11 9 8
13 13 N 1.47483 * 107.08427 * 358.64533 * 12 11 9
14 14 C 1.34779 * 127.03508 * 205.41336 * 13 12 11
15 15 O 1.21282 * 120.00376 * 180.02562 * 14 13 12
16 16 C 1.50696 * 119.99529 * 0.02562 * 14 13 12
17 17 S 1.81003 * 109.47127 * 180.02562 * 16 14 13
18 18 C 1.76192 * 100.00335 * 180.02562 * 17 16 14
19 19 H 1.08000 * 120.00161 * 359.97438 * 18 17 16
20 20 C 1.38808 * 120.00227 * 180.02562 * 18 17 16
21 21 N 1.31626 * 119.99464 * 359.97438 * 20 18 17
22 22 Si 1.86793 * 120.00110 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.47240 * 89.99765 * 22 20 18
24 24 H 1.48500 * 109.47009 * 210.00118 * 22 20 18
25 25 H 1.48507 * 109.47245 * 329.99727 * 22 20 18
26 26 C 1.48117 * 105.93483 * 25.44320 * 13 12 11
27 27 H 1.09005 * 109.46760 * 300.00220 * 1 2 3
28 28 H 1.08995 * 109.47257 * 59.99796 * 1 2 3
29 29 H 1.08998 * 109.47325 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46408 * 240.00137 * 2 1 3
31 31 H 1.08995 * 109.47197 * 180.02562 * 3 2 1
32 32 H 1.09011 * 109.46968 * 300.00118 * 3 2 1
33 33 H 1.08998 * 109.47188 * 59.99996 * 3 2 1
34 34 H 1.09002 * 109.46938 * 55.00049 * 4 2 1
35 35 H 1.08994 * 109.47245 * 295.00155 * 4 2 1
36 36 H 0.96996 * 119.99817 * 0.02562 * 7 5 4
37 37 H 1.08995 * 109.47098 * 59.99715 * 8 7 5
38 38 H 1.09001 * 109.46983 * 299.99849 * 8 7 5
39 39 H 1.09000 * 109.47203 * 296.71329 * 10 9 8
40 40 H 1.08994 * 109.47146 * 56.71141 * 10 9 8
41 41 H 1.09002 * 109.47218 * 176.71055 * 10 9 8
42 42 H 1.09002 * 110.32850 * 100.91865 * 11 9 8
43 43 H 1.09002 * 110.32519 * 338.80451 * 11 9 8
44 44 H 1.09001 * 109.90740 * 118.00138 * 12 11 9
45 45 H 1.08995 * 109.91416 * 239.28239 * 12 11 9
46 46 H 1.08999 * 109.47792 * 299.99930 * 16 14 13
47 47 H 1.09000 * 109.47497 * 60.00610 * 16 14 13
48 48 H 0.97007 * 119.99725 * 179.97438 * 21 20 18
49 49 H 1.09001 * 110.66111 * 79.14837 * 26 13 12
50 50 H 1.08999 * 110.66710 * 202.10273 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5419 -0.8294 1.1888
6 8 4.1450 -0.3740 0.2402
7 7 4.2150 -1.4321 2.1889
8 6 5.6751 -1.5368 2.1304
9 6 6.1849 -2.2592 3.3790
10 6 5.7265 -1.5390 4.6486
11 6 7.7257 -2.3853 3.3477
12 6 8.0249 -3.7944 3.8924
13 7 6.7299 -4.4082 4.2409
14 6 6.5102 -5.3797 5.1489
15 8 5.3854 -5.7936 5.3342
16 6 7.6624 -5.9519 5.9338
17 16 7.0495 -7.2278 7.0618
18 6 8.5606 -7.7093 7.8294
19 1 9.4869 -7.2327 7.5443
20 6 8.5608 -8.7019 8.7997
21 7 7.4319 -9.2830 9.1467
22 14 10.1629 -9.2128 9.6129
23 1 10.3933 -8.3789 10.8199
24 1 10.0843 -10.6425 10.0066
25 1 11.2849 -9.0231 8.6587
26 6 5.7202 -3.7390 3.3885
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 1.8932 -0.5138 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9564 -0.8901
33 1 1.6767 1.9563 0.8900
34 1 1.6054 -1.7197 1.2952
35 1 1.7517 -0.1583 2.1369
36 1 3.7326 -1.7966 2.9474
37 1 6.1094 -0.5381 2.0852
38 1 5.9637 -2.0991 1.2424
39 1 6.1624 -0.5403 4.6774
40 1 4.6394 -1.4611 4.6497
41 1 6.0512 -2.1025 5.5234
42 1 8.1807 -1.6281 3.9862
43 1 8.0928 -2.2885 2.3259
44 1 8.5240 -4.3897 3.1277
45 1 8.6531 -3.7236 4.7803
46 1 8.3868 -6.3913 5.2480
47 1 8.1407 -5.1583 6.5079
48 1 7.4320 -9.9770 9.8246
49 1 5.7343 -4.1516 2.3797
50 1 4.7261 -3.8301 3.8261
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001739808317.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:54
Heat of formation + Delta-G solvation = -93.127695 kcal
Electronic energy + Delta-G solvation = -27428.469058 eV
Core-core repulsion = 23581.076777 eV
Total energy + Delta-G solvation = -3847.392281 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.62113 -39.78269 -37.91893 -36.05495 -35.03016 -32.70924 -32.45330 -29.85927
-29.60471 -28.85559 -27.41860 -26.94008 -25.74154 -25.28840 -23.21667 -21.25213
-20.31475 -19.52641 -19.33897 -17.79563 -17.32051 -16.62287 -16.54953 -16.11178
-15.72870 -15.26290 -14.95519 -14.82439 -14.56534 -14.40755 -14.20901 -13.93714
-13.82195 -13.74522 -13.16874 -12.94156 -12.67899 -12.58920 -12.55064 -12.45982
-12.31242 -12.20847 -11.94585 -11.77719 -11.47776 -11.31281 -11.17557 -11.09897
-11.08070 -11.03485 -11.02776 -10.94956 -10.77914 -9.99523 -9.84164 -9.46861
-9.36044 -9.09090 -8.60443 -8.26745 -6.53352 -6.24217 -3.95090 2.36927
2.83723 2.86750 3.00423 3.20423 3.23905 3.28443 3.57118 4.09730
4.18107 4.18935 4.35854 4.40790 4.47140 4.55621 4.76554 4.91205
4.92298 4.96847 4.98163 5.11090 5.12812 5.21570 5.28574 5.31199
5.33399 5.34639 5.38973 5.46177 5.54536 5.56110 5.61062 5.63177
5.64880 5.68618 5.72925 5.78723 5.81253 5.89124 5.99249 6.00078
6.05220 6.10239 6.18675 6.31793 7.16822 7.57000 7.64758 7.93713
8.32627 8.50111 9.21125 10.83206
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.027059 B = 0.001823 C = 0.001744
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1034.518662 B =15356.335438 C =16048.983852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.081 4.081
3 C -0.153 4.153
4 C -0.140 4.140
5 C 0.513 3.487
6 O -0.539 6.539
7 N -0.731 5.731
8 C 0.138 3.862
9 C -0.090 4.090
10 C -0.136 4.136
11 C -0.120 4.120
12 C 0.102 3.898
13 N -0.627 5.627
14 C 0.553 3.447
15 O -0.516 6.516
16 C -0.147 4.147
17 S -0.060 6.060
18 C -0.536 4.536
19 H 0.073 0.927
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.919 3.081
23 H -0.277 1.277
24 H -0.282 1.282
25 H -0.272 1.272
26 C 0.115 3.885
27 H 0.055 0.945
28 H 0.057 0.943
29 H 0.055 0.945
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.051 0.949
33 H 0.047 0.953
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.402 0.598
37 H 0.072 0.928
38 H 0.071 0.929
39 H 0.060 0.940
40 H 0.056 0.944
41 H 0.065 0.935
42 H 0.081 0.919
43 H 0.081 0.919
44 H 0.068 0.932
45 H 0.078 0.922
46 H 0.089 0.911
47 H 0.089 0.911
48 H 0.269 0.731
49 H 0.070 0.930
50 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.704 21.101 -16.387 27.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.100 4.100
3 C -0.211 4.211
4 C -0.180 4.180
5 C 0.300 3.700
6 O -0.416 6.416
7 N -0.384 5.384
8 C 0.014 3.986
9 C -0.091 4.091
10 C -0.193 4.193
11 C -0.159 4.159
12 C -0.022 4.022
13 N -0.364 5.364
14 C 0.342 3.658
15 O -0.390 6.390
16 C -0.297 4.297
17 S 0.166 5.834
18 C -0.684 4.684
19 H 0.091 0.909
20 C -0.135 4.135
21 N -0.502 5.502
22 Si 0.745 3.255
23 H -0.203 1.203
24 H -0.207 1.207
25 H -0.197 1.197
26 C -0.008 4.008
27 H 0.074 0.926
28 H 0.076 0.924
29 H 0.074 0.926
30 H 0.096 0.904
31 H 0.092 0.908
32 H 0.070 0.930
33 H 0.066 0.934
34 H 0.112 0.888
35 H 0.111 0.889
36 H 0.237 0.763
37 H 0.090 0.910
38 H 0.090 0.910
39 H 0.079 0.921
40 H 0.075 0.925
41 H 0.085 0.915
42 H 0.100 0.900
43 H 0.099 0.901
44 H 0.086 0.914
45 H 0.096 0.904
46 H 0.107 0.893
47 H 0.107 0.893
48 H 0.078 0.922
49 H 0.088 0.912
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -8.034 20.570 -16.593 27.622
hybrid contribution 2.205 -0.094 0.744 2.329
sum -5.829 20.476 -15.849 26.541
Atomic orbital electron populations
1.21871 0.94916 1.01838 1.02000 1.20857 0.95104 0.96863 0.97128
1.21961 1.03061 0.95016 1.01016 1.21804 0.91855 1.03231 1.01077
1.20743 0.90255 0.77101 0.81918 1.90672 1.70501 1.47298 1.33130
1.46137 1.07880 1.60248 1.24153 1.21312 0.79848 1.00665 0.96813
1.21971 0.96262 0.95339 0.95549 1.21777 1.00992 1.00039 0.96488
1.22552 0.93983 0.96961 1.02399 1.22056 0.86515 0.92942 1.00662
1.48767 1.08842 1.38801 1.39994 1.20006 0.90448 0.77427 0.77944
1.90709 1.24276 1.58709 1.65305 1.23507 0.99354 1.04423 1.02463
1.85391 1.13224 1.41076 1.43683 1.22856 0.94015 1.25375 1.26148
0.90931 1.24992 0.97431 0.95215 0.95913 1.70018 1.25663 1.24477
1.30084 0.86165 0.82000 0.77908 0.79412 1.20258 1.20724 1.19690
1.22464 0.93873 0.89533 0.94917 0.92625 0.92391 0.92589 0.90439
0.90756 0.92988 0.93397 0.88752 0.88860 0.76261 0.90967 0.91038
0.92064 0.92549 0.91548 0.89998 0.90078 0.91376 0.90358 0.89296
0.89316 0.92164 0.91186 0.89835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16
2 C -0.08 -0.56 2.57 -90.62 -0.23 -0.79 16
3 C -0.15 -1.16 8.93 37.16 0.33 -0.83 16
4 C -0.14 -0.86 5.17 -27.88 -0.14 -1.01 16
5 C 0.51 4.47 7.55 -10.99 -0.08 4.38 16
6 O -0.54 -6.55 13.96 5.56 0.08 -6.47 16
7 N -0.73 -5.30 5.11 -60.30 -0.31 -5.61 16
8 C 0.14 1.03 4.53 -4.04 -0.02 1.02 16
9 C -0.09 -0.70 0.65 -152.54 -0.10 -0.80 16
10 C -0.14 -1.08 8.33 37.16 0.31 -0.77 16
11 C -0.12 -0.86 6.08 -25.35 -0.15 -1.02 16
12 C 0.10 1.00 6.75 -2.98 -0.02 0.98 16
13 N -0.63 -8.47 3.20 -169.66 -0.54 -9.01 16
14 C 0.55 10.33 7.91 -10.99 -0.09 10.25 16
15 O -0.52 -11.62 16.07 5.56 0.09 -11.53 16
16 C -0.15 -2.96 5.23 36.00 0.19 -2.77 16
17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16
18 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16
19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16
20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16
21 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16
22 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16
23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
26 C 0.12 1.24 5.70 -2.04 -0.01 1.22 16
27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
30 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16
31 H 0.07 0.72 5.95 -51.93 -0.31 0.41 16
32 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16
33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16
36 H 0.40 2.36 7.02 -40.82 -0.29 2.07 16
37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16
39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
40 H 0.06 0.40 6.69 -51.93 -0.35 0.06 16
41 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16
42 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16
43 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16
44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
45 H 0.08 0.77 7.54 -51.93 -0.39 0.38 16
46 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16
47 H 0.09 1.65 7.92 -51.92 -0.41 1.24 16
48 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16
49 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16
50 H 0.08 0.98 7.77 -51.93 -0.40 0.57 16
LS Contribution 413.02 15.07 6.22 6.22
Total: -1.00 -35.38 413.02 -9.27 -44.65
By element:
Atomic # 1 Polarization: 6.89 SS G_CDS: -8.83 Total: -1.94 kcal
Atomic # 6 Polarization: -3.98 SS G_CDS: 0.52 Total: -3.46 kcal
Atomic # 7 Polarization: -39.73 SS G_CDS: -0.12 Total: -39.84 kcal
Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal
Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -35.38 -9.27 -44.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001739808317.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.474 kcal
(2) G-P(sol) polarization free energy of solvation -35.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds