Wall clock time and date at job start Sat Apr 11 2020 06:39:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52993 * 109.47545 * 2 1
4 4 H 1.09006 * 109.47001 * 305.00315 * 3 2 1
5 5 C 1.52999 * 109.47197 * 64.99808 * 3 2 1
6 6 C 1.53002 * 109.47412 * 185.00280 * 3 2 1
7 7 C 1.50695 * 109.47004 * 175.00111 * 6 3 2
8 8 O 1.21274 * 120.00413 * 0.27039 * 7 6 3
9 9 N 1.34784 * 119.99635 * 179.97438 * 7 6 3
10 10 C 1.46499 * 119.99893 * 0.02562 * 9 7 6
11 11 C 1.46499 * 119.99971 * 179.97438 * 9 7 6
12 12 H 1.09007 * 110.88449 * 357.57336 * 11 9 7
13 13 C 1.55152 * 111.00579 * 233.65104 * 11 9 7
14 14 C 1.54324 * 102.94217 * 206.42124 * 13 11 9
15 15 N 1.47021 * 107.26888 * 22.19430 * 14 13 11
16 16 C 1.34782 * 125.64334 * 181.02301 * 15 14 13
17 17 O 1.21286 * 119.99387 * 180.02562 * 16 15 14
18 18 C 1.50697 * 120.00504 * 0.03603 * 16 15 14
19 19 S 1.80992 * 109.47297 * 180.02562 * 18 16 15
20 20 C 1.76208 * 100.00057 * 180.02562 * 19 18 16
21 21 H 1.08001 * 119.99899 * 359.97438 * 20 19 18
22 22 C 1.38798 * 119.99845 * 180.02562 * 20 19 18
23 23 N 1.31633 * 120.00257 * 359.97438 * 22 20 19
24 24 Si 1.86803 * 119.99805 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.46987 * 359.97438 * 24 22 20
26 26 H 1.48498 * 109.47051 * 119.99635 * 24 22 20
27 27 H 1.48500 * 109.46977 * 240.00024 * 24 22 20
28 28 C 1.47420 * 108.70438 * 1.05743 * 15 14 13
29 29 H 1.08997 * 109.47824 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47191 * 300.00024 * 1 2 3
31 31 H 1.09002 * 109.47169 * 59.99860 * 1 2 3
32 32 H 1.09003 * 109.46705 * 239.99854 * 2 1 3
33 33 H 1.08994 * 109.47271 * 120.00441 * 2 1 3
34 34 H 1.09006 * 109.46731 * 60.00342 * 5 3 2
35 35 H 1.08997 * 109.47332 * 179.97438 * 5 3 2
36 36 H 1.08996 * 109.47531 * 300.00909 * 5 3 2
37 37 H 1.09005 * 109.47089 * 54.99859 * 6 3 2
38 38 H 1.09002 * 109.46787 * 295.00201 * 6 3 2
39 39 H 1.08996 * 109.47008 * 90.00348 * 10 9 7
40 40 H 1.08997 * 109.46865 * 210.00034 * 10 9 7
41 41 H 1.08998 * 109.47058 * 329.99547 * 10 9 7
42 42 H 1.08997 * 110.71914 * 324.78693 * 13 11 9
43 43 H 1.09001 * 110.72225 * 88.05800 * 13 11 9
44 44 H 1.09001 * 109.88422 * 262.77091 * 14 13 11
45 45 H 1.09009 * 110.00940 * 141.67803 * 14 13 11
46 46 H 1.09003 * 109.47123 * 300.00403 * 18 16 15
47 47 H 1.09003 * 109.46843 * 60.00319 * 18 16 15
48 48 H 0.96998 * 119.99707 * 180.02562 * 23 22 20
49 49 H 1.09009 * 110.36538 * 217.03442 * 28 15 14
50 50 H 1.09000 * 110.36617 * 94.71249 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 1.6353 2.1265 1.3073
6 6 3.5649 1.4442 -0.1258
7 6 4.0570 2.8632 -0.2493
8 8 3.2666 3.7828 -0.2329
9 7 5.3763 3.1106 -0.3719
10 6 6.3316 2.0000 -0.3858
11 6 5.8547 4.4899 -0.4926
12 1 5.0200 5.1908 -0.5089
13 6 6.7497 4.6604 -1.7484
14 6 7.6618 5.8446 -1.3647
15 7 7.6799 5.9238 0.1032
16 6 8.3478 6.8398 0.8322
17 8 8.2912 6.8093 2.0434
18 6 9.1646 7.9019 0.1426
19 16 9.9346 8.9714 1.3832
20 6 10.8008 10.0874 0.3300
21 1 10.7436 9.9724 -0.7424
22 6 11.5574 11.1136 0.8786
23 7 11.6276 11.2534 2.1856
24 14 12.4762 12.2962 -0.2380
25 1 12.2365 11.9257 -1.6558
26 1 11.9925 13.6797 0.0012
27 1 13.9306 12.2230 0.0532
28 6 6.8472 4.8349 0.6457
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.8932 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 2.0700 1.5874 2.1491
35 1 1.9991 3.1540 1.3075
36 1 0.5490 2.1252 1.3970
37 1 3.8571 0.8798 -1.0114
38 1 4.0030 0.9834 0.7596
39 1 6.4846 1.6652 -1.4117
40 1 7.2812 2.3325 0.0334
41 1 5.9397 1.1762 0.2108
42 1 7.3394 3.7612 -1.9266
43 1 6.1457 4.9061 -2.6219
44 1 7.2632 6.7697 -1.7811
45 1 8.6713 5.6744 -1.7392
46 1 9.9397 7.4295 -0.4609
47 1 8.5168 8.4983 -0.5000
48 1 12.1561 11.9708 2.5688
49 1 6.3073 5.1746 1.5297
50 1 7.4643 3.9693 0.8863
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001523073088.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:46
Heat of formation + Delta-G solvation = -104.061180 kcal
Electronic energy + Delta-G solvation = -27433.713237 eV
Core-core repulsion = 23585.846845 eV
Total energy + Delta-G solvation = -3847.866392 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.61170 -40.68943 -38.75550 -37.20768 -36.13787 -34.59871 -32.76215 -31.48247
-30.89803 -29.59318 -28.41393 -27.77471 -27.51662 -25.19155 -24.30631 -22.30755
-20.88903 -20.80259 -19.99023 -19.60306 -18.42523 -18.17204 -17.39869 -16.90089
-16.78408 -16.76572 -16.43627 -15.86537 -15.70195 -15.49550 -15.04918 -14.84042
-14.65395 -14.42642 -14.28174 -14.10156 -13.83664 -13.76283 -13.50939 -13.41290
-13.16559 -13.08892 -12.92148 -12.87558 -12.79652 -12.65322 -12.61630 -12.51335
-12.17180 -11.79807 -11.72817 -11.68620 -11.51724 -11.38062 -11.16867 -11.06947
-10.67928 -10.29960 -9.91517 -9.58703 -8.70051 -8.35906 -6.15021 1.18711
1.41314 1.41424 1.48871 1.55422 1.61876 1.79680 2.20461 2.26052
2.98519 3.18845 3.41122 3.43885 3.65142 3.84833 3.86798 3.91614
3.99756 4.07443 4.15620 4.24999 4.26109 4.33515 4.41878 4.46968
4.52490 4.61691 4.65590 4.69538 4.73011 4.75816 4.76644 4.85043
4.91701 4.92363 5.01589 5.09168 5.15312 5.19622 5.20413 5.26058
5.32461 5.40947 5.47999 5.54936 5.60005 6.18879 6.28601 6.36848
7.03287 7.05370 7.17850 8.73737
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.032521 B = 0.001754 C = 0.001726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 860.785444 B =15962.425452 C =16222.820363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.113 4.113
3 C -0.076 4.076
4 H 0.058 0.942
5 C -0.154 4.154
6 C -0.127 4.127
7 C 0.507 3.493
8 O -0.580 6.580
9 N -0.605 5.605
10 C 0.063 3.937
11 C 0.134 3.866
12 H 0.090 0.910
13 C -0.121 4.121
14 C 0.093 3.907
15 N -0.616 5.616
16 C 0.547 3.453
17 O -0.567 6.567
18 C -0.118 4.118
19 S -0.153 6.153
20 C -0.545 4.545
21 H 0.084 0.916
22 C 0.013 3.987
23 N -0.912 5.912
24 Si 1.001 2.999
25 H -0.255 1.255
26 H -0.275 1.275
27 H -0.273 1.273
28 C 0.099 3.901
29 H 0.062 0.938
30 H 0.050 0.950
31 H 0.048 0.952
32 H 0.076 0.924
33 H 0.071 0.929
34 H 0.056 0.944
35 H 0.042 0.958
36 H 0.054 0.946
37 H 0.123 0.877
38 H 0.115 0.885
39 H 0.084 0.916
40 H 0.076 0.924
41 H 0.097 0.903
42 H 0.108 0.892
43 H 0.102 0.898
44 H 0.077 0.923
45 H 0.092 0.908
46 H 0.112 0.888
47 H 0.106 0.894
48 H 0.271 0.729
49 H 0.050 0.950
50 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.105 -28.265 -12.941 35.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.150 4.150
3 C -0.095 4.095
4 H 0.076 0.924
5 C -0.211 4.211
6 C -0.166 4.166
7 C 0.298 3.702
8 O -0.459 6.459
9 N -0.338 5.338
10 C -0.079 4.079
11 C 0.028 3.972
12 H 0.108 0.892
13 C -0.160 4.160
14 C -0.029 4.029
15 N -0.351 5.351
16 C 0.335 3.665
17 O -0.446 6.446
18 C -0.269 4.269
19 S 0.074 5.926
20 C -0.693 4.693
21 H 0.102 0.898
22 C -0.191 4.191
23 N -0.548 5.548
24 Si 0.822 3.178
25 H -0.179 1.179
26 H -0.200 1.200
27 H -0.198 1.198
28 C -0.025 4.025
29 H 0.081 0.919
30 H 0.069 0.931
31 H 0.067 0.933
32 H 0.095 0.905
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.061 0.939
36 H 0.073 0.927
37 H 0.141 0.859
38 H 0.133 0.867
39 H 0.103 0.897
40 H 0.094 0.906
41 H 0.115 0.885
42 H 0.126 0.874
43 H 0.121 0.879
44 H 0.096 0.904
45 H 0.110 0.890
46 H 0.130 0.870
47 H 0.124 0.876
48 H 0.080 0.920
49 H 0.069 0.931
50 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -16.495 -27.719 -10.976 34.072
hybrid contribution 0.592 1.355 -1.211 1.911
sum -15.902 -26.365 -12.187 33.113
Atomic orbital electron populations
1.21833 0.96131 1.01896 1.01565 1.21544 0.95860 0.94607 1.03035
1.20913 0.93519 0.96901 0.98174 0.92397 1.21962 1.01277 1.00605
0.97234 1.21858 0.96871 0.91561 1.06351 1.21500 0.81340 0.92934
0.74440 1.90679 1.55442 1.48351 1.51450 1.47833 1.06930 1.06442
1.72549 1.22179 0.92994 0.88510 1.04183 1.21921 0.96064 0.84790
0.94393 0.89192 1.22954 0.97044 0.98667 0.97308 1.22363 1.02143
1.00377 0.78061 1.48290 1.48586 1.29482 1.08763 1.19837 0.78943
0.81211 0.86473 1.90694 1.63961 1.74191 1.15739 1.23290 1.02054
0.98664 1.02932 1.85626 1.61316 1.33516 1.12128 1.23230 1.34741
1.16431 0.94894 0.89767 1.26149 0.96865 0.99008 0.97107 1.70196
1.39849 1.32458 1.12321 0.84879 0.77515 0.77064 0.78317 1.17895
1.20014 1.19821 1.22507 0.92735 0.90112 0.97132 0.91888 0.93090
0.93283 0.90535 0.90988 0.92458 0.93884 0.92706 0.85931 0.86733
0.89735 0.90573 0.88496 0.87405 0.87911 0.90431 0.88963 0.87015
0.87565 0.91967 0.93108 0.89505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.47 9.67 71.98 0.70 -0.77 16
2 C -0.11 -0.90 5.40 30.59 0.17 -0.73 16
3 C -0.08 -0.96 2.04 -10.80 -0.02 -0.98 16
4 H 0.06 0.97 7.96 -2.38 -0.02 0.95 16
5 C -0.15 -2.55 8.69 71.98 0.63 -1.93 16
6 C -0.13 -1.17 3.73 29.85 0.11 -1.06 16
7 C 0.51 8.87 7.40 87.65 0.65 9.52 16
8 O -0.58 -15.74 13.33 -3.01 -0.04 -15.78 16
9 N -0.61 -8.51 2.91 -814.86 -2.37 -10.88 16
10 C 0.06 0.35 8.93 127.77 1.14 1.49 16
11 C 0.13 2.50 3.45 46.38 0.16 2.66 16
12 H 0.09 2.23 7.01 -2.38 -0.02 2.21 16
13 C -0.12 -1.52 6.51 31.78 0.21 -1.31 16
14 C 0.09 1.69 6.49 86.73 0.56 2.25 16
15 N -0.62 -17.39 3.33 -811.78 -2.70 -20.09 16
16 C 0.55 21.67 7.87 87.66 0.69 22.36 16
17 O -0.57 -28.03 16.12 -3.05 -0.05 -28.08 16
18 C -0.12 -4.86 5.35 71.23 0.38 -4.48 16
19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16
20 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16
21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16
22 C 0.01 0.77 5.49 84.86 0.47 1.23 16
23 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16
24 Si 1.00 43.67 29.55 68.60 2.03 45.70 16
25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
28 C 0.10 2.41 6.48 86.85 0.56 2.97 16
29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
30 H 0.05 0.54 6.57 -2.38 -0.02 0.53 16
31 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16
32 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16
33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16
34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
35 H 0.04 1.00 5.94 -2.39 -0.01 0.99 16
36 H 0.05 0.87 6.56 -2.39 -0.02 0.86 16
37 H 0.12 0.45 8.11 -2.38 -0.02 0.43 16
38 H 0.11 0.63 7.40 -2.39 -0.02 0.62 16
39 H 0.08 0.13 8.08 -2.39 -0.02 0.11 16
40 H 0.08 0.49 6.30 -2.39 -0.02 0.48 16
41 H 0.10 0.17 6.44 -2.39 -0.02 0.15 16
42 H 0.11 0.85 7.05 -2.39 -0.02 0.83 16
43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
45 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16
46 H 0.11 4.06 8.14 -2.39 -0.02 4.05 16
47 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16
48 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
49 H 0.05 1.56 8.04 -2.38 -0.02 1.54 16
50 H 0.09 1.81 6.28 -2.39 -0.01 1.80 16
Total: -1.00 -84.86 406.62 3.94 -80.92
By element:
Atomic # 1 Polarization: 12.74 SS G_CDS: 0.91 Total: 13.65 kcal
Atomic # 6 Polarization: -6.51 SS G_CDS: 7.04 Total: 0.53 kcal
Atomic # 7 Polarization: -82.32 SS G_CDS: -4.78 Total: -87.11 kcal
Atomic # 8 Polarization: -43.77 SS G_CDS: -0.09 Total: -43.86 kcal
Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal
Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal
Total: -84.86 3.94 -80.92 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001523073088.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.141 kcal
(2) G-P(sol) polarization free energy of solvation -84.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds