Wall clock time and date at job start Sat Apr 11 2020 06:40:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52990 * 109.47211 * 2 1
4 4 H 1.08998 * 109.47508 * 54.99477 * 3 2 1
5 5 C 1.53001 * 109.47023 * 294.99355 * 3 2 1
6 6 C 1.50703 * 109.47398 * 174.99677 * 3 2 1
7 7 O 1.21283 * 119.99488 * 359.97438 * 6 3 2
8 8 N 1.34777 * 120.00290 * 180.02562 * 6 3 2
9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3
10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6
11 11 C 1.53043 * 109.45968 * 295.02330 * 10 9 8
12 12 C 1.53194 * 109.31504 * 178.59964 * 11 10 9
13 13 N 1.46927 * 108.76153 * 54.65829 * 12 11 10
14 14 C 1.34778 * 120.63055 * 126.36386 * 13 12 11
15 15 O 1.21275 * 119.99932 * 180.02562 * 14 13 12
16 16 C 1.50693 * 119.99951 * 0.02562 * 14 13 12
17 17 S 1.80997 * 109.47177 * 180.02562 * 16 14 13
18 18 C 1.76206 * 99.99989 * 179.97438 * 17 16 14
19 19 H 1.07993 * 120.00161 * 359.97438 * 18 17 16
20 20 C 1.38803 * 119.99576 * 179.97438 * 18 17 16
21 21 N 1.31625 * 119.99694 * 179.97438 * 20 18 17
22 22 Si 1.86799 * 120.00377 * 359.97438 * 20 18 17
23 23 H 1.48500 * 109.46865 * 90.00141 * 22 20 18
24 24 H 1.48500 * 109.47248 * 210.00176 * 22 20 18
25 25 H 1.48499 * 109.46951 * 330.00330 * 22 20 18
26 26 C 1.46930 * 118.73843 * 306.37970 * 13 12 11
27 27 C 1.53040 * 109.46119 * 174.97058 * 10 9 8
28 28 H 1.09006 * 109.46681 * 60.00445 * 1 2 3
29 29 H 1.09001 * 109.47402 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47777 * 300.00524 * 1 2 3
31 31 H 1.08997 * 109.47295 * 239.99253 * 2 1 3
32 32 H 1.09006 * 109.46681 * 119.99555 * 2 1 3
33 33 H 1.08992 * 109.47503 * 300.00327 * 5 3 2
34 34 H 1.08998 * 109.46818 * 60.00401 * 5 3 2
35 35 H 1.09008 * 109.47076 * 179.97438 * 5 3 2
36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 3
37 37 H 1.09004 * 109.46963 * 299.72135 * 9 8 6
38 38 H 1.08994 * 109.47567 * 59.72287 * 9 8 6
39 39 H 1.08995 * 109.46326 * 54.99372 * 10 9 8
40 40 H 1.08996 * 109.49962 * 298.56564 * 11 10 9
41 41 H 1.09005 * 109.49682 * 58.66208 * 11 10 9
42 42 H 1.08999 * 109.59649 * 294.87229 * 12 11 10
43 43 H 1.09001 * 109.70546 * 174.50591 * 12 11 10
44 44 H 1.09008 * 109.47197 * 299.99905 * 16 14 13
45 45 H 1.08999 * 109.47807 * 59.99814 * 16 14 13
46 46 H 0.96999 * 120.00542 * 179.97438 * 21 20 18
47 47 H 1.08997 * 109.58869 * 293.82261 * 26 13 12
48 48 H 1.08996 * 109.70248 * 173.46764 * 26 13 12
49 49 H 1.08994 * 109.50075 * 301.33635 * 27 10 9
50 50 H 1.09001 * 109.49836 * 61.43231 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6053 1.9815 0.8417
5 6 1.6354 2.1264 -1.3074
6 6 3.5419 1.4442 0.1239
7 8 4.1449 0.3951 0.2048
8 7 4.2149 2.6118 0.1459
9 6 5.6754 2.6133 0.2603
10 6 6.1858 4.0556 0.2553
11 6 5.8845 4.6984 -1.1005
12 6 6.3655 6.1529 -1.0898
13 7 7.7852 6.1784 -0.7123
14 6 8.6914 6.8029 -1.4903
15 8 9.8605 6.8165 -1.1680
16 6 8.2520 7.4842 -2.7606
17 16 9.6884 8.2239 -3.5765
18 6 8.9078 8.9297 -4.9897
19 1 7.8419 8.8236 -5.1272
20 6 9.6629 9.6220 -5.9262
21 7 9.0798 10.1489 -6.9822
22 14 11.5064 9.8062 -5.6881
23 1 12.2053 8.6663 -6.3342
24 1 11.9605 11.0788 -6.3043
25 1 11.8191 9.8199 -4.2364
26 6 8.1983 5.5098 0.5291
27 6 7.6965 4.0627 0.5003
28 1 -0.3633 0.5138 -0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 1.8934 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 2.0700 1.5873 -2.1492
34 1 0.5491 2.1251 -1.3970
35 1 1.9983 3.1542 -1.3073
36 1 3.7325 3.4509 0.0816
37 1 5.9674 2.1277 1.1914
38 1 6.1064 2.0725 -0.5822
39 1 5.6874 4.6199 1.0434
40 1 6.4029 4.1495 -1.8866
41 1 4.8106 4.6719 -1.2851
42 1 5.7846 6.7246 -0.3660
43 1 6.2432 6.5877 -2.0818
44 1 7.7938 6.7522 -3.4258
45 1 7.5274 8.2631 -2.5233
46 1 9.6073 10.6330 -7.6365
47 1 7.7669 6.0292 1.3848
48 1 9.2854 5.5181 0.6068
49 1 7.9124 3.5837 1.4553
50 1 8.1976 3.5197 -0.3010
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001743257191.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:40:29
Heat of formation + Delta-G solvation = -125.182892 kcal
Electronic energy + Delta-G solvation = -27372.141524 eV
Core-core repulsion = 23523.359226 eV
Total energy + Delta-G solvation = -3848.782298 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.36471 -40.86209 -38.82867 -36.47837 -36.08903 -34.67738 -33.90656 -32.40259
-30.89630 -30.45946 -28.17794 -27.80934 -26.12530 -24.43942 -24.22138 -22.47619
-21.80728 -20.79074 -20.28422 -19.52019 -18.34687 -17.92241 -17.21078 -17.11743
-16.85609 -16.68645 -16.54085 -15.86365 -15.66575 -15.41856 -15.06895 -15.03907
-14.90342 -14.61077 -14.44648 -14.24567 -14.12907 -13.74205 -13.53956 -13.38469
-13.33546 -13.10894 -13.02292 -12.94118 -12.63441 -12.55015 -12.49207 -12.19699
-11.98937 -11.86958 -11.70229 -11.60438 -11.59602 -11.56228 -11.17810 -10.89107
-10.72611 -10.51680 -10.07402 -9.69689 -9.00845 -8.52061 -6.22917 0.97540
1.30576 1.45711 1.52426 1.54341 1.66106 2.08535 2.23335 2.24592
2.68277 2.86244 3.51219 3.65263 3.69411 3.72313 3.86480 3.93841
4.00841 4.09253 4.18083 4.28044 4.35096 4.40636 4.42552 4.49529
4.54527 4.58930 4.62388 4.69778 4.73953 4.77385 4.86132 4.95406
4.96578 5.00162 5.04027 5.05373 5.13245 5.14647 5.21968 5.36103
5.40059 5.49472 5.52783 5.58108 5.70399 6.10811 6.26657 6.57667
6.93362 7.09756 7.28553 8.60113
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.017652 B = 0.001961 C = 0.001813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1585.811198 B =14277.923979 C =15441.471544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.107 4.107
3 C -0.105 4.105
4 H 0.122 0.878
5 C -0.145 4.145
6 C 0.509 3.491
7 O -0.592 6.592
8 N -0.715 5.715
9 C 0.129 3.871
10 C -0.084 4.084
11 C -0.127 4.127
12 C 0.099 3.901
13 N -0.605 5.605
14 C 0.532 3.468
15 O -0.566 6.566
16 C -0.105 4.105
17 S -0.181 6.181
18 C -0.527 4.527
19 H 0.064 0.936
20 C 0.047 3.953
21 N -0.915 5.915
22 Si 0.913 3.087
23 H -0.264 1.264
24 H -0.258 1.258
25 H -0.238 1.238
26 C 0.111 3.889
27 C -0.121 4.121
28 H 0.067 0.933
29 H 0.055 0.945
30 H 0.065 0.935
31 H 0.049 0.951
32 H 0.052 0.948
33 H 0.045 0.955
34 H 0.086 0.914
35 H 0.077 0.923
36 H 0.416 0.584
37 H 0.064 0.936
38 H 0.047 0.953
39 H 0.107 0.893
40 H 0.053 0.947
41 H 0.103 0.897
42 H 0.100 0.900
43 H 0.085 0.915
44 H 0.109 0.891
45 H 0.113 0.887
46 H 0.277 0.723
47 H 0.092 0.908
48 H 0.069 0.931
49 H 0.097 0.903
50 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.662 -15.659 19.331 31.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.145 4.145
3 C -0.126 4.126
4 H 0.140 0.860
5 C -0.202 4.202
6 C 0.297 3.703
7 O -0.472 6.472
8 N -0.368 5.368
9 C 0.005 3.995
10 C -0.103 4.103
11 C -0.165 4.165
12 C -0.023 4.023
13 N -0.339 5.339
14 C 0.319 3.681
15 O -0.445 6.445
16 C -0.256 4.256
17 S 0.046 5.954
18 C -0.674 4.674
19 H 0.082 0.918
20 C -0.159 4.159
21 N -0.553 5.553
22 Si 0.735 3.265
23 H -0.189 1.189
24 H -0.183 1.183
25 H -0.162 1.162
26 C -0.011 4.011
27 C -0.159 4.159
28 H 0.086 0.914
29 H 0.074 0.926
30 H 0.084 0.916
31 H 0.068 0.932
32 H 0.070 0.930
33 H 0.064 0.936
34 H 0.104 0.896
35 H 0.096 0.904
36 H 0.254 0.746
37 H 0.082 0.918
38 H 0.066 0.934
39 H 0.125 0.875
40 H 0.071 0.929
41 H 0.121 0.879
42 H 0.118 0.882
43 H 0.104 0.896
44 H 0.127 0.873
45 H 0.131 0.869
46 H 0.086 0.914
47 H 0.110 0.890
48 H 0.088 0.912
49 H 0.115 0.885
50 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -17.517 -16.266 19.704 30.979
hybrid contribution -0.491 0.432 -1.097 1.277
sum -18.008 -15.834 18.608 30.352
Atomic orbital electron populations
1.21817 0.93640 1.02288 1.02888 1.21323 0.96879 0.94594 1.01734
1.21392 0.89478 0.99339 1.02377 0.86028 1.21860 1.03475 1.00637
0.94233 1.21323 0.91311 0.83143 0.74521 1.90694 1.71598 1.33359
1.51544 1.45941 1.07532 1.09074 1.74212 1.21280 0.79994 0.96960
1.01311 1.21299 0.95794 0.94453 0.98762 1.21998 1.02843 0.94501
0.97139 1.22069 0.79246 0.98225 1.02767 1.48119 1.08642 1.53673
1.23494 1.20029 0.85422 0.78285 0.84350 1.90671 1.19291 1.61203
1.73366 1.23274 1.01840 1.03240 0.97219 1.84765 1.14583 1.69776
1.26284 1.22436 0.97093 1.39943 1.07972 0.91777 1.25532 1.03160
0.93511 0.93678 1.70005 1.38342 1.35404 1.11556 0.85893 0.80108
0.79183 0.81349 1.18870 1.18252 1.16176 1.21688 1.00995 0.92855
0.85525 1.21844 0.95228 0.95482 1.03378 0.91399 0.92610 0.91567
0.93234 0.92963 0.93553 0.89567 0.90419 0.74603 0.91812 0.93424
0.87518 0.92857 0.87903 0.88153 0.89637 0.87317 0.86866 0.91368
0.88976 0.91223 0.88469 0.92931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.14 9.67 71.98 0.70 -0.45 16
2 C -0.11 -1.36 4.75 30.59 0.15 -1.21 16
3 C -0.10 -1.00 2.72 -11.54 -0.03 -1.03 16
4 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16
5 C -0.14 -0.93 8.84 71.98 0.64 -0.30 16
6 C 0.51 8.18 7.15 87.66 0.63 8.81 16
7 O -0.59 -15.59 15.92 -3.04 -0.05 -15.64 16
8 N -0.71 -7.43 5.16 -463.07 -2.39 -9.82 16
9 C 0.13 1.65 5.06 86.38 0.44 2.09 16
10 C -0.08 -0.81 2.19 -10.77 -0.02 -0.84 16
11 C -0.13 -1.42 5.25 30.67 0.16 -1.25 16
12 C 0.10 1.47 6.34 86.36 0.55 2.02 16
13 N -0.61 -14.03 2.97 -818.90 -2.43 -16.47 16
14 C 0.53 18.36 7.72 87.65 0.68 19.04 16
15 O -0.57 -24.42 15.28 -3.01 -0.05 -24.47 16
16 C -0.11 -3.93 4.50 71.23 0.32 -3.60 16
17 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16
18 C -0.53 -30.43 10.04 67.96 0.68 -29.75 16
19 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16
20 C 0.05 2.73 5.50 84.86 0.47 3.20 16
21 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16
22 Si 0.91 44.98 27.74 68.60 1.90 46.88 16
23 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16
24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16
25 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16
26 C 0.11 2.09 6.43 86.36 0.56 2.65 16
27 C -0.12 -1.68 5.36 30.67 0.16 -1.51 16
28 H 0.07 0.40 6.57 -2.38 -0.02 0.38 16
29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16
30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16
31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.05 0.83 7.95 -2.38 -0.02 0.81 16
33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
34 H 0.09 0.34 6.56 -2.39 -0.02 0.32 16
35 H 0.08 0.24 7.57 -2.38 -0.02 0.22 16
36 H 0.42 1.59 7.07 -92.71 -0.66 0.93 16
37 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16
38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16
40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
41 H 0.10 0.61 7.15 -2.38 -0.02 0.59 16
42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
43 H 0.09 1.43 5.93 -2.39 -0.01 1.42 16
44 H 0.11 3.77 7.69 -2.39 -0.02 3.75 16
45 H 0.11 3.84 7.94 -2.40 -0.02 3.82 16
46 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16
47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
48 H 0.07 1.72 7.01 -2.39 -0.02 1.70 16
49 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
Total: -1.00 -81.29 405.70 2.53 -78.77
By element:
Atomic # 1 Polarization: 7.81 SS G_CDS: 0.23 Total: 8.04 kcal
Atomic # 6 Polarization: -8.20 SS G_CDS: 6.06 Total: -2.14 kcal
Atomic # 7 Polarization: -76.73 SS G_CDS: -4.52 Total: -81.26 kcal
Atomic # 8 Polarization: -40.01 SS G_CDS: -0.09 Total: -40.11 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal
Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal
Total: -81.29 2.53 -78.77 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001743257191.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.416 kcal
(2) G-P(sol) polarization free energy of solvation -81.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.767 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.183 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds