Wall clock time and date at job start Sat Apr 11 2020 06:41:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53006 * 109.46626 * 2 1
4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1
5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2
6 6 N 1.34779 * 120.00037 * 180.02562 * 4 3 2
7 7 C 1.46500 * 120.00169 * 180.02562 * 6 4 3
8 8 C 1.52996 * 109.47364 * 179.97438 * 7 6 4
9 9 H 1.09007 * 109.45560 * 55.00174 * 8 7 6
10 10 C 1.53042 * 109.46339 * 295.02955 * 8 7 6
11 11 C 1.53189 * 109.31379 * 178.59416 * 10 8 7
12 12 N 1.46931 * 108.75974 * 54.65632 * 11 10 8
13 13 C 1.34779 * 120.62660 * 126.36041 * 12 11 10
14 14 O 1.21286 * 120.00052 * 180.02562 * 13 12 11
15 15 C 1.50697 * 120.00192 * 0.02562 * 13 12 11
16 16 S 1.81002 * 109.47302 * 179.97438 * 15 13 12
17 17 C 1.76195 * 100.00030 * 179.97438 * 16 15 13
18 18 H 1.07995 * 120.00477 * 359.97438 * 17 16 15
19 19 C 1.38808 * 119.99791 * 180.02562 * 17 16 15
20 20 N 1.31631 * 119.99775 * 180.02562 * 19 17 16
21 21 Si 1.86801 * 119.99796 * 359.97438 * 19 17 16
22 22 H 1.48504 * 109.46936 * 90.00441 * 21 19 17
23 23 H 1.48501 * 109.46711 * 209.99778 * 21 19 17
24 24 H 1.48493 * 109.47420 * 330.00101 * 21 19 17
25 25 C 1.46921 * 118.74119 * 306.37936 * 12 11 10
26 26 C 1.53039 * 109.45998 * 174.97087 * 8 7 6
27 27 H 1.08997 * 109.50191 * 301.34022 * 26 8 7
28 28 C 1.52994 * 109.49623 * 61.44117 * 26 8 7
29 29 H 1.09002 * 109.46719 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47839 * 299.99931 * 1 2 3
31 31 H 1.09000 * 109.47160 * 60.00369 * 1 2 3
32 32 H 1.08993 * 109.47839 * 240.00069 * 2 1 3
33 33 H 1.09000 * 109.47160 * 119.99631 * 2 1 3
34 34 H 1.09000 * 109.47050 * 299.99699 * 3 2 1
35 35 H 1.09001 * 109.46801 * 59.99811 * 3 2 1
36 36 H 0.96996 * 119.99844 * 359.97438 * 6 4 3
37 37 H 1.09004 * 109.46923 * 300.00119 * 7 6 4
38 38 H 1.09004 * 109.47042 * 59.99705 * 7 6 4
39 39 H 1.08999 * 109.49354 * 298.56714 * 10 8 7
40 40 H 1.09006 * 109.49349 * 58.66091 * 10 8 7
41 41 H 1.09004 * 109.60051 * 294.87179 * 11 10 8
42 42 H 1.09000 * 109.70321 * 174.50117 * 11 10 8
43 43 H 1.09004 * 109.46793 * 299.99305 * 15 13 12
44 44 H 1.08996 * 109.47401 * 59.99815 * 15 13 12
45 45 H 0.96998 * 119.99527 * 180.02562 * 20 19 17
46 46 H 1.08998 * 109.59088 * 293.82450 * 25 12 11
47 47 H 1.09002 * 109.59098 * 173.39534 * 25 12 11
48 48 H 1.09000 * 109.47274 * 59.99713 * 28 26 8
49 49 H 1.09005 * 109.47192 * 180.02562 * 28 26 8
50 50 H 1.09002 * 109.47099 * 299.99872 * 28 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5469 1.4427 0.0006
5 8 4.1533 0.3924 0.0015
6 7 4.2207 2.6099 0.0013
7 6 5.6857 2.6100 0.0013
8 6 6.1957 4.0525 0.0014
9 1 5.7609 4.5912 0.8434
10 6 5.7901 4.7368 -1.3060
11 6 6.2718 6.1909 -1.2873
12 7 7.7167 6.2067 -1.0212
13 6 8.5601 6.8564 -1.8477
14 8 9.7509 6.8617 -1.6174
15 6 8.0236 7.5764 -3.0580
16 16 9.3925 8.3445 -3.9592
17 6 8.5047 9.0926 -5.2846
18 1 7.4313 8.9886 -5.3423
19 6 9.1851 9.8148 -6.2553
20 7 8.5218 10.3742 -7.2451
21 14 11.0418 9.9942 -6.1559
22 1 11.6871 8.8759 -6.8897
23 1 11.4476 11.2859 -6.7659
24 1 11.4667 9.9633 -4.7334
25 6 8.2248 5.5004 0.1627
26 6 7.7208 4.0541 0.1280
27 1 8.0102 3.5458 1.0478
28 6 8.3335 3.3285 -1.0716
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.6765 1.9564 -0.8900
35 1 1.6764 1.9564 0.8900
36 1 3.7357 3.4499 0.0009
37 1 6.0490 2.0957 0.8911
38 1 6.0491 2.0966 -0.8889
39 1 6.2449 4.2133 -2.1469
40 1 4.7050 4.7146 -1.4068
41 1 5.7498 6.7390 -0.5030
42 1 6.0730 6.6563 -2.2528
43 1 7.5142 6.8647 -3.7079
44 1 7.3205 8.3464 -2.7407
45 1 8.9973 10.8785 -7.9236
46 1 7.8620 5.9921 1.0653
47 1 9.3147 5.5078 0.1530
48 1 8.0448 3.8383 -1.9908
49 1 9.4197 3.3294 -0.9808
50 1 7.9723 2.3004 -1.0975
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001340840414.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:41:27
Heat of formation + Delta-G solvation = -121.969413 kcal
Electronic energy + Delta-G solvation = -27672.683275 eV
Core-core repulsion = 23824.040323 eV
Total energy + Delta-G solvation = -3848.642951 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.56117 -40.67281 -39.11279 -36.20562 -35.22656 -34.68020 -34.53099 -32.61331
-31.04314 -29.67053 -28.03059 -27.89610 -27.26184 -24.42252 -23.79407 -22.55378
-21.40781 -21.19163 -19.85476 -19.26917 -18.32424 -17.76179 -17.20005 -17.15081
-16.92704 -16.73607 -16.71449 -15.97098 -15.62920 -15.39431 -15.30574 -14.95304
-14.84345 -14.65802 -14.48549 -14.20378 -13.92552 -13.82234 -13.63588 -13.40549
-13.34194 -13.02990 -12.85454 -12.76330 -12.72689 -12.64488 -12.38688 -12.12641
-12.01039 -11.87537 -11.80377 -11.61255 -11.48764 -11.42458 -11.17872 -10.84573
-10.81839 -10.51202 -10.03058 -9.64019 -9.00455 -8.52141 -6.22737 0.97884
1.30364 1.45726 1.53745 1.55827 1.70156 2.10225 2.24261 2.28293
2.68711 2.86183 3.49426 3.65526 3.67629 3.80179 3.89764 4.02446
4.06974 4.14476 4.18275 4.21211 4.26687 4.40683 4.41838 4.55842
4.57375 4.64421 4.71440 4.73837 4.75769 4.80499 4.85236 4.86672
4.90988 4.95156 4.98757 5.14137 5.16505 5.19738 5.26038 5.29572
5.45147 5.47540 5.54210 5.61639 5.70362 6.10751 6.29304 6.61558
6.93350 7.12559 7.32830 8.60054
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017620 B = 0.002054 C = 0.001909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1588.694325 B =13625.428745 C =14664.746189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.112 4.112
3 C -0.134 4.134
4 C 0.503 3.497
5 O -0.594 6.594
6 N -0.717 5.717
7 C 0.128 3.872
8 C -0.080 4.080
9 H 0.107 0.893
10 C -0.130 4.130
11 C 0.099 3.901
12 N -0.601 5.601
13 C 0.533 3.467
14 O -0.565 6.565
15 C -0.105 4.105
16 S -0.180 6.180
17 C -0.527 4.527
18 H 0.064 0.936
19 C 0.047 3.953
20 N -0.915 5.915
21 Si 0.913 3.087
22 H -0.264 1.264
23 H -0.258 1.258
24 H -0.238 1.238
25 C 0.115 3.885
26 C -0.089 4.089
27 H 0.103 0.897
28 C -0.149 4.149
29 H 0.054 0.946
30 H 0.066 0.934
31 H 0.063 0.937
32 H 0.048 0.952
33 H 0.052 0.948
34 H 0.115 0.885
35 H 0.119 0.881
36 H 0.417 0.583
37 H 0.062 0.938
38 H 0.051 0.949
39 H 0.057 0.943
40 H 0.102 0.898
41 H 0.100 0.900
42 H 0.084 0.916
43 H 0.107 0.893
44 H 0.112 0.888
45 H 0.277 0.723
46 H 0.093 0.907
47 H 0.069 0.931
48 H 0.042 0.958
49 H 0.042 0.958
50 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.693 -16.300 20.441 31.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.150 4.150
3 C -0.174 4.174
4 C 0.292 3.708
5 O -0.475 6.475
6 N -0.370 5.370
7 C 0.004 3.996
8 C -0.098 4.098
9 H 0.125 0.875
10 C -0.168 4.168
11 C -0.023 4.023
12 N -0.335 5.335
13 C 0.320 3.680
14 O -0.444 6.444
15 C -0.256 4.256
16 S 0.047 5.953
17 C -0.674 4.674
18 H 0.082 0.918
19 C -0.159 4.159
20 N -0.553 5.553
21 Si 0.735 3.265
22 H -0.189 1.189
23 H -0.183 1.183
24 H -0.162 1.162
25 C -0.007 4.007
26 C -0.109 4.109
27 H 0.121 0.879
28 C -0.206 4.206
29 H 0.073 0.927
30 H 0.085 0.915
31 H 0.082 0.918
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.133 0.867
35 H 0.137 0.863
36 H 0.255 0.745
37 H 0.080 0.920
38 H 0.070 0.930
39 H 0.076 0.924
40 H 0.121 0.879
41 H 0.118 0.882
42 H 0.102 0.898
43 H 0.126 0.874
44 H 0.130 0.870
45 H 0.086 0.914
46 H 0.111 0.889
47 H 0.088 0.912
48 H 0.061 0.939
49 H 0.061 0.939
50 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -14.532 -16.911 20.627 30.375
hybrid contribution -0.577 0.554 -1.096 1.357
sum -15.109 -16.357 19.531 29.620
Atomic orbital electron populations
1.21762 0.93839 1.02238 1.02765 1.21259 0.96618 0.95327 1.01793
1.21767 0.89090 0.99857 1.06669 1.21423 0.91755 0.83120 0.74528
1.90700 1.71817 1.33305 1.51685 1.45973 1.07168 1.09100 1.74770
1.21324 0.79930 0.96915 1.01447 1.21304 0.94747 0.94416 0.99355
0.87464 1.22044 1.02597 0.94385 0.97741 1.22059 0.78406 0.98212
1.03606 1.48034 1.08156 1.51640 1.25639 1.19979 0.85995 0.78593
0.83403 1.90674 1.17267 1.62202 1.74284 1.23274 1.01846 1.02825
0.97645 1.84758 1.14212 1.66988 1.29371 1.22437 0.96076 1.38081
1.10830 0.91827 1.25536 1.03120 0.93549 0.93694 1.70010 1.38199
1.34002 1.13114 0.85892 0.80187 0.79140 0.81301 1.18878 1.18270
1.16177 1.21755 1.00007 0.91798 0.87106 1.21414 0.94845 0.94731
0.99875 0.87904 1.21881 1.00158 1.00294 0.98275 0.92686 0.91502
0.91791 0.93308 0.92950 0.86665 0.86271 0.74522 0.92006 0.93040
0.92439 0.87921 0.88174 0.89758 0.87440 0.86973 0.91382 0.88933
0.91239 0.93865 0.93897 0.91812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.91 71.98 0.71 -0.38 16
2 C -0.11 -1.32 5.22 30.60 0.16 -1.16 16
3 C -0.13 -1.05 5.70 29.85 0.17 -0.88 16
4 C 0.50 7.60 7.83 87.66 0.69 8.28 16
5 O -0.59 -15.25 15.98 -3.04 -0.05 -15.30 16
6 N -0.72 -6.91 5.27 -463.05 -2.44 -9.35 16
7 C 0.13 1.59 4.60 86.38 0.40 1.99 16
8 C -0.08 -0.75 1.96 -10.77 -0.02 -0.77 16
9 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16
10 C -0.13 -1.43 4.90 30.67 0.15 -1.27 16
11 C 0.10 1.45 6.34 86.36 0.55 2.00 16
12 N -0.60 -13.68 2.41 -818.89 -1.97 -15.65 16
13 C 0.53 18.21 7.72 87.66 0.68 18.89 16
14 O -0.57 -24.16 15.28 -3.05 -0.05 -24.21 16
15 C -0.11 -3.92 4.50 71.23 0.32 -3.60 16
16 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16
17 C -0.53 -30.43 10.04 67.96 0.68 -29.75 16
18 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16
19 C 0.05 2.72 5.50 84.86 0.47 3.19 16
20 N -0.92 -55.33 13.97 21.65 0.30 -55.03 16
21 Si 0.91 45.03 27.74 68.60 1.90 46.93 16
22 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16
23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16
24 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16
25 C 0.12 2.16 5.83 86.37 0.50 2.66 16
26 C -0.09 -1.24 2.72 -10.72 -0.03 -1.27 16
27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16
28 C -0.15 -2.89 8.38 71.98 0.60 -2.29 16
29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16
31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16
33 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16
34 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16
35 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16
36 H 0.42 1.17 7.65 -92.71 -0.71 0.46 16
37 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16
38 H 0.05 0.88 6.74 -2.38 -0.02 0.87 16
39 H 0.06 0.92 6.33 -2.39 -0.02 0.90 16
40 H 0.10 0.59 7.15 -2.38 -0.02 0.57 16
41 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16
42 H 0.08 1.41 5.93 -2.39 -0.01 1.40 16
43 H 0.11 3.74 7.69 -2.39 -0.02 3.72 16
44 H 0.11 3.81 7.94 -2.40 -0.02 3.79 16
45 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16
46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
47 H 0.07 1.72 7.01 -2.39 -0.02 1.71 16
48 H 0.04 1.00 5.97 -2.39 -0.01 0.99 16
49 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16
50 H 0.06 1.13 6.58 -2.39 -0.02 1.11 16
Total: -1.00 -81.31 402.40 2.86 -78.45
By element:
Atomic # 1 Polarization: 8.48 SS G_CDS: 0.18 Total: 8.66 kcal
Atomic # 6 Polarization: -10.39 SS G_CDS: 6.03 Total: -4.37 kcal
Atomic # 7 Polarization: -75.92 SS G_CDS: -4.11 Total: -80.03 kcal
Atomic # 8 Polarization: -39.41 SS G_CDS: -0.10 Total: -39.51 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal
Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal
Total: -81.31 2.86 -78.45 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001340840414.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.517 kcal
(2) G-P(sol) polarization free energy of solvation -81.312 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds