Wall clock time and date at job start Sat Apr 11 2020 06:45:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47082 * 2 1
4 4 C 1.52996 * 109.47222 * 119.99765 * 2 1 3
5 5 C 1.50700 * 109.47108 * 174.99720 * 4 2 1
6 6 O 1.21280 * 119.99592 * 0.02562 * 5 4 2
7 7 N 1.34776 * 120.00201 * 180.02562 * 5 4 2
8 8 C 1.46503 * 120.00133 * 180.02562 * 7 5 4
9 9 C 1.52993 * 109.46946 * 180.02562 * 8 7 5
10 10 C 1.52999 * 110.79945 * 303.28762 * 9 8 7
11 11 C 1.54625 * 110.73731 * 180.02562 * 9 8 7
12 12 C 1.54004 * 105.13368 * 219.86169 * 11 9 8
13 13 N 1.47483 * 107.08427 * 358.64533 * 12 11 9
14 14 C 1.34779 * 127.03508 * 205.41336 * 13 12 11
15 15 O 1.21282 * 120.00376 * 180.02562 * 14 13 12
16 16 C 1.50696 * 119.99529 * 0.02562 * 14 13 12
17 17 S 1.81003 * 109.47127 * 180.02562 * 16 14 13
18 18 C 1.76192 * 100.00335 * 180.02562 * 17 16 14
19 19 H 1.08000 * 120.00161 * 359.97438 * 18 17 16
20 20 C 1.38808 * 120.00227 * 180.02562 * 18 17 16
21 21 N 1.31626 * 119.99464 * 359.97438 * 20 18 17
22 22 Si 1.86793 * 120.00110 * 179.97438 * 20 18 17
23 23 H 1.48498 * 109.47240 * 89.99765 * 22 20 18
24 24 H 1.48500 * 109.47009 * 210.00118 * 22 20 18
25 25 H 1.48507 * 109.47245 * 329.99727 * 22 20 18
26 26 C 1.48117 * 105.93483 * 25.44320 * 13 12 11
27 27 H 1.09005 * 109.46760 * 300.00220 * 1 2 3
28 28 H 1.08995 * 109.47257 * 59.99796 * 1 2 3
29 29 H 1.08998 * 109.47325 * 180.02562 * 1 2 3
30 30 H 1.09001 * 109.46408 * 240.00137 * 2 1 3
31 31 H 1.08995 * 109.47197 * 180.02562 * 3 2 1
32 32 H 1.09011 * 109.46968 * 300.00118 * 3 2 1
33 33 H 1.08998 * 109.47188 * 59.99996 * 3 2 1
34 34 H 1.09002 * 109.46938 * 55.00049 * 4 2 1
35 35 H 1.08994 * 109.47245 * 295.00155 * 4 2 1
36 36 H 0.96996 * 119.99817 * 0.02562 * 7 5 4
37 37 H 1.08995 * 109.47098 * 59.99715 * 8 7 5
38 38 H 1.09001 * 109.46983 * 299.99849 * 8 7 5
39 39 H 1.09000 * 109.47203 * 296.71329 * 10 9 8
40 40 H 1.08994 * 109.47146 * 56.71141 * 10 9 8
41 41 H 1.09002 * 109.47218 * 176.71055 * 10 9 8
42 42 H 1.09002 * 110.32850 * 100.91865 * 11 9 8
43 43 H 1.09002 * 110.32519 * 338.80451 * 11 9 8
44 44 H 1.09001 * 109.90740 * 118.00138 * 12 11 9
45 45 H 1.08995 * 109.91416 * 239.28239 * 12 11 9
46 46 H 1.08999 * 109.47792 * 299.99930 * 16 14 13
47 47 H 1.09000 * 109.47497 * 60.00610 * 16 14 13
48 48 H 0.97007 * 119.99725 * 179.97438 * 21 20 18
49 49 H 1.09001 * 110.66111 * 79.14837 * 26 13 12
50 50 H 1.08999 * 110.66710 * 202.10273 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 3.5419 -0.8294 1.1888
6 8 4.1450 -0.3740 0.2402
7 7 4.2150 -1.4321 2.1889
8 6 5.6751 -1.5368 2.1304
9 6 6.1849 -2.2592 3.3790
10 6 5.7265 -1.5390 4.6486
11 6 7.7257 -2.3853 3.3477
12 6 8.0249 -3.7944 3.8924
13 7 6.7299 -4.4082 4.2409
14 6 6.5102 -5.3797 5.1489
15 8 5.3854 -5.7936 5.3342
16 6 7.6624 -5.9519 5.9338
17 16 7.0495 -7.2278 7.0618
18 6 8.5606 -7.7093 7.8294
19 1 9.4869 -7.2327 7.5443
20 6 8.5608 -8.7019 8.7997
21 7 7.4319 -9.2830 9.1467
22 14 10.1629 -9.2128 9.6129
23 1 10.3933 -8.3789 10.8199
24 1 10.0843 -10.6425 10.0066
25 1 11.2849 -9.0231 8.6587
26 6 5.7202 -3.7390 3.3885
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 1.8932 -0.5138 -0.8900
31 1 3.1300 1.4425 -0.0005
32 1 1.6766 1.9564 -0.8901
33 1 1.6767 1.9563 0.8900
34 1 1.6054 -1.7197 1.2952
35 1 1.7517 -0.1583 2.1369
36 1 3.7326 -1.7966 2.9474
37 1 6.1094 -0.5381 2.0852
38 1 5.9637 -2.0991 1.2424
39 1 6.1624 -0.5403 4.6774
40 1 4.6394 -1.4611 4.6497
41 1 6.0512 -2.1025 5.5234
42 1 8.1807 -1.6281 3.9862
43 1 8.0928 -2.2885 2.3259
44 1 8.5240 -4.3897 3.1277
45 1 8.6531 -3.7236 4.7803
46 1 8.3868 -6.3913 5.2480
47 1 8.1407 -5.1583 6.5079
48 1 7.4320 -9.9770 9.8246
49 1 5.7343 -4.1516 2.3797
50 1 4.7261 -3.8301 3.8261
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001739808317.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:45:53
Heat of formation + Delta-G solvation = -116.128080 kcal
Electronic energy + Delta-G solvation = -27429.466429 eV
Core-core repulsion = 23581.076777 eV
Total energy + Delta-G solvation = -3848.389652 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-41.48106 -40.68439 -39.09783 -36.68085 -35.84596 -34.59633 -33.63995 -31.03431
-30.64519 -29.46701 -27.93257 -27.85154 -27.54922 -26.38698 -24.06949 -21.89867
-20.98658 -20.63163 -20.25330 -19.50592 -18.24491 -17.83704 -17.38569 -16.89233
-16.82717 -16.65607 -16.42837 -15.93348 -15.64390 -15.31670 -15.26714 -14.88672
-14.64087 -14.57629 -14.43702 -13.97895 -13.66614 -13.59487 -13.49499 -13.22605
-13.15832 -13.02056 -12.91460 -12.86052 -12.75095 -12.64078 -12.62337 -12.05581
-11.98208 -11.84384 -11.71992 -11.70660 -11.59834 -11.55646 -11.15082 -10.97604
-10.69382 -10.29630 -10.02794 -9.73960 -8.68770 -8.35652 -6.14178 1.22994
1.42083 1.44317 1.55024 1.55595 1.71196 2.06653 2.26067 2.26484
2.98614 3.20092 3.39290 3.47938 3.69390 3.81135 3.88357 3.95080
4.04678 4.07632 4.19083 4.24283 4.29068 4.39751 4.43876 4.55507
4.65982 4.68004 4.71460 4.74256 4.74668 4.77447 4.86355 4.86760
4.90144 5.00112 5.04230 5.06398 5.13270 5.18698 5.26320 5.31949
5.40475 5.40872 5.41646 5.51353 5.57288 6.18721 6.40541 6.56490
7.05593 7.09877 7.30263 8.73567
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.027059 B = 0.001823 C = 0.001744
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1034.518662 B =15356.335438 C =16048.983852
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.082 4.082
3 C -0.150 4.150
4 C -0.137 4.137
5 C 0.510 3.490
6 O -0.577 6.577
7 N -0.725 5.725
8 C 0.144 3.856
9 C -0.073 4.073
10 C -0.135 4.135
11 C -0.112 4.112
12 C 0.091 3.909
13 N -0.618 5.618
14 C 0.551 3.449
15 O -0.566 6.566
16 C -0.121 4.121
17 S -0.149 6.149
18 C -0.547 4.547
19 H 0.082 0.918
20 C 0.014 3.986
21 N -0.910 5.910
22 Si 0.999 3.001
23 H -0.267 1.267
24 H -0.278 1.278
25 H -0.258 1.258
26 C 0.110 3.890
27 H 0.064 0.936
28 H 0.057 0.943
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.050 0.950
32 H 0.052 0.948
33 H 0.058 0.942
34 H 0.109 0.891
35 H 0.113 0.887
36 H 0.410 0.590
37 H 0.077 0.923
38 H 0.068 0.932
39 H 0.077 0.923
40 H 0.062 0.938
41 H 0.042 0.958
42 H 0.097 0.903
43 H 0.102 0.898
44 H 0.082 0.918
45 H 0.081 0.919
46 H 0.104 0.896
47 H 0.106 0.894
48 H 0.271 0.729
49 H 0.079 0.921
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.270 22.747 -16.878 28.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.101 4.101
3 C -0.208 4.208
4 C -0.176 4.176
5 C 0.298 3.702
6 O -0.457 6.457
7 N -0.378 5.378
8 C 0.019 3.981
9 C -0.074 4.074
10 C -0.192 4.192
11 C -0.151 4.151
12 C -0.031 4.031
13 N -0.352 5.352
14 C 0.340 3.660
15 O -0.445 6.445
16 C -0.272 4.272
17 S 0.078 5.922
18 C -0.695 4.695
19 H 0.100 0.900
20 C -0.191 4.191
21 N -0.547 5.547
22 Si 0.820 3.180
23 H -0.192 1.192
24 H -0.203 1.203
25 H -0.182 1.182
26 C -0.012 4.012
27 H 0.083 0.917
28 H 0.076 0.924
29 H 0.080 0.920
30 H 0.076 0.924
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.077 0.923
34 H 0.127 0.873
35 H 0.131 0.869
36 H 0.247 0.753
37 H 0.095 0.905
38 H 0.086 0.914
39 H 0.096 0.904
40 H 0.081 0.919
41 H 0.061 0.939
42 H 0.116 0.884
43 H 0.120 0.880
44 H 0.100 0.900
45 H 0.100 0.900
46 H 0.122 0.878
47 H 0.124 0.876
48 H 0.080 0.920
49 H 0.097 0.903
50 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -6.580 22.258 -17.107 28.833
hybrid contribution 1.745 -0.501 0.780 1.976
sum -4.835 21.757 -16.326 27.627
Atomic orbital electron populations
1.21832 0.93523 1.02367 1.02472 1.20842 0.96189 0.96253 0.96771
1.21915 1.01490 0.95732 1.01620 1.21846 0.90021 1.04321 1.01429
1.21180 0.91248 0.76386 0.81399 1.90662 1.71400 1.49006 1.34610
1.46122 1.07932 1.59640 1.24092 1.21243 0.79987 1.00652 0.96177
1.21824 0.96837 0.93038 0.95744 1.21773 1.01621 1.00451 0.95356
1.22580 0.93192 0.95398 1.03898 1.22415 0.84755 0.94525 1.01402
1.48669 1.11424 1.36931 1.38214 1.19678 0.89124 0.78434 0.78804
1.90686 1.25659 1.60870 1.67266 1.23304 1.00008 1.02482 1.01389
1.85557 1.15487 1.44679 1.46435 1.23192 0.94126 1.25737 1.26437
0.89962 1.26123 1.01477 0.95008 0.96442 1.70182 1.28397 1.25208
1.30896 0.84954 0.77056 0.77515 0.78461 1.19235 1.20284 1.18215
1.22685 0.92795 0.91329 0.94409 0.91708 0.92382 0.92038 0.92388
0.93068 0.92872 0.92310 0.87253 0.86924 0.75344 0.90526 0.91410
0.90448 0.91924 0.93864 0.88407 0.87966 0.89986 0.90045 0.87793
0.87583 0.91962 0.90314 0.91088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.35 9.19 71.98 0.66 -0.68 16
2 C -0.08 -1.06 2.57 -10.79 -0.03 -1.09 16
3 C -0.15 -2.19 8.93 71.98 0.64 -1.55 16
4 C -0.14 -1.47 5.17 29.85 0.15 -1.31 16
5 C 0.51 8.29 7.55 87.66 0.66 8.95 16
6 O -0.58 -13.80 13.96 -3.03 -0.04 -13.84 16
7 N -0.73 -9.28 5.11 -463.07 -2.37 -11.65 16
8 C 0.14 1.84 4.53 86.38 0.39 2.23 16
9 C -0.07 -0.97 0.65 -50.91 -0.03 -1.00 16
10 C -0.13 -1.87 8.33 71.98 0.60 -1.27 16
11 C -0.11 -1.24 6.08 31.49 0.19 -1.05 16
12 C 0.09 1.56 6.75 86.53 0.58 2.14 16
13 N -0.62 -15.96 3.20 -809.07 -2.59 -18.55 16
14 C 0.55 20.68 7.91 87.66 0.69 21.37 16
15 O -0.57 -26.36 16.07 -3.04 -0.05 -26.41 16
16 C -0.12 -4.84 5.23 71.23 0.37 -4.47 16
17 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16
18 C -0.55 -31.14 9.50 67.96 0.65 -30.49 16
19 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16
20 C 0.01 0.81 5.49 84.86 0.47 1.28 16
21 N -0.91 -55.67 13.22 21.65 0.29 -55.38 16
22 Si 1.00 43.24 29.55 68.60 2.03 45.27 16
23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16
25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
26 C 0.11 2.22 5.70 86.79 0.49 2.71 16
27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16
28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16
30 H 0.06 0.98 7.96 -2.39 -0.02 0.96 16
31 H 0.05 1.00 5.95 -2.39 -0.01 0.99 16
32 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16
33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
34 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16
36 H 0.41 4.07 7.02 -92.71 -0.65 3.42 16
37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
38 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16
39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
40 H 0.06 0.78 6.69 -2.39 -0.02 0.77 16
41 H 0.04 0.82 8.07 -2.39 -0.02 0.80 16
42 H 0.10 0.86 7.86 -2.39 -0.02 0.84 16
43 H 0.10 0.78 7.85 -2.39 -0.02 0.76 16
44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
45 H 0.08 1.38 7.54 -2.39 -0.02 1.36 16
46 H 0.10 3.83 8.14 -2.40 -0.02 3.81 16
47 H 0.11 3.85 7.92 -2.39 -0.02 3.83 16
48 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16
49 H 0.08 1.49 8.02 -2.39 -0.02 1.47 16
50 H 0.07 1.64 7.77 -2.39 -0.02 1.62 16
Total: -1.00 -80.24 413.02 2.87 -77.37
By element:
Atomic # 1 Polarization: 16.58 SS G_CDS: 0.26 Total: 16.85 kcal
Atomic # 6 Polarization: -10.72 SS G_CDS: 6.50 Total: -4.23 kcal
Atomic # 7 Polarization: -80.91 SS G_CDS: -4.67 Total: -85.58 kcal
Atomic # 8 Polarization: -40.16 SS G_CDS: -0.09 Total: -40.25 kcal
Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal
Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal
Total: -80.24 2.87 -77.37 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001739808317.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.756 kcal
(2) G-P(sol) polarization free energy of solvation -80.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds