Wall clock time and date at job start Sat Apr 11 2020 06:39:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52993 * 109.47545 * 2 1
4 4 H 1.09006 * 109.47001 * 305.00315 * 3 2 1
5 5 C 1.52999 * 109.47197 * 64.99808 * 3 2 1
6 6 C 1.53002 * 109.47412 * 185.00280 * 3 2 1
7 7 C 1.50695 * 109.47004 * 175.00111 * 6 3 2
8 8 O 1.21274 * 120.00413 * 0.27039 * 7 6 3
9 9 N 1.34784 * 119.99635 * 179.97438 * 7 6 3
10 10 C 1.46499 * 119.99893 * 0.02562 * 9 7 6
11 11 C 1.46499 * 119.99971 * 179.97438 * 9 7 6
12 12 H 1.09007 * 110.88449 * 357.57336 * 11 9 7
13 13 C 1.55152 * 111.00579 * 233.65104 * 11 9 7
14 14 C 1.54324 * 102.94217 * 206.42124 * 13 11 9
15 15 N 1.47021 * 107.26888 * 22.19430 * 14 13 11
16 16 C 1.34782 * 125.64334 * 181.02301 * 15 14 13
17 17 O 1.21286 * 119.99387 * 180.02562 * 16 15 14
18 18 C 1.50697 * 120.00504 * 0.03603 * 16 15 14
19 19 S 1.80992 * 109.47297 * 180.02562 * 18 16 15
20 20 C 1.76208 * 100.00057 * 180.02562 * 19 18 16
21 21 H 1.08001 * 119.99899 * 359.97438 * 20 19 18
22 22 C 1.38798 * 119.99845 * 180.02562 * 20 19 18
23 23 N 1.31633 * 120.00257 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 119.99805 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.46987 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47051 * 119.99635 * 24 22 20
27 27 H 1.48500 * 109.46977 * 240.00024 * 24 22 20
28 28 C 1.47420 * 108.70438 * 1.05743 * 15 14 13
29 29 H 1.08997 * 109.47824 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47191 * 300.00024 * 1 2 3
31 31 H 1.09002 * 109.47169 * 59.99860 * 1 2 3
32 32 H 1.09003 * 109.46705 * 239.99854 * 2 1 3
33 33 H 1.08994 * 109.47271 * 120.00441 * 2 1 3
34 34 H 1.09006 * 109.46731 * 60.00342 * 5 3 2
35 35 H 1.08997 * 109.47332 * 179.97438 * 5 3 2
36 36 H 1.08996 * 109.47531 * 300.00909 * 5 3 2
37 37 H 1.09005 * 109.47089 * 54.99859 * 6 3 2
38 38 H 1.09002 * 109.46787 * 295.00201 * 6 3 2
39 39 H 1.08996 * 109.47008 * 90.00348 * 10 9 7
40 40 H 1.08997 * 109.46865 * 210.00034 * 10 9 7
41 41 H 1.08998 * 109.47058 * 329.99547 * 10 9 7
42 42 H 1.08997 * 110.71914 * 324.78693 * 13 11 9
43 43 H 1.09001 * 110.72225 * 88.05800 * 13 11 9
44 44 H 1.09001 * 109.88422 * 262.77091 * 14 13 11
45 45 H 1.09009 * 110.00940 * 141.67803 * 14 13 11
46 46 H 1.09003 * 109.47123 * 300.00403 * 18 16 15
47 47 H 1.09003 * 109.46843 * 60.00319 * 18 16 15
48 48 H 0.96998 * 119.99707 * 180.02562 * 23 22 20
49 49 H 1.09009 * 110.36538 * 217.03442 * 28 15 14
50 50 H 1.09000 * 110.36617 * 94.71249 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 1.6353 2.1265 1.3073
6 6 3.5649 1.4442 -0.1258
7 6 4.0570 2.8632 -0.2493
8 8 3.2666 3.7828 -0.2329
9 7 5.3763 3.1106 -0.3719
10 6 6.3316 2.0000 -0.3858
11 6 5.8547 4.4899 -0.4926
12 1 5.0200 5.1908 -0.5089
13 6 6.7497 4.6604 -1.7484
14 6 7.6618 5.8446 -1.3647
15 7 7.6799 5.9238 0.1032
16 6 8.3478 6.8398 0.8322
17 8 8.2912 6.8093 2.0434
18 6 9.1646 7.9019 0.1426
19 16 9.9346 8.9714 1.3832
20 6 10.8008 10.0874 0.3300
21 1 10.7436 9.9724 -0.7424
22 6 11.5574 11.1136 0.8786
23 7 11.6276 11.2534 2.1856
24 14 12.4762 12.2962 -0.2380
25 1 12.2365 11.9257 -1.6558
26 1 11.9925 13.6797 0.0012
27 1 13.9306 12.2230 0.0532
28 6 6.8472 4.8349 0.6457
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8932 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 2.0700 1.5874 2.1491
35 1 1.9991 3.1540 1.3075
36 1 0.5490 2.1252 1.3970
37 1 3.8571 0.8798 -1.0114
38 1 4.0030 0.9834 0.7596
39 1 6.4846 1.6652 -1.4117
40 1 7.2812 2.3325 0.0334
41 1 5.9397 1.1762 0.2108
42 1 7.3394 3.7612 -1.9266
43 1 6.1457 4.9061 -2.6219
44 1 7.2632 6.7697 -1.7811
45 1 8.6713 5.6744 -1.7392
46 1 9.9397 7.4295 -0.4609
47 1 8.5168 8.4983 -0.5000
48 1 12.1561 11.9708 2.5688
49 1 6.3073 5.1746 1.5297
50 1 7.4643 3.9693 0.8863
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001523073088.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:47
Heat of formation + Delta-G solvation = -80.806875 kcal
Electronic energy + Delta-G solvation = -27432.704855 eV
Core-core repulsion = 23585.846845 eV
Total energy + Delta-G solvation = -3846.858010 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.77614 -39.55079 -37.65425 -36.55906 -35.28715 -32.43402 -31.76090 -30.79357
-29.73110 -28.59592 -27.79724 -26.96022 -25.49424 -24.54732 -23.34452 -21.58509
-20.32011 -19.44566 -19.28457 -17.77713 -17.66374 -16.82919 -16.46417 -16.15313
-15.62278 -15.27200 -15.03864 -14.80923 -14.66657 -14.25492 -14.11819 -13.86714
-13.80734 -13.68912 -13.24794 -13.04972 -12.91104 -12.65453 -12.58793 -12.55098
-12.31597 -12.18358 -12.00885 -11.84362 -11.75227 -11.63982 -11.19168 -11.07673
-11.02304 -11.01639 -10.97501 -10.92635 -10.76542 -9.96636 -9.81392 -9.46712
-9.08110 -9.07033 -8.52675 -8.23771 -6.50948 -6.22165 -3.92945 2.28131
2.42543 2.97305 3.03916 3.21344 3.26457 3.31183 3.60833 4.06756
4.19017 4.26059 4.33579 4.37529 4.46712 4.60622 4.65440 4.77989
4.85027 4.91797 4.96317 5.02165 5.06182 5.08751 5.13130 5.14894
5.28219 5.30502 5.32360 5.39716 5.45565 5.48735 5.59129 5.60746
5.63875 5.69123 5.70210 5.75634 5.77617 5.85687 5.91767 6.03828
6.07757 6.12926 6.20830 6.37789 6.98625 7.58970 7.61117 7.84362
8.34998 8.51612 9.23222 10.85348
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032521 B = 0.001754 C = 0.001726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 860.785444 B =15962.425452 C =16222.820363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.120 4.120
3 C -0.077 4.077
4 H 0.078 0.922
5 C -0.156 4.156
6 C -0.135 4.135
7 C 0.515 3.485
8 O -0.531 6.531
9 N -0.608 5.608
10 C 0.071 3.929
11 C 0.127 3.873
12 H 0.118 0.882
13 C -0.140 4.140
14 C 0.104 3.896
15 N -0.625 5.625
16 C 0.550 3.450
17 O -0.514 6.514
18 C -0.146 4.146
19 S -0.061 6.061
20 C -0.535 4.535
21 H 0.073 0.927
22 C 0.074 3.926
23 N -0.867 5.867
24 Si 0.919 3.081
25 H -0.272 1.272
26 H -0.280 1.280
27 H -0.280 1.280
28 C 0.100 3.900
29 H 0.052 0.948
30 H 0.058 0.942
31 H 0.054 0.946
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.047 0.953
35 H 0.074 0.926
36 H 0.055 0.945
37 H 0.093 0.907
38 H 0.094 0.906
39 H 0.060 0.940
40 H 0.077 0.923
41 H 0.075 0.925
42 H 0.081 0.919
43 H 0.086 0.914
44 H 0.073 0.927
45 H 0.073 0.927
46 H 0.089 0.911
47 H 0.090 0.910
48 H 0.268 0.732
49 H 0.082 0.918
50 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.733 -25.748 -9.742 32.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.157 4.157
3 C -0.096 4.096
4 H 0.096 0.904
5 C -0.213 4.213
6 C -0.175 4.175
7 C 0.304 3.696
8 O -0.407 6.407
9 N -0.342 5.342
10 C -0.072 4.072
11 C 0.022 3.978
12 H 0.136 0.864
13 C -0.178 4.178
14 C -0.020 4.020
15 N -0.364 5.364
16 C 0.338 3.662
17 O -0.387 6.387
18 C -0.297 4.297
19 S 0.166 5.834
20 C -0.683 4.683
21 H 0.091 0.909
22 C -0.136 4.136
23 N -0.503 5.503
24 Si 0.745 3.255
25 H -0.196 1.196
26 H -0.205 1.205
27 H -0.206 1.206
28 C -0.024 4.024
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.066 0.934
35 H 0.093 0.907
36 H 0.074 0.926
37 H 0.111 0.889
38 H 0.112 0.888
39 H 0.078 0.922
40 H 0.096 0.904
41 H 0.094 0.906
42 H 0.100 0.900
43 H 0.105 0.895
44 H 0.091 0.909
45 H 0.091 0.909
46 H 0.108 0.892
47 H 0.108 0.892
48 H 0.078 0.922
49 H 0.100 0.900
50 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -17.116 -25.137 -7.721 31.376
hybrid contribution 0.898 0.681 -2.197 2.469
sum -16.218 -24.456 -9.918 30.976
Atomic orbital electron populations
1.21808 0.95666 1.01470 1.02177 1.21585 0.96276 0.95997 1.01855
1.20947 0.92574 0.96081 1.00020 0.90397 1.22004 1.01312 1.02186
0.95754 1.21813 0.97877 0.93682 1.04108 1.20799 0.81393 0.91939
0.75431 1.90687 1.54116 1.46672 1.49267 1.47743 1.06577 1.06550
1.73306 1.21872 0.93930 0.89248 1.02139 1.22218 0.97381 0.83766
0.94399 0.86417 1.22987 0.97830 0.98781 0.98241 1.21975 1.00238
0.98736 0.81040 1.48390 1.50434 1.30719 1.06812 1.20059 0.78502
0.80555 0.87042 1.90717 1.61776 1.72645 1.13588 1.23502 1.01579
0.99431 1.05155 1.85419 1.59854 1.30949 1.07210 1.22901 1.34647
1.16189 0.94560 0.90853 1.24995 0.96038 0.97071 0.95469 1.70030
1.38772 1.31459 1.09990 0.86111 0.79173 0.80068 0.80104 1.19614
1.20546 1.20565 1.22380 0.92387 0.90523 0.97139 0.92880 0.92327
0.92717 0.92077 0.91945 0.93381 0.90694 0.92634 0.88904 0.88763
0.92173 0.90396 0.90606 0.90049 0.89523 0.90872 0.90854 0.89240
0.89188 0.92223 0.89978 0.91388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.82 9.67 37.16 0.36 -0.46 16
2 C -0.12 -0.62 5.40 -26.74 -0.14 -0.76 16
3 C -0.08 -0.53 2.04 -90.62 -0.18 -0.72 16
4 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16
5 C -0.16 -1.27 8.69 37.16 0.32 -0.95 16
6 C -0.13 -0.80 3.73 -27.88 -0.10 -0.90 16
7 C 0.52 4.79 7.40 -10.98 -0.08 4.70 16
8 O -0.53 -6.95 13.33 5.56 0.07 -6.88 16
9 N -0.61 -4.90 2.91 -171.49 -0.50 -5.40 16
10 C 0.07 0.34 8.93 59.85 0.53 0.87 16
11 C 0.13 1.25 3.45 -65.79 -0.23 1.03 16
12 H 0.12 1.42 7.01 -51.92 -0.36 1.05 16
13 C -0.14 -1.11 6.51 -24.90 -0.16 -1.27 16
14 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16
15 N -0.63 -9.05 3.33 -170.52 -0.57 -9.62 16
16 C 0.55 10.74 7.87 -10.98 -0.09 10.66 16
17 O -0.51 -12.11 16.12 5.55 0.09 -12.02 16
18 C -0.15 -3.01 5.35 36.00 0.19 -2.82 16
19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16
20 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16
21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16
22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16
23 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16
24 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16
25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
28 C 0.10 1.23 6.48 -2.53 -0.02 1.21 16
29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16
30 H 0.06 0.33 6.57 -51.93 -0.34 -0.01 16
31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16
33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16
34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.07 0.81 5.94 -51.93 -0.31 0.50 16
36 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16
37 H 0.09 0.37 8.11 -51.93 -0.42 -0.05 16
38 H 0.09 0.43 7.40 -51.93 -0.38 0.05 16
39 H 0.06 0.21 8.08 -51.93 -0.42 -0.21 16
40 H 0.08 0.40 6.30 -51.93 -0.33 0.07 16
41 H 0.08 0.24 6.44 -51.93 -0.33 -0.10 16
42 H 0.08 0.52 7.05 -51.93 -0.37 0.16 16
43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
45 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16
46 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16
47 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16
48 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16
49 H 0.08 1.18 8.04 -51.92 -0.42 0.77 16
50 H 0.07 0.75 6.28 -51.93 -0.33 0.43 16
LS Contribution 406.62 15.07 6.13 6.13
Total: -1.00 -36.18 406.62 -9.23 -45.41
By element:
Atomic # 1 Polarization: 5.22 SS G_CDS: -8.54 Total: -3.32 kcal
Atomic # 6 Polarization: -1.90 SS G_CDS: 0.58 Total: -1.32 kcal
Atomic # 7 Polarization: -40.19 SS G_CDS: -0.33 Total: -40.53 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: 0.16 Total: -18.90 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal
Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -36.18 -9.23 -45.41 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001523073088.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.393 kcal
(2) G-P(sol) polarization free energy of solvation -36.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds