Wall clock time and date at job start Sat Apr 11 2020 06:39:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52996 * 109.47291 * 2 1
4 4 C 1.52993 * 109.47327 * 180.02562 * 3 2 1
5 5 H 1.09002 * 109.47634 * 305.00105 * 4 3 2
6 6 C 1.53009 * 109.47179 * 64.99835 * 4 3 2
7 7 C 1.53003 * 109.47097 * 185.58500 * 6 4 3
8 8 C 1.50700 * 109.47268 * 184.99737 * 4 3 2
9 9 O 1.21283 * 119.99996 * 269.49488 * 8 4 3
10 10 N 1.34777 * 120.00064 * 89.49868 * 8 4 3
11 11 C 1.46498 * 120.00205 * 184.86746 * 10 8 4
12 12 H 1.08998 * 112.84807 * 333.13901 * 11 10 8
13 13 C 1.53778 * 113.61301 * 104.44726 * 11 10 8
14 14 C 1.53771 * 87.08633 * 89.11449 * 13 11 10
15 15 H 1.08999 * 113.61597 * 139.98125 * 14 13 11
16 16 N 1.46496 * 113.69151 * 270.87334 * 14 13 11
17 17 C 1.34777 * 120.00123 * 180.23976 * 16 14 13
18 18 O 1.21276 * 120.00146 * 0.02562 * 17 16 14
19 19 C 1.50701 * 119.99982 * 180.02562 * 17 16 14
20 20 S 1.81008 * 109.46922 * 180.02562 * 19 17 16
21 21 C 1.76203 * 99.99755 * 179.97438 * 20 19 17
22 22 H 1.08002 * 120.00054 * 359.97438 * 21 20 19
23 23 C 1.38801 * 120.00010 * 180.02562 * 21 20 19
24 24 N 1.31626 * 119.99994 * 180.02562 * 23 21 20
25 25 Si 1.86805 * 119.99677 * 359.97438 * 23 21 20
26 26 H 1.48497 * 109.46918 * 90.00503 * 25 23 21
27 27 H 1.48503 * 109.46726 * 210.00288 * 25 23 21
28 28 H 1.48500 * 109.47387 * 330.00358 * 25 23 21
29 29 C 1.53776 * 113.61368 * 201.94008 * 11 10 8
30 30 H 1.08988 * 109.47498 * 59.99822 * 1 2 3
31 31 H 1.09006 * 109.47040 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.46367 * 299.99898 * 1 2 3
33 33 H 1.09000 * 109.46760 * 240.00238 * 2 1 3
34 34 H 1.09001 * 109.47303 * 120.00390 * 2 1 3
35 35 H 1.09005 * 109.46776 * 300.00372 * 3 2 1
36 36 H 1.09004 * 109.47212 * 59.99925 * 3 2 1
37 37 H 1.08999 * 109.46621 * 305.58717 * 6 4 3
38 38 H 1.08997 * 109.46635 * 65.58437 * 6 4 3
39 39 H 1.09000 * 109.46813 * 304.31811 * 7 6 4
40 40 H 1.09005 * 109.47036 * 64.31645 * 7 6 4
41 41 H 1.08993 * 109.46854 * 184.31545 * 7 6 4
42 42 H 0.97001 * 119.99628 * 4.86655 * 10 8 4
43 43 H 1.09009 * 113.61144 * 203.67108 * 13 11 10
44 44 H 1.09003 * 113.61474 * 334.55800 * 13 11 10
45 45 H 0.97003 * 119.99998 * 0.23976 * 16 14 13
46 46 H 1.09005 * 109.46824 * 299.99982 * 19 17 16
47 47 H 1.08991 * 109.47640 * 59.99679 * 19 17 16
48 48 H 0.96999 * 119.99424 * 180.02562 * 24 23 21
49 49 H 1.09000 * 113.61800 * 25.43634 * 29 11 10
50 50 H 1.09004 * 113.61605 * 156.33135 * 29 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 3.5700 1.4425 -0.0006
5 1 3.9338 0.8529 0.8409
6 6 4.0795 0.8330 -1.3084
7 6 5.6031 0.7048 -1.2517
8 6 4.0724 2.8578 0.1231
9 8 4.2829 3.5160 -0.8736
10 7 4.2879 3.3923 1.3415
11 6 4.6735 4.8001 1.4660
12 1 5.1932 5.1762 0.5848
13 6 3.5315 5.7114 1.9457
14 6 3.9930 5.4030 3.3798
15 1 3.9627 6.2670 4.0436
16 7 3.3583 4.2171 3.9601
17 6 3.6672 3.8332 5.2146
18 8 4.4702 4.4698 5.8632
19 6 3.0146 2.6130 5.8115
20 16 3.6310 2.3615 7.4947
21 6 2.7288 0.9143 7.9378
22 1 2.0441 0.4676 7.2321
23 6 2.8972 0.3491 9.1943
24 7 2.2235 -0.7322 9.5252
25 14 4.0809 1.1223 10.4152
26 1 3.3586 2.1262 11.2371
27 1 4.6389 0.0677 11.2993
28 1 5.1862 1.7875 9.6796
29 6 5.3860 5.1290 2.7885
30 1 -0.3634 0.5138 -0.8898
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3632 0.5139 0.8901
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5139 0.8899
35 1 1.6767 1.9563 -0.8900
36 1 1.6767 1.9563 0.8900
37 1 3.6367 -0.1535 -1.4461
38 1 3.7997 1.4766 -2.1423
39 1 6.0419 1.6792 -1.0375
40 1 5.8796 0.0012 -0.4664
41 1 5.9731 0.3426 -2.2108
42 1 4.1877 2.8448 2.1359
43 1 3.6579 6.7562 1.6615
44 1 2.5386 5.3260 1.7141
45 1 2.7157 3.7081 3.4416
46 1 1.9342 2.7550 5.8380
47 1 3.2514 1.7401 5.2032
48 1 2.3410 -1.1270 10.4034
49 1 5.8903 4.2733 3.2374
50 1 6.0195 6.0145 2.7348
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001353716929.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:29
Heat of formation + Delta-G solvation = -81.409293 kcal
Electronic energy + Delta-G solvation = -28153.272900 eV
Core-core repulsion = 24306.388768 eV
Total energy + Delta-G solvation = -3846.884133 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.98660 -39.69060 -38.13589 -36.41368 -33.89918 -33.27213 -32.79310 -32.48383
-29.60190 -29.21843 -26.09016 -25.70795 -25.44838 -24.19473 -22.91007 -21.57988
-20.67299 -20.17093 -19.63784 -17.93851 -17.61068 -16.54559 -16.32818 -15.92462
-15.77788 -15.50375 -15.33639 -15.01616 -14.77832 -14.57918 -14.07053 -14.02758
-13.71810 -13.49733 -13.42946 -13.05465 -12.86029 -12.79000 -12.65459 -12.34818
-12.19778 -12.11002 -11.98987 -11.64715 -11.41057 -11.31578 -11.18191 -11.08934
-11.04964 -11.02727 -10.74539 -10.70759 -10.58525 -9.90612 -9.89838 -9.61494
-9.35041 -9.07325 -9.02270 -8.56231 -6.97748 -6.33638 -4.05972 2.37180
2.64297 2.81122 2.89758 3.23754 3.29929 3.46319 3.57633 4.13970
4.23134 4.28486 4.31969 4.40945 4.54004 4.56995 4.68777 4.80621
4.85199 4.88754 4.94827 5.05611 5.10000 5.18544 5.19596 5.33360
5.37412 5.41724 5.44278 5.46347 5.53110 5.55249 5.60150 5.62325
5.65520 5.75547 5.76206 5.80584 5.85100 5.91328 5.91489 5.94671
6.03672 6.04455 6.24351 6.52874 7.23201 7.47329 7.89292 7.98030
8.36394 8.38102 9.12536 10.75531
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.009946 B = 0.002952 C = 0.002504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2814.462569 B = 9482.451744 C =11179.444108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.125 4.125
3 C -0.107 4.107
4 C -0.109 4.109
5 H 0.092 0.908
6 C -0.109 4.109
7 C -0.155 4.155
8 C 0.524 3.476
9 O -0.538 6.538
10 N -0.715 5.715
11 C 0.119 3.881
12 H 0.103 0.897
13 C -0.154 4.154
14 C 0.126 3.874
15 H 0.093 0.907
16 N -0.724 5.724
17 C 0.531 3.469
18 O -0.511 6.511
19 C -0.126 4.126
20 S -0.139 6.139
21 C -0.523 4.523
22 H 0.088 0.912
23 C 0.096 3.904
24 N -0.879 5.879
25 Si 0.856 3.144
26 H -0.267 1.267
27 H -0.274 1.274
28 H -0.235 1.235
29 C -0.156 4.156
30 H 0.053 0.947
31 H 0.055 0.945
32 H 0.056 0.944
33 H 0.066 0.934
34 H 0.067 0.933
35 H 0.070 0.930
36 H 0.067 0.933
37 H 0.073 0.927
38 H 0.074 0.926
39 H 0.055 0.945
40 H 0.053 0.947
41 H 0.056 0.944
42 H 0.402 0.598
43 H 0.105 0.895
44 H 0.076 0.924
45 H 0.397 0.603
46 H 0.097 0.903
47 H 0.096 0.904
48 H 0.271 0.729
49 H 0.080 0.920
50 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.834 6.236 -22.547 23.408
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.163 4.163
3 C -0.145 4.145
4 C -0.131 4.131
5 H 0.110 0.890
6 C -0.147 4.147
7 C -0.213 4.213
8 C 0.310 3.690
9 O -0.414 6.414
10 N -0.367 5.367
11 C 0.013 3.987
12 H 0.121 0.879
13 C -0.193 4.193
14 C 0.020 3.980
15 H 0.111 0.889
16 N -0.379 5.379
17 C 0.317 3.683
18 O -0.385 6.385
19 C -0.276 4.276
20 S 0.087 5.913
21 C -0.670 4.670
22 H 0.106 0.894
23 C -0.112 4.112
24 N -0.516 5.516
25 Si 0.681 3.319
26 H -0.192 1.192
27 H -0.199 1.199
28 H -0.159 1.159
29 C -0.195 4.195
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.088 0.912
36 H 0.086 0.914
37 H 0.092 0.908
38 H 0.093 0.907
39 H 0.074 0.926
40 H 0.072 0.928
41 H 0.075 0.925
42 H 0.238 0.762
43 H 0.123 0.877
44 H 0.095 0.905
45 H 0.232 0.768
46 H 0.115 0.885
47 H 0.115 0.885
48 H 0.081 0.919
49 H 0.098 0.902
50 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 2.277 7.636 -22.036 23.433
hybrid contribution -0.954 -1.138 0.214 1.501
sum 1.323 6.498 -21.822 22.807
Atomic orbital electron populations
1.21773 0.95561 1.01885 1.01903 1.21593 0.96131 0.95962 1.02593
1.21538 0.91977 0.98103 1.02916 1.21461 0.97406 0.93051 1.01165
0.89026 1.21473 0.96111 1.00967 0.96112 1.21812 0.95770 1.01907
1.01785 1.20714 0.76416 0.88973 0.82857 1.90678 1.51029 1.63059
1.36656 1.45921 1.70556 1.11431 1.08781 1.21904 0.96181 0.81386
0.99231 0.87890 1.23726 0.99668 1.01267 0.94616 1.21801 0.93121
0.89004 0.94069 0.88884 1.45842 1.46592 1.29870 1.15636 1.20318
0.81738 0.85688 0.80540 1.90713 1.33197 1.54621 1.59928 1.23295
1.03883 0.97679 1.02772 1.84828 1.59065 1.38027 1.09379 1.22304
1.29149 1.11344 1.04226 0.89381 1.24706 0.95211 0.94030 0.97291
1.69934 1.40278 1.19740 1.21629 0.86747 0.82963 0.79954 0.82257
1.19197 1.19907 1.15934 1.23722 0.97407 1.03407 0.94945 0.92837
0.92547 0.92506 0.91522 0.91462 0.91161 0.91448 0.90817 0.90700
0.92606 0.92762 0.92496 0.76221 0.87662 0.90491 0.76797 0.88462
0.88541 0.91900 0.90153 0.87840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16
2 C -0.13 -0.85 5.70 -26.73 -0.15 -1.00 16
3 C -0.11 -0.78 4.66 -26.74 -0.12 -0.90 16
4 C -0.11 -0.87 2.18 -91.77 -0.20 -1.07 16
5 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
6 C -0.11 -0.88 5.00 -26.73 -0.13 -1.01 16
7 C -0.16 -1.31 9.78 37.16 0.36 -0.94 16
8 C 0.52 5.27 5.98 -10.99 -0.07 5.21 16
9 O -0.54 -7.17 15.27 5.55 0.08 -7.09 16
10 N -0.71 -6.32 4.99 -53.02 -0.26 -6.59 16
11 C 0.12 1.05 4.31 -67.12 -0.29 0.76 16
12 H 0.10 1.01 7.49 -51.93 -0.39 0.62 16
13 C -0.15 -1.19 7.58 -25.93 -0.20 -1.38 16
14 C 0.13 1.25 3.97 -67.12 -0.27 0.98 16
15 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16
16 N -0.72 -8.00 4.27 -53.02 -0.23 -8.22 16
17 C 0.53 8.52 7.85 -10.98 -0.09 8.43 16
18 O -0.51 -10.22 15.83 5.56 0.09 -10.14 16
19 C -0.13 -2.23 6.16 36.01 0.22 -2.01 16
20 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16
21 C -0.52 -14.58 10.04 30.94 0.31 -14.27 16
22 H 0.09 2.56 8.03 -52.49 -0.42 2.13 16
23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16
24 N -0.88 -25.99 13.97 55.49 0.78 -25.22 16
25 Si 0.86 21.31 27.74 -169.99 -4.71 16.60 16
26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
28 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16
29 C -0.16 -1.46 7.61 -25.92 -0.20 -1.66 16
30 H 0.05 0.35 8.14 -51.94 -0.42 -0.08 16
31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.42 6.45 -51.93 -0.33 0.09 16
34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
37 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16
38 H 0.07 0.70 7.65 -51.93 -0.40 0.30 16
39 H 0.05 0.56 6.98 -51.93 -0.36 0.20 16
40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.40 3.29 7.24 -40.82 -0.30 3.00 16
43 H 0.11 0.66 8.14 -51.92 -0.42 0.24 16
44 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16
45 H 0.40 3.43 7.97 -40.82 -0.33 3.11 16
46 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16
47 H 0.10 1.55 8.14 -51.92 -0.42 1.12 16
48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
50 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 414.45 15.07 6.25 6.25
Total: -1.00 -33.91 414.45 -9.32 -43.23
By element:
Atomic # 1 Polarization: 12.22 SS G_CDS: -8.77 Total: 3.45 kcal
Atomic # 6 Polarization: -6.36 SS G_CDS: -0.54 Total: -6.91 kcal
Atomic # 7 Polarization: -40.31 SS G_CDS: 0.28 Total: -40.03 kcal
Atomic # 8 Polarization: -17.40 SS G_CDS: 0.17 Total: -17.22 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal
Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal
Total LS contribution 6.25 Total: 6.25 kcal
Total: -33.91 -9.32 -43.23 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001353716929.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.176 kcal
(2) G-P(sol) polarization free energy of solvation -33.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.409 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds