Wall clock time and date at job start Sat Apr 11 2020 06:39:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.46723 * 2 1
4 4 C 1.50704 * 109.46876 * 179.97438 * 3 2 1
5 5 O 1.21284 * 120.00027 * 0.02562 * 4 3 2
6 6 N 1.34780 * 119.99855 * 179.97438 * 4 3 2
7 7 C 1.46499 * 119.99552 * 180.02562 * 6 4 3
8 8 C 1.53004 * 109.46862 * 180.02562 * 7 6 4
9 9 H 1.09002 * 109.47156 * 295.00301 * 8 7 6
10 10 N 1.46496 * 109.46938 * 55.00584 * 8 7 6
11 11 C 1.34780 * 119.99773 * 244.80209 * 10 8 7
12 12 O 1.21290 * 119.99695 * 355.04127 * 11 10 8
13 13 C 1.50700 * 120.00031 * 174.76709 * 11 10 8
14 14 S 1.81001 * 109.47020 * 180.27653 * 13 11 10
15 15 C 1.76194 * 99.99952 * 180.02562 * 14 13 11
16 16 H 1.08002 * 120.00144 * 359.97438 * 15 14 13
17 17 C 1.38805 * 120.00057 * 180.02562 * 15 14 13
18 18 N 1.31625 * 119.99795 * 359.97438 * 17 15 14
19 19 Si 1.86799 * 119.99933 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47347 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.47364 * 120.00040 * 19 17 15
22 22 H 1.48499 * 109.46984 * 239.99814 * 19 17 15
23 23 C 1.53005 * 109.46829 * 175.00341 * 8 7 6
24 24 C 1.54268 * 110.03346 * 297.06573 * 23 8 7
25 25 C 1.54966 * 104.15892 * 217.14065 * 24 23 8
26 26 C 1.54884 * 102.77946 * 37.89001 * 25 24 23
27 27 C 1.53879 * 110.02912 * 179.84931 * 23 8 7
28 28 H 1.09000 * 109.47424 * 300.00030 * 1 2 3
29 29 H 1.09002 * 109.47100 * 59.99919 * 1 2 3
30 30 H 1.08999 * 109.46890 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46915 * 240.00769 * 2 1 3
32 32 H 1.08996 * 109.46705 * 120.00292 * 2 1 3
33 33 H 1.09007 * 109.47043 * 60.00491 * 3 2 1
34 34 H 1.08996 * 109.47768 * 299.99640 * 3 2 1
35 35 H 0.96989 * 120.00332 * 0.02562 * 6 4 3
36 36 H 1.09005 * 109.47273 * 60.00777 * 7 6 4
37 37 H 1.09002 * 109.47457 * 300.00347 * 7 6 4
38 38 H 0.96994 * 120.00384 * 64.80179 * 10 8 7
39 39 H 1.08993 * 109.46904 * 300.27448 * 13 11 10
40 40 H 1.08994 * 109.47106 * 60.27481 * 13 11 10
41 41 H 0.97005 * 119.99781 * 180.02562 * 18 17 15
42 42 H 1.08994 * 110.02045 * 58.46024 * 23 8 7
43 43 H 1.09009 * 110.48252 * 335.78575 * 24 23 8
44 44 H 1.09000 * 110.48723 * 98.42696 * 24 23 8
45 45 H 1.08995 * 110.72014 * 279.57350 * 25 24 23
46 46 H 1.08998 * 110.91912 * 156.29475 * 25 24 23
47 47 H 1.08999 * 110.48894 * 203.40840 * 26 25 24
48 48 H 1.08997 * 110.60635 * 80.81241 * 26 25 24
49 49 H 1.08994 * 110.03117 * 238.56492 * 27 23 8
50 50 H 1.08998 * 110.02960 * 359.95182 * 27 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5470 1.4426 0.0006
5 8 4.1534 0.3922 0.0006
6 7 4.2208 2.6098 0.0002
7 6 5.6858 2.6098 0.0003
8 6 6.1958 4.0523 0.0004
9 1 5.9074 4.5398 -0.9309
10 7 5.6117 4.7766 1.1319
11 6 4.7730 5.8083 0.9110
12 8 4.5720 6.1948 -0.2210
13 6 4.0803 6.4777 2.0699
14 16 3.0234 7.8111 1.4526
15 6 2.3576 8.4026 2.9728
16 1 2.6454 7.9393 3.9050
17 6 1.4623 9.4633 2.9724
18 7 1.1111 10.0276 1.8363
19 14 0.7558 10.0898 4.5841
20 1 1.3051 9.2912 5.7092
21 1 1.1233 11.5173 4.7641
22 1 -0.7232 9.9586 4.5605
23 6 7.7207 4.0541 0.1261
24 6 8.1405 3.4329 1.4743
25 6 9.3625 4.2771 1.9165
26 6 8.9699 5.7076 1.4712
27 6 8.2480 5.4997 0.1237
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5137 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 1.6766 1.9563 0.8901
34 1 1.6767 1.9564 -0.8899
35 1 3.7359 3.4498 -0.0001
36 1 6.0492 2.0957 -0.8896
37 1 6.0492 2.0962 0.8904
38 1 5.8285 4.5138 2.0400
39 1 3.4702 5.7464 2.6000
40 1 4.8258 6.8901 2.7498
41 1 0.4857 10.7691 1.8360
42 1 8.1636 3.4938 -0.6972
43 1 7.3336 3.5197 2.2021
44 1 8.4249 2.3891 1.3413
45 1 10.2655 3.9469 1.4030
46 1 9.4962 4.2320 2.9973
47 1 9.8594 6.3229 1.3364
48 1 8.2976 6.1645 2.1975
49 1 8.9475 5.6406 -0.7002
50 1 7.4177 6.1999 0.0322
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001299475407.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:18
Heat of formation + Delta-G solvation = -110.091547 kcal
Electronic energy + Delta-G solvation = -28214.817872 eV
Core-core repulsion = 24366.689984 eV
Total energy + Delta-G solvation = -3848.127888 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-40.47447 -39.44176 -38.09728 -35.56656 -34.44289 -33.56242 -32.48247 -31.21553
-29.02357 -28.71369 -28.50477 -26.46002 -25.53179 -22.93114 -21.84352 -21.23886
-20.46874 -20.23825 -19.40293 -17.92962 -17.26116 -16.63602 -16.52016 -16.10696
-15.91187 -15.46892 -15.01564 -14.85326 -14.77482 -14.47841 -14.03055 -13.97968
-13.53029 -13.41678 -13.28583 -13.21743 -12.94590 -12.55244 -12.43087 -12.06018
-12.01157 -11.90923 -11.35251 -11.28103 -11.20820 -11.16028 -11.11176 -11.08174
-10.89750 -10.88320 -10.83046 -10.77635 -10.64214 -9.90670 -9.85642 -9.53273
-9.14538 -9.13317 -9.02251 -8.30468 -6.56418 -6.27437 -3.98213 2.58813
2.91673 2.93052 3.10275 3.17684 3.24761 3.28825 3.63059 4.15115
4.30182 4.41334 4.50213 4.63006 4.74916 4.80669 4.86381 4.96551
5.08326 5.11227 5.13803 5.28339 5.29165 5.31172 5.36663 5.41215
5.45062 5.50614 5.52356 5.55505 5.57943 5.63122 5.68152 5.78201
5.79518 5.86307 5.89089 5.97754 6.00583 6.04494 6.06543 6.15532
6.18953 6.22924 6.33456 6.55692 7.41008 7.54628 7.58326 8.14922
8.29939 8.47287 9.18618 10.79923
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.006723 B = 0.003675 C = 0.002550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4164.041859 B = 7617.537188 C =10979.378937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.106 4.106
3 C -0.145 4.145
4 C 0.513 3.487
5 O -0.549 6.549
6 N -0.726 5.726
7 C 0.109 3.891
8 C 0.133 3.867
9 H 0.109 0.891
10 N -0.729 5.729
11 C 0.532 3.468
12 O -0.516 6.516
13 C -0.155 4.155
14 S -0.057 6.057
15 C -0.536 4.536
16 H 0.073 0.927
17 C 0.075 3.925
18 N -0.867 5.867
19 Si 0.917 3.083
20 H -0.272 1.272
21 H -0.280 1.280
22 H -0.280 1.280
23 C -0.097 4.097
24 C -0.121 4.121
25 C -0.124 4.124
26 C -0.123 4.123
27 C -0.119 4.119
28 H 0.056 0.944
29 H 0.055 0.945
30 H 0.056 0.944
31 H 0.067 0.933
32 H 0.067 0.933
33 H 0.095 0.905
34 H 0.095 0.905
35 H 0.406 0.594
36 H 0.075 0.925
37 H 0.071 0.929
38 H 0.399 0.601
39 H 0.089 0.911
40 H 0.089 0.911
41 H 0.268 0.732
42 H 0.083 0.917
43 H 0.065 0.935
44 H 0.067 0.933
45 H 0.065 0.935
46 H 0.064 0.936
47 H 0.062 0.938
48 H 0.066 0.934
49 H 0.062 0.938
50 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.734 -16.421 -1.638 19.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.144 4.144
3 C -0.185 4.185
4 C 0.300 3.700
5 O -0.427 6.427
6 N -0.379 5.379
7 C -0.016 4.016
8 C 0.027 3.973
9 H 0.127 0.873
10 N -0.384 5.384
11 C 0.319 3.681
12 O -0.390 6.390
13 C -0.306 4.306
14 S 0.169 5.831
15 C -0.685 4.685
16 H 0.091 0.909
17 C -0.135 4.135
18 N -0.502 5.502
19 Si 0.744 3.256
20 H -0.196 1.196
21 H -0.205 1.205
22 H -0.205 1.205
23 C -0.116 4.116
24 C -0.159 4.159
25 C -0.161 4.161
26 C -0.161 4.161
27 C -0.156 4.156
28 H 0.075 0.925
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.114 0.886
34 H 0.113 0.887
35 H 0.241 0.759
36 H 0.093 0.907
37 H 0.089 0.911
38 H 0.234 0.766
39 H 0.107 0.893
40 H 0.107 0.893
41 H 0.078 0.922
42 H 0.102 0.898
43 H 0.084 0.916
44 H 0.086 0.914
45 H 0.083 0.917
46 H 0.083 0.917
47 H 0.081 0.919
48 H 0.085 0.915
49 H 0.081 0.919
50 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 10.709 -16.389 -3.629 19.911
hybrid contribution -0.310 0.389 2.805 2.849
sum 10.399 -15.999 -0.824 19.100
Atomic orbital electron populations
1.21806 0.95437 1.01813 1.02107 1.21253 0.95322 0.94615 1.03253
1.21755 0.91592 1.00192 1.04928 1.20792 0.90473 0.83345 0.75350
1.90676 1.70687 1.31357 1.49981 1.46022 1.07240 1.09207 1.75400
1.21761 0.80383 0.96699 1.02732 1.21274 0.92687 0.90808 0.92544
0.87277 1.46090 1.48664 1.34254 1.09392 1.20389 0.78098 0.78899
0.90761 1.90720 1.62107 1.62468 1.23745 1.23547 1.03328 1.04218
0.99505 1.85376 1.51806 1.33890 1.12005 1.22902 1.31359 1.20909
0.93288 0.90917 1.24977 0.95583 0.95499 0.97400 1.70019 1.32122
1.22767 1.25315 0.86137 0.78767 0.78692 0.82034 1.19619 1.20541
1.20539 1.22065 0.93574 0.97381 0.98626 1.22470 0.97927 0.99151
0.96361 1.22489 0.97725 0.95311 1.00584 1.22335 0.99920 0.96646
0.97168 1.22142 1.00237 0.95753 0.97491 0.92492 0.92561 0.92532
0.91436 0.91415 0.88637 0.88692 0.75891 0.90693 0.91100 0.76574
0.89264 0.89300 0.92206 0.89820 0.91596 0.91415 0.91654 0.91712
0.91929 0.91535 0.91939 0.90836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16
2 C -0.11 -1.04 5.22 -26.73 -0.14 -1.18 16
3 C -0.14 -1.45 5.70 -27.88 -0.16 -1.61 16
4 C 0.51 6.36 7.83 -10.98 -0.09 6.27 16
5 O -0.55 -8.44 15.98 5.55 0.09 -8.35 16
6 N -0.73 -8.25 5.39 -60.29 -0.32 -8.57 16
7 C 0.11 1.11 5.25 -4.04 -0.02 1.09 16
8 C 0.13 1.34 2.04 -67.93 -0.14 1.20 16
9 H 0.11 1.35 6.91 -51.93 -0.36 0.99 16
10 N -0.73 -8.18 3.75 -53.80 -0.20 -8.38 16
11 C 0.53 8.51 6.95 -10.98 -0.08 8.44 16
12 O -0.52 -10.14 15.20 5.55 0.08 -10.06 16
13 C -0.16 -2.85 6.16 36.01 0.22 -2.63 16
14 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16
15 C -0.54 -14.71 9.50 30.94 0.29 -14.41 16
16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16
17 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
18 N -0.87 -25.40 13.22 55.49 0.73 -24.66 16
19 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16
20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
23 C -0.10 -0.82 2.81 -89.50 -0.25 -1.07 16
24 C -0.12 -0.92 5.13 -25.03 -0.13 -1.05 16
25 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16
26 C -0.12 -1.11 6.83 -25.07 -0.17 -1.29 16
27 C -0.12 -1.17 6.19 -25.61 -0.16 -1.33 16
28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16
32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16
33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.41 4.81 7.61 -40.82 -0.31 4.50 16
36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16
38 H 0.40 3.79 6.96 -40.82 -0.28 3.50 16
39 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16
40 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16
41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
43 H 0.07 0.50 5.96 -51.92 -0.31 0.19 16
44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
50 H 0.07 0.93 7.12 -51.93 -0.37 0.56 16
LS Contribution 413.06 15.07 6.22 6.22
Total: -1.00 -33.02 413.06 -10.07 -43.10
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -8.73 Total: 6.13 kcal
Atomic # 6 Polarization: -6.89 SS G_CDS: -0.71 Total: -7.60 kcal
Atomic # 7 Polarization: -41.82 SS G_CDS: 0.21 Total: -41.61 kcal
Atomic # 8 Polarization: -18.58 SS G_CDS: 0.17 Total: -18.41 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal
Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -33.02 -10.07 -43.10 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001299475407.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.995 kcal
(2) G-P(sol) polarization free energy of solvation -33.023 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds