Wall clock time and date at job start Sat Apr 11 2020 06:41:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53006 * 109.46626 * 2 1
4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1
5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2
6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2
7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3
8 8 C 1.52996 * 109.47364 * 179.97438 * 7 6 4
9 9 H 1.09007 * 109.45560 * 55.00174 * 8 7 6
10 10 C 1.53042 * 109.46339 * 295.02955 * 8 7 6
11 11 C 1.53189 * 109.31379 * 178.59416 * 10 8 7
12 12 N 1.46931 * 108.75974 * 54.65632 * 11 10 8
13 13 C 1.34779 * 120.62660 * 126.36041 * 12 11 10
14 14 O 1.21286 * 120.00052 * 180.02562 * 13 12 11
15 15 C 1.50697 * 120.00192 * 0.02562 * 13 12 11
16 16 S 1.81002 * 109.47302 * 179.97438 * 15 13 12
17 17 C 1.76195 * 100.00030 * 179.97438 * 16 15 13
18 18 H 1.07995 * 120.00477 * 359.97438 * 17 16 15
19 19 C 1.38808 * 119.99791 * 180.02562 * 17 16 15
20 20 N 1.31631 * 119.99775 * 180.02562 * 19 17 16
21 21 Si 1.86801 * 119.99796 * 359.97438 * 19 17 16
22 22 H 1.48504 * 109.46936 * 90.00441 * 21 19 17
23 23 H 1.48501 * 109.46711 * 209.99778 * 21 19 17
24 24 H 1.48493 * 109.47420 * 330.00101 * 21 19 17
25 25 C 1.46921 * 118.74119 * 306.37936 * 12 11 10
26 26 C 1.53039 * 109.45998 * 174.97087 * 8 7 6
27 27 H 1.08997 * 109.50191 * 301.34022 * 26 8 7
28 28 C 1.52994 * 109.49623 * 61.44117 * 26 8 7
29 29 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3
31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3
32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3
33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3
34 34 H 1.09000 * 109.47050 * 299.99699 * 3 2 1
35 35 H 1.09001 * 109.46801 * 59.99811 * 3 2 1
36 36 H 0.96996 * 119.99844 * 359.97438 * 6 4 3
37 37 H 1.09004 * 109.46923 * 300.00119 * 7 6 4
38 38 H 1.09004 * 109.47042 * 59.99705 * 7 6 4
39 39 H 1.08999 * 109.49354 * 298.56714 * 10 8 7
40 40 H 1.09006 * 109.49349 * 58.66091 * 10 8 7
41 41 H 1.09004 * 109.60051 * 294.87179 * 11 10 8
42 42 H 1.09000 * 109.70321 * 174.50117 * 11 10 8
43 43 H 1.09004 * 109.46793 * 299.99305 * 15 13 12
44 44 H 1.08996 * 109.47401 * 59.99815 * 15 13 12
45 45 H 0.96998 * 119.99527 * 180.02562 * 20 19 17
46 46 H 1.08998 * 109.59088 * 293.82450 * 25 12 11
47 47 H 1.09002 * 109.59098 * 173.39534 * 25 12 11
48 48 H 1.09000 * 109.47274 * 59.99713 * 28 26 8
49 49 H 1.09005 * 109.47192 * 180.02562 * 28 26 8
50 50 H 1.09002 * 109.47099 * 299.99872 * 28 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5469 1.4427 0.0006
5 8 4.1533 0.3924 0.0015
6 7 4.2207 2.6099 0.0013
7 6 5.6857 2.6100 0.0013
8 6 6.1957 4.0525 0.0014
9 1 5.7609 4.5912 0.8434
10 6 5.7901 4.7368 -1.3060
11 6 6.2718 6.1909 -1.2873
12 7 7.7167 6.2067 -1.0212
13 6 8.5601 6.8564 -1.8477
14 8 9.7509 6.8617 -1.6174
15 6 8.0236 7.5764 -3.0580
16 16 9.3925 8.3445 -3.9592
17 6 8.5047 9.0926 -5.2846
18 1 7.4313 8.9886 -5.3423
19 6 9.1851 9.8148 -6.2553
20 7 8.5218 10.3742 -7.2451
21 14 11.0418 9.9942 -6.1559
22 1 11.6871 8.8759 -6.8897
23 1 11.4476 11.2859 -6.7659
24 1 11.4667 9.9633 -4.7334
25 6 8.2248 5.5004 0.1627
26 6 7.7208 4.0541 0.1280
27 1 8.0102 3.5458 1.0478
28 6 8.3335 3.3285 -1.0716
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.6765 1.9564 -0.8900
35 1 1.6764 1.9564 0.8900
36 1 3.7357 3.4499 0.0009
37 1 6.0490 2.0957 0.8911
38 1 6.0491 2.0966 -0.8889
39 1 6.2449 4.2133 -2.1469
40 1 4.7050 4.7146 -1.4068
41 1 5.7498 6.7390 -0.5030
42 1 6.0730 6.6563 -2.2528
43 1 7.5142 6.8647 -3.7079
44 1 7.3205 8.3464 -2.7407
45 1 8.9973 10.8785 -7.9236
46 1 7.8620 5.9921 1.0653
47 1 9.3147 5.5078 0.1530
48 1 8.0448 3.8383 -1.9908
49 1 9.4197 3.3294 -0.9808
50 1 7.9723 2.3004 -1.0975
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001340840414.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:29
Heat of formation + Delta-G solvation = -98.402377 kcal
Electronic energy + Delta-G solvation = -27671.661331 eV
Core-core repulsion = 23824.040323 eV
Total energy + Delta-G solvation = -3847.621008 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.38 seconds
Orbital eigenvalues (eV)
-40.67172 -39.87320 -38.05656 -35.39121 -34.70330 -33.65265 -32.45793 -31.86357
-29.68914 -29.05829 -27.39214 -26.45045 -25.60199 -23.64946 -23.10635 -21.99959
-20.71216 -20.20128 -18.62791 -17.80597 -17.37049 -16.73450 -16.50375 -16.33126
-15.66752 -15.65056 -15.20630 -14.96817 -14.72286 -14.52900 -14.11949 -13.87525
-13.84724 -13.62270 -13.39515 -13.27148 -12.95564 -12.87641 -12.80031 -12.36855
-12.18073 -12.10052 -11.91927 -11.74374 -11.61103 -11.40485 -11.27110 -11.16503
-11.06762 -11.02237 -10.80665 -10.67830 -10.59845 -10.13492 -9.87497 -9.47798
-9.40582 -9.02281 -8.61338 -8.50961 -6.94087 -6.30973 -4.02735 2.31913
2.68649 2.81562 2.91354 3.17914 3.31863 3.49090 3.57044 4.22439
4.31125 4.31505 4.36036 4.37498 4.46905 4.56768 4.64874 4.77010
4.90431 4.94469 4.99279 5.04847 5.06437 5.08233 5.12085 5.17762
5.24953 5.27213 5.33507 5.41430 5.52321 5.55640 5.57191 5.63883
5.64172 5.67048 5.72771 5.73076 5.86179 5.88788 5.90483 5.92536
5.95826 6.10853 6.23029 6.54577 7.11649 7.43922 7.88464 7.92008
8.38988 8.42131 9.15339 10.78184
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017620 B = 0.002054 C = 0.001909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.694325 B =13625.428745 C =14664.746189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.110 4.110
3 C -0.142 4.142
4 C 0.510 3.490
5 O -0.542 6.542
6 N -0.732 5.732
7 C 0.123 3.877
8 C -0.093 4.093
9 H 0.079 0.921
10 C -0.134 4.134
11 C 0.107 3.893
12 N -0.616 5.616
13 C 0.534 3.466
14 O -0.518 6.518
15 C -0.122 4.122
16 S -0.143 6.143
17 C -0.521 4.521
18 H 0.088 0.912
19 C 0.096 3.904
20 N -0.880 5.880
21 Si 0.857 3.143
22 H -0.267 1.267
23 H -0.274 1.274
24 H -0.235 1.235
25 C 0.118 3.882
26 C -0.096 4.096
27 H 0.083 0.917
28 C -0.151 4.151
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.055 0.945
32 H 0.069 0.931
33 H 0.068 0.932
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.400 0.600
37 H 0.067 0.933
38 H 0.072 0.928
39 H 0.077 0.923
40 H 0.073 0.927
41 H 0.068 0.932
42 H 0.091 0.909
43 H 0.095 0.905
44 H 0.096 0.904
45 H 0.271 0.729
46 H 0.064 0.936
47 H 0.095 0.905
48 H 0.062 0.938
49 H 0.058 0.942
50 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.773 -16.437 18.363 28.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.148 4.148
3 C -0.182 4.182
4 C 0.296 3.704
5 O -0.418 6.418
6 N -0.384 5.384
7 C -0.001 4.001
8 C -0.112 4.112
9 H 0.097 0.903
10 C -0.172 4.172
11 C -0.016 4.016
12 N -0.352 5.352
13 C 0.322 3.678
14 O -0.393 6.393
15 C -0.272 4.272
16 S 0.084 5.916
17 C -0.669 4.669
18 H 0.106 0.894
19 C -0.113 4.113
20 N -0.516 5.516
21 Si 0.681 3.319
22 H -0.192 1.192
23 H -0.199 1.199
24 H -0.159 1.159
25 C -0.005 4.005
26 C -0.116 4.116
27 H 0.101 0.899
28 C -0.208 4.208
29 H 0.076 0.924
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.112 0.888
35 H 0.111 0.889
36 H 0.235 0.765
37 H 0.085 0.915
38 H 0.090 0.910
39 H 0.096 0.904
40 H 0.092 0.908
41 H 0.086 0.914
42 H 0.110 0.890
43 H 0.113 0.887
44 H 0.114 0.886
45 H 0.081 0.919
46 H 0.082 0.918
47 H 0.114 0.886
48 H 0.081 0.919
49 H 0.077 0.923
50 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -12.545 -17.067 18.529 28.143
hybrid contribution -1.035 0.701 -0.527 1.357
sum -13.581 -16.367 18.003 27.864
Atomic orbital electron populations
1.21797 0.95411 1.02052 1.01824 1.21280 0.95318 0.94625 1.03575
1.21737 0.91648 1.00347 1.04436 1.20804 0.90413 0.83533 0.75629
1.90717 1.70607 1.31363 1.49149 1.46098 1.07595 1.08743 1.75961
1.21480 0.79245 0.96714 1.02629 1.21398 0.96237 0.94855 0.98716
0.90267 1.22065 1.01002 0.96042 0.98123 1.21724 0.80614 0.96514
1.02748 1.48019 1.07115 1.53615 1.26427 1.20280 0.86188 0.78073
0.83286 1.90690 1.15393 1.60042 1.73161 1.23308 1.04289 1.02357
0.97255 1.84811 1.10815 1.66371 1.29623 1.22302 0.96852 1.38099
1.09623 0.89428 1.24714 0.98977 0.93702 0.93905 1.69937 1.36412
1.33046 1.12254 0.86736 0.85168 0.78521 0.81438 1.19211 1.19933
1.15935 1.21565 1.01231 0.90428 0.87249 1.21443 0.93651 0.96494
0.99994 0.89883 1.21913 1.01020 0.99714 0.98143 0.92369 0.92692
0.92594 0.91212 0.91302 0.88808 0.88938 0.76527 0.91456 0.90987
0.90433 0.90845 0.91382 0.89026 0.88652 0.88593 0.91937 0.91778
0.88640 0.91932 0.92296 0.92525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16
2 C -0.11 -0.70 5.22 -26.73 -0.14 -0.84 16
3 C -0.14 -0.74 5.70 -27.88 -0.16 -0.90 16
4 C 0.51 4.30 7.83 -10.99 -0.09 4.22 16
5 O -0.54 -6.97 15.98 5.56 0.09 -6.88 16
6 N -0.73 -4.65 5.27 -60.29 -0.32 -4.96 16
7 C 0.12 0.91 4.60 -4.04 -0.02 0.89 16
8 C -0.09 -0.61 1.96 -90.58 -0.18 -0.79 16
9 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16
10 C -0.13 -0.96 4.90 -26.61 -0.13 -1.09 16
11 C 0.11 0.97 6.34 -3.71 -0.02 0.95 16
12 N -0.62 -7.61 2.41 -172.76 -0.42 -8.03 16
13 C 0.53 9.28 7.72 -10.99 -0.08 9.19 16
14 O -0.52 -10.95 15.28 5.55 0.08 -10.87 16
15 C -0.12 -2.30 4.50 36.00 0.16 -2.14 16
16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16
17 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16
18 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16
19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16
20 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16
21 Si 0.86 21.68 27.74 -169.99 -4.71 16.96 16
22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16
23 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16
24 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16
25 C 0.12 1.23 5.83 -3.71 -0.02 1.21 16
26 C -0.10 -0.78 2.72 -90.50 -0.25 -1.03 16
27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
28 C -0.15 -1.49 8.38 37.15 0.31 -1.18 16
29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16
31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16
32 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16
33 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16
34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16
35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16
36 H 0.40 1.49 7.65 -40.82 -0.31 1.18 16
37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.07 0.66 6.74 -51.93 -0.35 0.31 16
39 H 0.08 0.69 6.33 -51.93 -0.33 0.36 16
40 H 0.07 0.38 7.15 -51.93 -0.37 0.01 16
41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16
43 H 0.10 1.68 7.69 -51.91 -0.40 1.28 16
44 H 0.10 1.69 7.94 -51.92 -0.41 1.28 16
45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
47 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16
48 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16
49 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
50 H 0.06 0.51 6.58 -51.93 -0.34 0.16 16
LS Contribution 402.40 15.07 6.06 6.06
Total: -1.00 -35.62 402.40 -9.03 -44.64
By element:
Atomic # 1 Polarization: 6.43 SS G_CDS: -8.57 Total: -2.13 kcal
Atomic # 6 Polarization: -3.65 SS G_CDS: -0.03 Total: -3.68 kcal
Atomic # 7 Polarization: -38.57 SS G_CDS: 0.04 Total: -38.53 kcal
Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal
Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -35.62 -9.03 -44.64 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340840414.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.759 kcal
(2) G-P(sol) polarization free energy of solvation -35.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.376 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds