Wall clock time and date at job start Sat Apr 11 2020 06:39:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.46723 * 2 1
4 4 C 1.50704 * 109.46876 * 179.97438 * 3 2 1
5 5 O 1.21284 * 120.00027 * 0.02562 * 4 3 2
6 6 N 1.34780 * 119.99855 * 179.97438 * 4 3 2
7 7 C 1.46499 * 119.99552 * 180.02562 * 6 4 3
8 8 C 1.53004 * 109.46862 * 180.02562 * 7 6 4
9 9 H 1.09002 * 109.47156 * 295.00301 * 8 7 6
10 10 N 1.46496 * 109.46938 * 55.00584 * 8 7 6
11 11 C 1.34780 * 119.99773 * 244.80209 * 10 8 7
12 12 O 1.21290 * 119.99695 * 355.04127 * 11 10 8
13 13 C 1.50700 * 120.00031 * 174.76709 * 11 10 8
14 14 S 1.81001 * 109.47020 * 180.27653 * 13 11 10
15 15 C 1.76194 * 99.99952 * 180.02562 * 14 13 11
16 16 H 1.08002 * 120.00144 * 359.97438 * 15 14 13
17 17 C 1.38805 * 120.00057 * 180.02562 * 15 14 13
18 18 N 1.31625 * 119.99795 * 359.97438 * 17 15 14
19 19 Si 1.86799 * 119.99933 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.47347 * 359.97438 * 19 17 15
21 21 H 1.48503 * 109.47364 * 120.00040 * 19 17 15
22 22 H 1.48499 * 109.46984 * 239.99814 * 19 17 15
23 23 C 1.53005 * 109.46829 * 175.00341 * 8 7 6
24 24 C 1.54268 * 110.03346 * 297.06573 * 23 8 7
25 25 C 1.54966 * 104.15892 * 217.14065 * 24 23 8
26 26 C 1.54884 * 102.77946 * 37.89001 * 25 24 23
27 27 C 1.53879 * 110.02912 * 179.84931 * 23 8 7
28 28 H 1.09000 * 109.47424 * 300.00030 * 1 2 3
29 29 H 1.09002 * 109.47100 * 59.99919 * 1 2 3
30 30 H 1.08999 * 109.46890 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46915 * 240.00769 * 2 1 3
32 32 H 1.08996 * 109.46705 * 120.00292 * 2 1 3
33 33 H 1.09007 * 109.47043 * 60.00491 * 3 2 1
34 34 H 1.08996 * 109.47768 * 299.99640 * 3 2 1
35 35 H 0.96989 * 120.00332 * 0.02562 * 6 4 3
36 36 H 1.09005 * 109.47273 * 60.00777 * 7 6 4
37 37 H 1.09002 * 109.47457 * 300.00347 * 7 6 4
38 38 H 0.96994 * 120.00384 * 64.80179 * 10 8 7
39 39 H 1.08993 * 109.46904 * 300.27448 * 13 11 10
40 40 H 1.08994 * 109.47106 * 60.27481 * 13 11 10
41 41 H 0.97005 * 119.99781 * 180.02562 * 18 17 15
42 42 H 1.08994 * 110.02045 * 58.46024 * 23 8 7
43 43 H 1.09009 * 110.48252 * 335.78575 * 24 23 8
44 44 H 1.09000 * 110.48723 * 98.42696 * 24 23 8
45 45 H 1.08995 * 110.72014 * 279.57350 * 25 24 23
46 46 H 1.08998 * 110.91912 * 156.29475 * 25 24 23
47 47 H 1.08999 * 110.48894 * 203.40840 * 26 25 24
48 48 H 1.08997 * 110.60635 * 80.81241 * 26 25 24
49 49 H 1.08994 * 110.03117 * 238.56492 * 27 23 8
50 50 H 1.08998 * 110.02960 * 359.95182 * 27 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5470 1.4426 0.0006
5 8 4.1534 0.3922 0.0006
6 7 4.2208 2.6098 0.0002
7 6 5.6858 2.6098 0.0003
8 6 6.1958 4.0523 0.0004
9 1 5.9074 4.5398 -0.9309
10 7 5.6117 4.7766 1.1319
11 6 4.7730 5.8083 0.9110
12 8 4.5720 6.1948 -0.2210
13 6 4.0803 6.4777 2.0699
14 16 3.0234 7.8111 1.4526
15 6 2.3576 8.4026 2.9728
16 1 2.6454 7.9393 3.9050
17 6 1.4623 9.4633 2.9724
18 7 1.1111 10.0276 1.8363
19 14 0.7558 10.0898 4.5841
20 1 1.3051 9.2912 5.7092
21 1 1.1233 11.5173 4.7641
22 1 -0.7232 9.9586 4.5605
23 6 7.7207 4.0541 0.1261
24 6 8.1405 3.4329 1.4743
25 6 9.3625 4.2771 1.9165
26 6 8.9699 5.7076 1.4712
27 6 8.2480 5.4997 0.1237
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 1.8933 -0.5137 -0.8901
32 1 1.8933 -0.5139 0.8899
33 1 1.6766 1.9563 0.8901
34 1 1.6767 1.9564 -0.8899
35 1 3.7359 3.4498 -0.0001
36 1 6.0492 2.0957 -0.8896
37 1 6.0492 2.0962 0.8904
38 1 5.8285 4.5138 2.0400
39 1 3.4702 5.7464 2.6000
40 1 4.8258 6.8901 2.7498
41 1 0.4857 10.7691 1.8360
42 1 8.1636 3.4938 -0.6972
43 1 7.3336 3.5197 2.2021
44 1 8.4249 2.3891 1.3413
45 1 10.2655 3.9469 1.4030
46 1 9.4962 4.2320 2.9973
47 1 9.8594 6.3229 1.3364
48 1 8.2976 6.1645 2.1975
49 1 8.9475 5.6406 -0.7002
50 1 7.4177 6.1999 0.0322
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001299475407.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:17
Heat of formation + Delta-G solvation = -130.786294 kcal
Electronic energy + Delta-G solvation = -28215.715264 eV
Core-core repulsion = 24366.689984 eV
Total energy + Delta-G solvation = -3849.025280 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.50245 -40.48450 -39.12221 -36.50120 -35.26685 -34.65763 -34.55771 -32.30296
-30.11002 -29.64213 -29.27479 -27.65716 -27.23847 -23.80218 -22.64944 -22.27778
-21.36437 -21.14637 -20.26842 -19.79674 -18.20522 -17.96723 -17.50596 -16.99367
-16.86638 -16.82285 -16.43958 -16.20553 -15.93365 -15.65208 -15.16938 -14.95762
-14.62210 -14.57920 -14.26727 -14.14730 -13.98689 -13.77548 -13.47673 -13.22827
-13.13844 -12.91621 -12.83925 -12.67254 -12.59121 -12.11242 -12.03075 -11.92350
-11.86933 -11.74760 -11.64973 -11.58629 -11.48405 -11.41675 -11.14656 -10.91776
-10.90953 -10.24149 -10.12173 -10.10946 -8.62513 -8.33817 -6.09884 1.28579
1.41148 1.48001 1.58330 1.61045 1.61800 2.14361 2.27224 2.32928
3.00946 3.33762 3.51025 3.66536 3.77028 3.78647 3.94089 3.97915
4.04436 4.09037 4.21682 4.30369 4.40301 4.52616 4.54017 4.58126
4.60031 4.65622 4.67376 4.73355 4.75920 4.77978 4.83239 4.90577
4.97986 5.05521 5.11483 5.19266 5.25964 5.27183 5.33105 5.35047
5.43755 5.44001 5.48198 5.51601 5.55084 6.21215 6.43188 6.48746
7.08759 7.17846 7.24212 8.75164
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.006723 B = 0.003675 C = 0.002550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4164.041859 B = 7617.537188 C =10979.378937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.103 4.103
3 C -0.143 4.143
4 C 0.511 3.489
5 O -0.581 6.581
6 N -0.725 5.725
7 C 0.113 3.887
8 C 0.141 3.859
9 H 0.088 0.912
10 N -0.703 5.703
11 C 0.541 3.459
12 O -0.556 6.556
13 C -0.133 4.133
14 S -0.138 6.138
15 C -0.547 4.547
16 H 0.080 0.920
17 C 0.017 3.983
18 N -0.910 5.910
19 Si 0.993 3.007
20 H -0.258 1.258
21 H -0.276 1.276
22 H -0.274 1.274
23 C -0.090 4.090
24 C -0.119 4.119
25 C -0.118 4.118
26 C -0.124 4.124
27 C -0.119 4.119
28 H 0.059 0.941
29 H 0.060 0.940
30 H 0.063 0.937
31 H 0.057 0.943
32 H 0.058 0.942
33 H 0.105 0.895
34 H 0.105 0.895
35 H 0.404 0.596
36 H 0.079 0.921
37 H 0.080 0.920
38 H 0.412 0.588
39 H 0.108 0.892
40 H 0.103 0.897
41 H 0.270 0.730
42 H 0.100 0.900
43 H 0.066 0.934
44 H 0.081 0.919
45 H 0.074 0.926
46 H 0.072 0.928
47 H 0.065 0.935
48 H 0.054 0.946
49 H 0.067 0.933
50 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.548 -17.818 0.107 21.233
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.142 4.142
3 C -0.183 4.183
4 C 0.300 3.700
5 O -0.461 6.461
6 N -0.376 5.376
7 C -0.012 4.012
8 C 0.036 3.964
9 H 0.106 0.894
10 N -0.358 5.358
11 C 0.327 3.673
12 O -0.433 6.433
13 C -0.284 4.284
14 S 0.089 5.911
15 C -0.695 4.695
16 H 0.098 0.902
17 C -0.188 4.188
18 N -0.546 5.546
19 Si 0.815 3.185
20 H -0.182 1.182
21 H -0.201 1.201
22 H -0.200 1.200
23 C -0.110 4.110
24 C -0.156 4.156
25 C -0.155 4.155
26 C -0.162 4.162
27 C -0.157 4.157
28 H 0.078 0.922
29 H 0.079 0.921
30 H 0.082 0.918
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.124 0.876
34 H 0.123 0.877
35 H 0.239 0.761
36 H 0.097 0.903
37 H 0.098 0.902
38 H 0.250 0.750
39 H 0.127 0.873
40 H 0.121 0.879
41 H 0.079 0.921
42 H 0.118 0.882
43 H 0.085 0.915
44 H 0.100 0.900
45 H 0.093 0.907
46 H 0.090 0.910
47 H 0.083 0.917
48 H 0.073 0.927
49 H 0.086 0.914
50 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 11.557 -17.812 -1.861 21.314
hybrid contribution -0.455 0.760 2.216 2.386
sum 11.102 -17.052 0.354 20.351
Atomic orbital electron populations
1.21783 0.94110 1.02474 1.02450 1.21215 0.96407 0.94210 1.02325
1.21810 0.90011 1.00633 1.05857 1.21168 0.91359 0.82943 0.74579
1.90659 1.71462 1.32351 1.51639 1.46084 1.07799 1.08888 1.74793
1.21796 0.79760 0.96257 1.03369 1.21275 0.93896 0.90337 0.90898
0.89401 1.45809 1.46836 1.32505 1.10670 1.19950 0.78490 0.79572
0.89296 1.90718 1.63743 1.63958 1.24924 1.23387 1.02594 1.02067
1.00384 1.85499 1.54165 1.37721 1.13744 1.23239 1.31406 1.21145
0.93660 0.90184 1.26024 0.95905 0.95665 1.01176 1.70171 1.33041
1.23497 1.27908 0.84992 0.77955 0.78081 0.77481 1.18190 1.20114
1.19959 1.22051 0.91852 0.96870 1.00208 1.22480 0.97979 0.99824
0.95362 1.22465 0.98009 0.93869 1.01154 1.22334 0.99674 0.97894
0.96297 1.22119 0.99349 0.95822 0.98387 0.92193 0.92133 0.91775
0.92371 0.92357 0.87642 0.87675 0.76098 0.90291 0.90162 0.75011
0.87342 0.87890 0.92055 0.88160 0.91494 0.90019 0.90728 0.90971
0.91668 0.92704 0.91380 0.94063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16
2 C -0.10 -1.95 5.22 30.60 0.16 -1.79 16
3 C -0.14 -2.73 5.70 29.85 0.17 -2.56 16
4 C 0.51 12.21 7.83 87.66 0.69 12.89 16
5 O -0.58 -17.42 15.98 -3.04 -0.05 -17.46 16
6 N -0.72 -15.68 5.39 -463.03 -2.49 -18.17 16
7 C 0.11 2.10 5.25 86.38 0.45 2.55 16
8 C 0.14 2.70 2.04 45.00 0.09 2.79 16
9 H 0.09 2.16 6.91 -2.39 -0.02 2.15 16
10 N -0.70 -14.92 3.75 -442.51 -1.66 -16.58 16
11 C 0.54 17.16 6.95 87.66 0.61 17.77 16
12 O -0.56 -22.37 15.20 -3.06 -0.05 -22.41 16
13 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16
14 S -0.14 -7.22 20.57 -56.49 -1.16 -8.38 16
15 C -0.55 -30.05 9.50 67.96 0.65 -29.41 16
16 H 0.08 4.12 7.80 -2.91 -0.02 4.09 16
17 C 0.02 0.96 5.49 84.86 0.47 1.42 16
18 N -0.91 -54.29 13.22 21.65 0.29 -54.00 16
19 Si 0.99 42.51 29.55 68.60 2.03 44.54 16
20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16
21 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16
22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
23 C -0.09 -1.36 2.81 -10.07 -0.03 -1.39 16
24 C -0.12 -1.45 5.13 31.70 0.16 -1.29 16
25 C -0.12 -1.47 6.91 31.91 0.22 -1.25 16
26 C -0.12 -2.07 6.83 31.67 0.22 -1.86 16
27 C -0.12 -2.24 6.19 31.32 0.19 -2.05 16
28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
31 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16
32 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16
33 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16
34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16
35 H 0.40 9.27 7.61 -92.72 -0.71 8.56 16
36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16
37 H 0.08 1.40 7.13 -2.39 -0.02 1.38 16
38 H 0.41 6.88 6.96 -92.71 -0.65 6.24 16
39 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16
40 H 0.10 3.44 8.14 -2.40 -0.02 3.42 16
41 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16
42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
43 H 0.07 0.80 5.96 -2.38 -0.01 0.79 16
44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
48 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16
49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
50 H 0.04 1.05 7.12 -2.39 -0.02 1.04 16
Total: -1.00 -73.24 413.06 1.68 -71.56
By element:
Atomic # 1 Polarization: 31.42 SS G_CDS: -0.42 Total: 31.00 kcal
Atomic # 6 Polarization: -15.28 SS G_CDS: 5.20 Total: -10.08 kcal
Atomic # 7 Polarization: -84.89 SS G_CDS: -3.87 Total: -88.76 kcal
Atomic # 8 Polarization: -39.78 SS G_CDS: -0.10 Total: -39.88 kcal
Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal
Atomic # 16 Polarization: -7.22 SS G_CDS: -1.16 Total: -8.38 kcal
Total: -73.24 1.68 -71.56 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001299475407.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.229 kcal
(2) G-P(sol) polarization free energy of solvation -73.241 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.470 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.786 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds