Wall clock time and date at job start Sat Apr 11 2020 06:40:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52990 * 109.47211 * 2 1
4 4 H 1.08998 * 109.47508 * 54.99477 * 3 2 1
5 5 C 1.53001 * 109.47023 * 294.99355 * 3 2 1
6 6 C 1.50703 * 109.47398 * 174.99677 * 3 2 1
7 7 O 1.21283 * 119.99488 * 359.97438 * 6 3 2
8 8 N 1.34777 * 120.00290 * 180.02562 * 6 3 2
9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3
10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6
11 11 C 1.53043 * 109.45968 * 295.02330 * 10 9 8
12 12 C 1.53194 * 109.31504 * 178.59964 * 11 10 9
13 13 N 1.46927 * 108.76153 * 54.65829 * 12 11 10
14 14 C 1.34778 * 120.63055 * 126.36386 * 13 12 11
15 15 O 1.21275 * 119.99932 * 180.02562 * 14 13 12
16 16 C 1.50693 * 119.99951 * 0.02562 * 14 13 12
17 17 S 1.80997 * 109.47177 * 180.02562 * 16 14 13
18 18 C 1.76206 * 99.99989 * 179.97438 * 17 16 14
19 19 H 1.07993 * 120.00161 * 359.97438 * 18 17 16
20 20 C 1.38803 * 119.99576 * 179.97438 * 18 17 16
21 21 N 1.31625 * 119.99694 * 179.97438 * 20 18 17
22 22 Si 1.86799 * 120.00377 * 359.97438 * 20 18 17
23 23 H 1.48500 * 109.46865 * 90.00141 * 22 20 18
24 24 H 1.48500 * 109.47248 * 210.00176 * 22 20 18
25 25 H 1.48499 * 109.46951 * 330.00330 * 22 20 18
26 26 C 1.46930 * 118.73843 * 306.37970 * 13 12 11
27 27 C 1.53040 * 109.46119 * 174.97058 * 10 9 8
28 28 H 1.09006 * 109.46681 * 60.00445 * 1 2 3
29 29 H 1.09001 * 109.47402 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47777 * 300.00524 * 1 2 3
31 31 H 1.08997 * 109.47295 * 239.99253 * 2 1 3
32 32 H 1.09006 * 109.46681 * 119.99555 * 2 1 3
33 33 H 1.08992 * 109.47503 * 300.00327 * 5 3 2
34 34 H 1.08998 * 109.46818 * 60.00401 * 5 3 2
35 35 H 1.09008 * 109.47076 * 179.97438 * 5 3 2
36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 3
37 37 H 1.09004 * 109.46963 * 299.72135 * 9 8 6
38 38 H 1.08994 * 109.47567 * 59.72287 * 9 8 6
39 39 H 1.08995 * 109.46326 * 54.99372 * 10 9 8
40 40 H 1.08996 * 109.49962 * 298.56564 * 11 10 9
41 41 H 1.09005 * 109.49682 * 58.66208 * 11 10 9
42 42 H 1.08999 * 109.59649 * 294.87229 * 12 11 10
43 43 H 1.09001 * 109.70546 * 174.50591 * 12 11 10
44 44 H 1.09008 * 109.47197 * 299.99905 * 16 14 13
45 45 H 1.08999 * 109.47807 * 59.99814 * 16 14 13
46 46 H 0.96999 * 120.00542 * 179.97438 * 21 20 18
47 47 H 1.08997 * 109.58869 * 293.82261 * 26 13 12
48 48 H 1.08996 * 109.70248 * 173.46764 * 26 13 12
49 49 H 1.08994 * 109.50075 * 301.33635 * 27 10 9
50 50 H 1.09001 * 109.49836 * 61.43231 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6053 1.9815 0.8417
5 6 1.6354 2.1264 -1.3074
6 6 3.5419 1.4442 0.1239
7 8 4.1449 0.3951 0.2048
8 7 4.2149 2.6118 0.1459
9 6 5.6754 2.6133 0.2603
10 6 6.1858 4.0556 0.2553
11 6 5.8845 4.6984 -1.1005
12 6 6.3655 6.1529 -1.0898
13 7 7.7852 6.1784 -0.7123
14 6 8.6914 6.8029 -1.4903
15 8 9.8605 6.8165 -1.1680
16 6 8.2520 7.4842 -2.7606
17 16 9.6884 8.2239 -3.5765
18 6 8.9078 8.9297 -4.9897
19 1 7.8419 8.8236 -5.1272
20 6 9.6629 9.6220 -5.9262
21 7 9.0798 10.1489 -6.9822
22 14 11.5064 9.8062 -5.6881
23 1 12.2053 8.6663 -6.3342
24 1 11.9605 11.0788 -6.3043
25 1 11.8191 9.8199 -4.2364
26 6 8.1983 5.5098 0.5291
27 6 7.6965 4.0627 0.5003
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 2.0700 1.5873 -2.1492
34 1 0.5491 2.1251 -1.3970
35 1 1.9983 3.1542 -1.3073
36 1 3.7325 3.4509 0.0816
37 1 5.9674 2.1277 1.1914
38 1 6.1064 2.0725 -0.5822
39 1 5.6874 4.6199 1.0434
40 1 6.4029 4.1495 -1.8866
41 1 4.8106 4.6719 -1.2851
42 1 5.7846 6.7246 -0.3660
43 1 6.2432 6.5877 -2.0818
44 1 7.7938 6.7522 -3.4258
45 1 7.5274 8.2631 -2.5233
46 1 9.6073 10.6330 -7.6365
47 1 7.7669 6.0292 1.3848
48 1 9.2854 5.5181 0.6068
49 1 7.9124 3.5837 1.4553
50 1 8.1976 3.5197 -0.3010
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001743257191.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:30
Heat of formation + Delta-G solvation = -101.386710 kcal
Electronic energy + Delta-G solvation = -27371.109644 eV
Core-core repulsion = 23523.359226 eV
Total energy + Delta-G solvation = -3847.750418 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.53343 -39.92718 -37.83159 -35.90275 -35.25346 -33.03080 -32.45829 -31.57935
-30.27812 -29.32641 -27.34789 -25.70026 -25.58896 -23.67783 -23.43585 -21.85815
-21.01608 -20.11633 -19.15657 -17.78482 -17.52709 -16.76706 -16.46893 -16.02086
-15.71788 -15.47847 -15.17788 -14.97805 -14.85358 -14.38992 -14.18546 -13.93206
-13.87005 -13.65409 -13.51653 -13.13589 -13.09368 -12.80169 -12.74454 -12.59298
-12.36845 -12.11190 -12.04955 -12.01090 -11.52576 -11.32613 -11.28473 -11.22599
-11.11572 -11.02508 -10.91032 -10.88764 -10.60375 -10.03883 -9.87593 -9.49683
-9.42456 -9.02292 -8.65377 -8.51165 -6.94246 -6.30953 -4.02845 2.31362
2.67983 2.79724 2.90180 3.17215 3.31956 3.49163 3.56780 4.20479
4.26210 4.31181 4.32593 4.34213 4.40204 4.46179 4.65449 4.81607
4.83729 4.90907 4.94292 5.04075 5.04328 5.08177 5.09779 5.11601
5.18512 5.26314 5.34382 5.38694 5.41215 5.44047 5.52835 5.55544
5.59829 5.61970 5.66122 5.71969 5.78527 5.80883 5.82428 5.91957
5.95044 6.00278 6.11239 6.52574 7.11194 7.42308 7.87838 7.91975
8.38926 8.40694 9.15312 10.78196
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017652 B = 0.001961 C = 0.001813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.811198 B =14277.923979 C =15441.471544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.106 4.106
3 C -0.111 4.111
4 H 0.096 0.904
5 C -0.147 4.147
6 C 0.515 3.485
7 O -0.540 6.540
8 N -0.729 5.729
9 C 0.124 3.876
10 C -0.098 4.098
11 C -0.131 4.131
12 C 0.107 3.893
13 N -0.619 5.619
14 C 0.534 3.466
15 O -0.519 6.519
16 C -0.122 4.122
17 S -0.143 6.143
18 C -0.521 4.521
19 H 0.088 0.912
20 C 0.096 3.904
21 N -0.880 5.880
22 Si 0.856 3.144
23 H -0.267 1.267
24 H -0.274 1.274
25 H -0.235 1.235
26 C 0.114 3.886
27 C -0.126 4.126
28 H 0.058 0.942
29 H 0.057 0.943
30 H 0.054 0.946
31 H 0.069 0.931
32 H 0.069 0.931
33 H 0.062 0.938
34 H 0.071 0.929
35 H 0.060 0.940
36 H 0.400 0.600
37 H 0.068 0.932
38 H 0.069 0.931
39 H 0.079 0.921
40 H 0.073 0.927
41 H 0.073 0.927
42 H 0.068 0.932
43 H 0.092 0.908
44 H 0.096 0.904
45 H 0.096 0.904
46 H 0.271 0.729
47 H 0.064 0.936
48 H 0.095 0.905
49 H 0.077 0.923
50 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.655 -16.007 17.508 29.571
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.144 4.144
3 C -0.133 4.133
4 H 0.114 0.886
5 C -0.204 4.204
6 C 0.301 3.699
7 O -0.417 6.417
8 N -0.382 5.382
9 C 0.000 4.000
10 C -0.117 4.117
11 C -0.170 4.170
12 C -0.016 4.016
13 N -0.355 5.355
14 C 0.321 3.679
15 O -0.393 6.393
16 C -0.272 4.272
17 S 0.083 5.917
18 C -0.669 4.669
19 H 0.106 0.894
20 C -0.113 4.113
21 N -0.516 5.516
22 Si 0.681 3.319
23 H -0.192 1.192
24 H -0.199 1.199
25 H -0.159 1.159
26 C -0.008 4.008
27 C -0.165 4.165
28 H 0.077 0.923
29 H 0.076 0.924
30 H 0.073 0.927
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.081 0.919
34 H 0.090 0.910
35 H 0.079 0.921
36 H 0.235 0.765
37 H 0.086 0.914
38 H 0.087 0.913
39 H 0.098 0.902
40 H 0.092 0.908
41 H 0.092 0.908
42 H 0.086 0.914
43 H 0.110 0.890
44 H 0.114 0.886
45 H 0.114 0.886
46 H 0.081 0.919
47 H 0.082 0.918
48 H 0.113 0.887
49 H 0.096 0.904
50 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -15.442 -16.632 17.869 28.886
hybrid contribution -0.968 0.638 -0.614 1.312
sum -16.411 -15.995 17.255 28.686
Atomic orbital electron populations
1.21849 0.95397 1.02001 1.01903 1.21343 0.95414 0.94106 1.03530
1.21369 0.91687 0.99581 1.00640 0.88558 1.21844 1.02562 1.00198
0.95820 1.20738 0.90067 0.83501 0.75568 1.90712 1.70417 1.31459
1.49080 1.46064 1.07900 1.08808 1.75412 1.21423 0.79503 0.96656
1.02414 1.21396 0.96953 0.94979 0.98362 1.22016 1.01383 0.96201
0.97366 1.21729 0.81295 0.96479 1.02114 1.48072 1.07840 1.55687
1.23890 1.20302 0.85395 0.77760 0.84396 1.90687 1.17354 1.58970
1.72329 1.23307 1.04654 1.02687 0.96550 1.84814 1.10673 1.69160
1.27012 1.22302 0.97946 1.40012 1.06620 0.89411 1.24710 0.99067
0.93666 0.93844 1.69932 1.36611 1.34448 1.10654 0.86737 0.85006
0.78575 0.81552 1.19206 1.19924 1.15929 1.21493 1.02064 0.91336
0.85953 1.21895 0.94263 0.97382 1.02956 0.92349 0.92419 0.92714
0.91270 0.91186 0.91904 0.91032 0.92122 0.76512 0.91357 0.91265
0.90223 0.90803 0.90797 0.91358 0.88981 0.88598 0.88550 0.91929
0.91763 0.88686 0.90439 0.90914
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16
2 C -0.11 -0.70 4.75 -26.74 -0.13 -0.83 16
3 C -0.11 -0.64 2.72 -91.77 -0.25 -0.89 16
4 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
5 C -0.15 -0.67 8.84 37.16 0.33 -0.34 16
6 C 0.51 4.47 7.15 -10.98 -0.08 4.39 16
7 O -0.54 -7.02 15.92 5.55 0.09 -6.93 16
8 N -0.73 -4.75 5.16 -60.30 -0.31 -5.06 16
9 C 0.12 0.92 5.06 -4.04 -0.02 0.89 16
10 C -0.10 -0.64 2.19 -90.58 -0.20 -0.83 16
11 C -0.13 -0.95 5.25 -26.61 -0.14 -1.09 16
12 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16
13 N -0.62 -7.80 2.97 -172.77 -0.51 -8.31 16
14 C 0.53 9.41 7.72 -10.99 -0.08 9.32 16
15 O -0.52 -11.10 15.28 5.56 0.08 -11.01 16
16 C -0.12 -2.31 4.50 36.00 0.16 -2.15 16
17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16
18 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16
19 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16
20 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16
21 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16
22 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16
23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16
24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16
25 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16
26 C 0.11 1.20 6.43 -3.71 -0.02 1.17 16
27 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16
28 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16
29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16
31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.07 0.55 7.95 -51.93 -0.41 0.13 16
33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.07 0.26 6.56 -51.93 -0.34 -0.08 16
35 H 0.06 0.21 7.57 -51.92 -0.39 -0.18 16
36 H 0.40 1.62 7.07 -40.82 -0.29 1.33 16
37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
41 H 0.07 0.39 7.15 -51.93 -0.37 0.02 16
42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16
44 H 0.10 1.70 7.69 -51.91 -0.40 1.30 16
45 H 0.10 1.70 7.94 -51.92 -0.41 1.29 16
46 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16
47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
48 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16
49 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 405.70 15.07 6.11 6.11
Total: -1.00 -35.76 405.70 -9.20 -44.95
By element:
Atomic # 1 Polarization: 5.90 SS G_CDS: -8.70 Total: -2.80 kcal
Atomic # 6 Polarization: -2.75 SS G_CDS: -0.02 Total: -2.78 kcal
Atomic # 7 Polarization: -38.87 SS G_CDS: -0.05 Total: -38.92 kcal
Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.94 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal
Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -35.76 -9.20 -44.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001743257191.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.432 kcal
(2) G-P(sol) polarization free energy of solvation -35.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds