Wall clock time and date at job start Sat Apr 11 2020 06:39:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08998 * 109.47436 * 2 1
4 4 N 1.46498 * 109.47510 * 239.98972 * 2 1 3
5 5 C 1.34773 * 119.99494 * 85.00211 * 4 2 1
6 6 O 1.21290 * 120.00319 * 0.02562 * 5 4 2
7 7 C 1.50700 * 119.99756 * 179.97438 * 5 4 2
8 8 C 1.53003 * 109.47084 * 180.02562 * 7 5 4
9 9 C 1.52994 * 109.47224 * 60.00209 * 8 7 5
10 10 C 1.53001 * 109.47289 * 179.97438 * 8 7 5
11 11 C 1.53001 * 109.47038 * 300.00298 * 8 7 5
12 12 C 1.53003 * 109.46527 * 119.99464 * 2 1 3
13 13 C 1.53951 * 113.74100 * 281.99513 * 12 2 1
14 14 N 1.47818 * 86.03594 * 222.08420 * 13 12 2
15 15 C 1.34768 * 134.45725 * 204.64001 * 14 13 12
16 16 O 1.21288 * 120.00309 * 179.87135 * 15 14 13
17 17 C 1.50700 * 120.00174 * 359.87323 * 15 14 13
18 18 S 1.81004 * 109.47478 * 179.97438 * 17 15 14
19 19 C 1.76203 * 100.00129 * 180.02562 * 18 17 15
20 20 H 1.08002 * 119.99754 * 359.97438 * 19 18 17
21 21 C 1.38796 * 119.99986 * 180.02562 * 19 18 17
22 22 N 1.31634 * 119.99985 * 359.97438 * 21 19 18
23 23 Si 1.86797 * 119.99868 * 179.97438 * 21 19 18
24 24 H 1.48503 * 109.47078 * 90.00103 * 23 21 19
25 25 H 1.48500 * 109.47317 * 209.99761 * 23 21 19
26 26 H 1.48497 * 109.47333 * 329.99837 * 23 21 19
27 27 C 1.47580 * 91.04928 * 24.55008 * 14 13 12
28 28 H 1.08994 * 109.47372 * 175.81072 * 1 2 3
29 29 H 1.09001 * 109.47635 * 295.81857 * 1 2 3
30 30 H 1.09006 * 109.46564 * 55.81028 * 1 2 3
31 31 H 0.97001 * 120.00357 * 265.00587 * 4 2 1
32 32 H 1.08993 * 109.47299 * 299.99923 * 7 5 4
33 33 H 1.09000 * 109.47318 * 60.00327 * 7 5 4
34 34 H 1.09003 * 109.47539 * 60.00013 * 9 8 7
35 35 H 1.09002 * 109.47636 * 180.02562 * 9 8 7
36 36 H 1.09006 * 109.47371 * 299.99994 * 9 8 7
37 37 H 1.09005 * 109.46546 * 59.99730 * 10 8 7
38 38 H 1.08996 * 109.47487 * 179.97438 * 10 8 7
39 39 H 1.08994 * 109.47203 * 300.00280 * 10 8 7
40 40 H 1.08996 * 109.47106 * 60.00266 * 11 8 7
41 41 H 1.09005 * 109.46819 * 179.97438 * 11 8 7
42 42 H 1.09000 * 109.46867 * 299.99641 * 11 8 7
43 43 H 1.08997 * 112.94657 * 53.58608 * 12 2 1
44 44 H 1.09002 * 113.77040 * 336.35043 * 13 12 2
45 45 H 1.09000 * 113.76697 * 107.75293 * 13 12 2
46 46 H 1.08999 * 109.47461 * 300.00274 * 17 15 14
47 47 H 1.09004 * 109.47390 * 59.99480 * 17 15 14
48 48 H 0.96994 * 119.99919 * 180.02562 * 22 21 19
49 49 H 1.08998 * 113.76919 * 221.15031 * 27 14 13
50 50 H 1.09000 * 113.87099 * 89.76448 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6908 -1.1960
5 6 2.1472 -0.0186 -2.3570
6 8 1.8591 1.1584 -2.4115
7 6 2.6501 -0.7290 -3.5872
8 6 2.7021 0.2542 -4.7584
9 6 3.6460 1.4080 -4.4142
10 6 3.2134 -0.4669 -6.0073
11 6 1.2997 0.8046 -5.0248
12 6 2.0398 -0.7212 1.2494
13 6 1.9702 0.1317 2.5291
14 7 3.3065 -0.4161 2.8440
15 6 4.0037 -0.6089 3.9812
16 8 5.1136 -1.0958 3.9370
17 6 3.4041 -0.2194 5.3078
18 16 4.5750 -0.6006 6.6344
19 6 3.6435 -0.0608 8.0292
20 1 2.6565 0.3555 7.8911
21 6 4.1785 -0.1697 9.3053
22 7 5.3816 -0.6767 9.4736
23 14 3.1911 0.4031 10.7840
24 1 2.3733 -0.7240 11.2999
25 1 4.1172 0.8698 11.8469
26 1 2.2980 1.5188 10.3807
27 6 3.5696 -0.6693 1.4141
28 1 -0.3634 -1.0248 -0.0751
29 1 -0.3634 0.4476 0.9251
30 1 -0.3633 0.5775 -0.8501
31 1 2.2491 -1.6320 -1.1523
32 1 3.6494 -1.1207 -3.3975
33 1 1.9780 -1.5513 -3.8323
34 1 4.6452 1.0159 -4.2243
35 1 3.6827 2.1087 -5.2484
36 1 3.2822 1.9219 -3.5243
37 1 2.5413 -1.2892 -6.2526
38 1 3.2500 0.2333 -6.8417
39 1 4.2125 -0.8587 -5.8171
40 1 0.9360 1.3185 -4.1351
41 1 1.3369 1.5054 -5.8590
42 1 0.6273 -0.0175 -5.2702
43 1 1.6197 -1.7203 1.3645
44 1 1.9686 1.2056 2.3419
45 1 1.1910 -0.1815 3.2239
46 1 3.1880 0.8489 5.3093
47 1 2.4811 -0.7769 5.4671
48 1 5.7552 -0.7531 10.3653
49 1 4.0648 -1.6207 1.2202
50 1 4.0390 0.1676 0.8970
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001509382037.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:39:28
Heat of formation + Delta-G solvation = -80.091972 kcal
Electronic energy + Delta-G solvation = -27297.378404 eV
Core-core repulsion = 23450.551394 eV
Total energy + Delta-G solvation = -3846.827009 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.176 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.64638 -40.87276 -39.13084 -37.55026 -35.89537 -34.60266 -32.65526 -31.51682
-29.07843 -28.75879 -28.06028 -27.98846 -27.66286 -27.04938 -24.48601 -21.84147
-21.48068 -20.40847 -19.74493 -19.53276 -18.14269 -17.81750 -17.48675 -16.92232
-16.85325 -16.50794 -16.23507 -15.76206 -15.56345 -15.35239 -15.16476 -15.06957
-14.77893 -14.48839 -14.03865 -13.72965 -13.69547 -13.57798 -13.49727 -13.17537
-13.00836 -12.95746 -12.89692 -12.88587 -12.68654 -12.61864 -12.56305 -12.19359
-11.95688 -11.89149 -11.78213 -11.72193 -11.56723 -11.48771 -11.15607 -10.92426
-10.34690 -10.31181 -9.94860 -9.77061 -8.70265 -8.36138 -6.15359 1.20056
1.41922 1.42254 1.53075 1.56201 1.78823 1.95907 2.24367 2.25970
2.98027 3.17574 3.32274 3.61221 3.69600 3.79242 3.93431 3.99136
4.04550 4.15250 4.23386 4.33628 4.42500 4.45256 4.49281 4.52368
4.58563 4.63193 4.64242 4.71616 4.73363 4.86795 4.88931 4.89922
4.90333 5.02289 5.05709 5.12930 5.20827 5.21714 5.29203 5.40015
5.40305 5.42247 5.55509 5.57178 5.77126 6.18230 6.54833 6.69252
7.04846 7.08293 7.43603 8.73238
Molecular weight = 342.18amu
Principal moments of inertia in cm(-1)
A = 0.029430 B = 0.001725 C = 0.001672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 951.175231 B =16231.411846 C =16737.498800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.160 3.840
3 H 0.076 0.924
4 N -0.719 5.719
5 C 0.511 3.489
6 O -0.565 6.565
7 C -0.130 4.130
8 C -0.053 4.053
9 C -0.152 4.152
10 C -0.139 4.139
11 C -0.149 4.149
12 C -0.104 4.104
13 C 0.108 3.892
14 N -0.650 5.650
15 C 0.552 3.448
16 O -0.571 6.571
17 C -0.119 4.119
18 S -0.153 6.153
19 C -0.547 4.547
20 H 0.083 0.917
21 C 0.014 3.986
22 N -0.911 5.911
23 Si 1.000 3.000
24 H -0.266 1.266
25 H -0.278 1.278
26 H -0.258 1.258
27 C 0.110 3.890
28 H 0.070 0.930
29 H 0.077 0.923
30 H 0.045 0.955
31 H 0.414 0.586
32 H 0.109 0.891
33 H 0.114 0.886
34 H 0.050 0.950
35 H 0.046 0.954
36 H 0.061 0.939
37 H 0.065 0.935
38 H 0.053 0.947
39 H 0.061 0.939
40 H 0.061 0.939
41 H 0.046 0.954
42 H 0.055 0.945
43 H 0.128 0.872
44 H 0.102 0.898
45 H 0.104 0.896
46 H 0.103 0.897
47 H 0.108 0.892
48 H 0.272 0.728
49 H 0.081 0.919
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.520 -0.945 -30.752 33.606
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.054 3.946
3 H 0.094 0.906
4 N -0.371 5.371
5 C 0.299 3.701
6 O -0.444 6.444
7 C -0.170 4.170
8 C -0.053 4.053
9 C -0.209 4.209
10 C -0.196 4.196
11 C -0.207 4.207
12 C -0.123 4.123
13 C -0.014 4.014
14 N -0.387 5.387
15 C 0.341 3.659
16 O -0.450 6.450
17 C -0.270 4.270
18 S 0.075 5.925
19 C -0.695 4.695
20 H 0.101 0.899
21 C -0.191 4.191
22 N -0.547 5.547
23 Si 0.821 3.179
24 H -0.191 1.191
25 H -0.203 1.203
26 H -0.182 1.182
27 C -0.012 4.012
28 H 0.089 0.911
29 H 0.096 0.904
30 H 0.065 0.935
31 H 0.250 0.750
32 H 0.127 0.873
33 H 0.132 0.868
34 H 0.069 0.931
35 H 0.066 0.934
36 H 0.079 0.921
37 H 0.084 0.916
38 H 0.072 0.928
39 H 0.080 0.920
40 H 0.080 0.920
41 H 0.065 0.935
42 H 0.074 0.926
43 H 0.146 0.854
44 H 0.120 0.880
45 H 0.122 0.878
46 H 0.121 0.879
47 H 0.126 0.874
48 H 0.081 0.919
49 H 0.100 0.900
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -11.843 -0.903 -30.563 32.789
hybrid contribution -1.052 0.573 1.160 1.668
sum -12.895 -0.330 -29.403 32.108
Atomic orbital electron populations
1.22103 0.93897 1.02929 1.02600 1.20769 0.94794 0.96376 0.82651
0.90592 1.46040 1.67249 1.14762 1.09031 1.21107 0.76616 0.87072
0.85260 1.90601 1.51108 1.17638 1.85061 1.21834 1.04357 0.99371
0.91439 1.20283 0.95889 0.94745 0.94415 1.22069 0.98498 0.98304
1.02048 1.21864 1.01402 1.00253 0.96119 1.22044 0.95891 1.00822
1.01901 1.23325 0.93954 1.01630 0.93412 1.23576 0.83232 0.99727
0.94894 1.50094 1.20186 1.62981 1.05419 1.19785 0.84028 0.77312
0.84762 1.90686 1.21239 1.46003 1.87079 1.23275 1.03728 1.05402
0.94629 1.85591 1.25315 1.83215 0.98422 1.23193 1.05063 1.48274
0.92929 0.89887 1.26147 0.96326 0.94619 1.02022 1.70186 1.17014
1.43421 1.24129 0.84934 0.77780 0.78894 0.76248 1.19138 1.20275
1.18201 1.23326 0.97376 1.02169 0.78364 0.91076 0.90412 0.93537
0.74980 0.87320 0.86785 0.93061 0.93439 0.92061 0.91604 0.92761
0.91995 0.91996 0.93502 0.92594 0.85440 0.88021 0.87795 0.87875
0.87387 0.91943 0.90049 0.89753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.52 9.46 71.98 0.68 -0.84 16
2 C 0.16 1.71 2.29 44.99 0.10 1.82 16
3 H 0.08 1.15 7.49 -2.39 -0.02 1.13 16
4 N -0.72 -6.48 4.95 -442.53 -2.19 -8.67 16
5 C 0.51 6.77 7.21 87.66 0.63 7.40 16
6 O -0.56 -11.77 11.01 -3.06 -0.03 -11.80 16
7 C -0.13 -1.08 4.77 29.85 0.14 -0.94 16
8 C -0.05 -0.61 0.77 -52.18 -0.04 -0.65 16
9 C -0.15 -2.34 8.17 71.98 0.59 -1.75 16
10 C -0.14 -1.16 8.47 71.98 0.61 -0.55 16
11 C -0.15 -2.08 8.18 71.98 0.59 -1.49 16
12 C -0.10 -1.17 3.35 -10.13 -0.03 -1.20 16
13 C 0.11 1.67 8.01 86.44 0.69 2.36 16
14 N -0.65 -17.09 3.61 -835.84 -3.02 -20.11 16
15 C 0.55 21.46 8.07 87.66 0.71 22.17 16
16 O -0.57 -27.82 16.59 -3.06 -0.05 -27.87 16
17 C -0.12 -4.89 5.91 71.24 0.42 -4.47 16
18 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16
19 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16
20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16
21 C 0.01 0.78 5.49 84.86 0.47 1.25 16
22 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16
23 Si 1.00 43.57 29.55 68.60 2.03 45.59 16
24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16
27 C 0.11 2.05 8.28 86.49 0.72 2.77 16
28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
29 H 0.08 0.63 7.99 -2.39 -0.02 0.61 16
30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16
31 H 0.41 1.63 8.60 -92.71 -0.80 0.84 16
32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16
33 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16
34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.06 1.26 5.51 -2.38 -0.01 1.24 16
37 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16
38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
39 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
40 H 0.06 1.17 5.51 -2.39 -0.01 1.16 16
41 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16
42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
43 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16
44 H 0.10 1.37 8.04 -2.39 -0.02 1.35 16
45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
46 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16
47 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16
48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16
49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
50 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16
Total: -1.00 -82.86 416.37 2.89 -79.97
By element:
Atomic # 1 Polarization: 13.44 SS G_CDS: 0.12 Total: 13.56 kcal
Atomic # 6 Polarization: -11.86 SS G_CDS: 6.92 Total: -4.94 kcal
Atomic # 7 Polarization: -79.79 SS G_CDS: -4.92 Total: -84.72 kcal
Atomic # 8 Polarization: -39.59 SS G_CDS: -0.08 Total: -39.67 kcal
Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal
Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal
Total: -82.86 2.89 -79.97 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001509382037.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.122 kcal
(2) G-P(sol) polarization free energy of solvation -82.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.092 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds